ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192544.1| Oryza sativa (japonica cultivar-group), predic... 198 1e-47
2dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
4dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5gb|AY104603.1| Zea mays PCO113315 mRNA sequence 143 6e-31
6ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP ... 98 3e-17
7gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosph... 98 3e-17
8gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosph... 98 3e-17
9gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 98 3e-17
10gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 98 3e-17
11gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710... 98 3e-17
12gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete s... 98 3e-17
13dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 94 5e-16
14ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP ... 92 2e-15
15gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) ... 92 2e-15
16gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, comple... 92 2e-15
17gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 m... 92 2e-15
18gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induc... 90 8e-15
19gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 80 8e-12
20gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence 66 1e-07
21gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 66 1e-07
22gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 58 3e-05
23gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome... 44 0.43
24gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complet... 44 0.43
25emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chrom... 44 0.43
26emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 i... 44 0.43
27emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O... 42 1.7
28dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
30emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial se... 42 1.7
31ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 6.8
32gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete s... 40 6.8
33gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete se... 40 6.8
34gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 40 6.8
35ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 40 6.8
36ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 6.8
37ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 6.8
38gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.8
39gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome 40 6.8
40gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Can... 40 6.8
41ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 6.8
42emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on ... 40 6.8
43emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on ch... 40 6.8
44emb|AL359925.9| Human DNA sequence from clone RP11-199B17 on chr... 40 6.8
45gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Can... 40 6.8
46gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, compl... 40 6.8
47gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 6.8
48gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome... 40 6.8
49gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, compl... 40 6.8
50dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
52gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
53dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
54dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
55dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
56dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 6.8
57emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 40 6.8
58emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in... 40 6.8
59gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-... 40 6.8
60gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short ... 40 6.8
61emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 40 6.8
62gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, comple... 40 6.8 
>ref|NM_192544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Minus

                                                                        
Query: 333  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 392
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1040 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 981

                                                                        
Query: 393  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 980  ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 921

                                                            
Query: 453  tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggcc 500
            ||||| ||||||| || |||||||   |||||||||||||||||||||
Sbjct: 920  tgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggcc 873
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>dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full
            insert sequence
          Length = 1556

 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Minus

                                                                        
Query: 333  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 392
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1156 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 1097

                                                                        
Query: 393  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1096 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 1037

                                                            
Query: 453  tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggcc 500
            ||||| ||||||| || |||||||   |||||||||||||||||||||
Sbjct: 1036 tgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggcc 989



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 256  cgattgtgccatcatcaaagcgggccttttgtacagccat 295
            ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 1233 cgattgtgccatcatcaaacctggcattttgtacaaccat 1194
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                            
Query: 333      acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 392
                |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 22852025 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 22852084

                                                                            
Query: 393      ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
                ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 22852085 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 22852144



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 449      ctgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggcc 500
                ||||||||| ||||||| || |||||||   |||||||||||||||||||||
Sbjct: 22852686 ctgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggcc 22852737



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 256      cgattgtgccatcatcaaagcgggccttttgtacagccat 295
                ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 22851948 cgattgtgccatcatcaaacctggcattttgtacaaccat 22851987



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 53       tacattttacattgccaaca 72
                ||||||||||||||||||||
Sbjct: 39907836 tacattttacattgccaaca 39907817
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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                         
Query: 333   acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 392
             |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 55582 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 55641

                                                                         
Query: 393   ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
             ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 55642 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 55701



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 449   ctgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaggcc 500
             ||||||||| ||||||| || |||||||   |||||||||||||||||||||
Sbjct: 56243 ctgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggcc 56294



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 256   cgattgtgccatcatcaaagcgggccttttgtacagccat 295
             ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 55505 cgattgtgccatcatcaaacctggcattttgtacaaccat 55544
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>gb|AY104603.1| Zea mays PCO113315 mRNA sequence
          Length = 1601

 Score =  143 bits (72), Expect = 6e-31
 Identities = 141/164 (85%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||||||||||| |  |||||||||||| || || ||||| ||||||||||||
Sbjct: 1259 acgacactgtcatggacccgggacttctggttctgagcgacacattcagagatccacatc 1200

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 1199 aggttcctgatctcctgctcgcggagcctgatgtaagcgaagaaaacagcgtagtggaac 1140

                                                        
Query: 450  tgctgttcgaatgacaggcgcagcctctttacttcctcctcata 493
            ||||| || || |||| ||  |||||||| ||||||||||||||
Sbjct: 1139 tgctgctcaaaggacaagcatagcctcttgacttcctcctcata 1096



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 256  cgattgtgccatcatcaaagcgggccttttgtaca 290
            ||||||||||||||||||||| ||| |||||||||
Sbjct: 1330 cgattgtgccatcatcaaagcaggcattttgtaca 1296
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>ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28710 mRNA, complete cds
          Length = 1429

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057

                 
Query: 450  tgctg 454
            |||||
Sbjct: 1056 tgctg 1052
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>gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1087

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924

                 
Query: 450  tgctg 454
            |||||
Sbjct: 923  tgctg 919
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>gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1421

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040

                 
Query: 450  tgctg 454
            |||||
Sbjct: 1039 tgctg 1035
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>gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1056

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924

                 
Query: 450  tgctg 454
            |||||
Sbjct: 923  tgctg 919
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>gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1429

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057

                 
Query: 450  tgctg 454
            |||||
Sbjct: 1056 tgctg 1052
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>gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710/MZN14_20) mRNA, complete
            cds
          Length = 1400

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040

                 
Query: 450  tgctg 454
            |||||
Sbjct: 1039 tgctg 1035
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>gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete sequence
          Length = 1363

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 330  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1122 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1063

                                                                        
Query: 390  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1062 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1003

                 
Query: 450  tgctg 454
            |||||
Sbjct: 1002 tgctg 998
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>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14
          Length = 82890

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                         
Query: 330   acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 389
             ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 75724 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 75783

                                                                         
Query: 390   aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 449
             | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 75784 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 75843

                
Query: 450   tgc 452
             |||
Sbjct: 75844 tgc 75846



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                         
Query: 353   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 412
             |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 82881 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 82822

                                                     
Query: 413   tagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
              | |||||| ||||||||||| || || || |||||||||
Sbjct: 82821 caacctcatatacgcaaagaataccgcgtaatggaactgc 82782
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>ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28715 mRNA, complete cds
          Length = 1056

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 353  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 412
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                                      
Query: 413  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 454
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 960  caacctcatatacgcaaagaataccgcgtaatggaactgctg 919
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>gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) mRNA, complete cds
          Length = 1207

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 353  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 412
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                                      
Query: 413  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 454
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 960  caacctcatatacgcaaagaataccgcgtaatggaactgctg 919
to top
>gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1422

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 353  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 412
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1105 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1046

                                                      
Query: 413  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 454
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 1045 caacctcatatacgcaaagaataccgcgtaatggaactgctg 1004
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>gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 mRNA, complete cds
          Length = 1382

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 353  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 412
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1143 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1084

                                                      
Query: 413  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 454
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 1083 caacctcatatacgcaaagaataccgcgtaatggaactgctg 1042
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>gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induced mRNA
          Length = 453

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                       
Query: 336 ctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaagttc 395
           |||||||| || |||  |||||| ||||| || |||||||| || |||||||| | ||||
Sbjct: 274 ctgtcatgaactctggacttctgattctgagccacgcattctgaaatccacattaggttc 215

                                                                       
Query: 396 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgctgt 455
           || ||||||||||| | ||||||||| || || ||||| |||||||| |||||||| || 
Sbjct: 214 ctgatctcctgctcccttagcctcatatatgcgaagaacacagcataatggaactgttgc 155

                                                    
Query: 456 tcgaatgacaggcgcagcctctttacttcctcctcatagaa 496
           || || | || ||  |||||||| || ||||||||||||||
Sbjct: 154 tcaaacgccaagcaaagcctcttcacctcctcctcatagaa 114
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>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH097M21, complete sequence
          Length = 131063

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                         
Query: 353   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 412
             |||||| ||||| ||||| ||||| || |||||||||| |||||| ||||||||||| | 
Sbjct: 96226 cttctgattctgcgcaacacattccgatatccacatcaggttcctgatctcctgctccct 96285

                                                     
Query: 413   tagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
              | ||||||||| |||||||| || || ||||||||||||
Sbjct: 96286 caacctcatgtaagcaaagaacaccgcgtagtggaactgc 96325
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>gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence
          Length = 1534

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 102/125 (81%)
 Strand = Plus / Minus

                                                                        
Query: 333  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 392
            |||||||||||||| ||| | || |||||||| |  || ||||| || |||||||| | |
Sbjct: 1140 acgctgtcatggactctggttttttggttctgagagacacattcagaaatccacattagg 1081

                                                                        
Query: 393  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
            |||||||||||||||||||  ||||| || || |  || || ||| ||||||||||||| 
Sbjct: 1080 ttccttatctcctgctctctcagccttatatatgagaaaaatacaccatagtggaactgt 1021

                 
Query: 453  tgttc 457
            |||||
Sbjct: 1020 tgttc 1016
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>gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1p4, complete sequence
          Length = 124443

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 396   cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
             |||||||||||||| | || |||||| || |||||||||||||||||||| ||||||
Sbjct: 90132 cttatctcctgctcccttaacctcatatatgcaaagaaaacagcatagtgaaactgc 90076



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 396    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
              |||||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 115767 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 115711



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 399   atctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
             ||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 50598 atctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 50545



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 472    gcctctttacttcctcctcatagaa 496
              ||||||| |||||||||||||||||
Sbjct: 115554 gcctcttgacttcctcctcatagaa 115530



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 472   gcctctttacttcctcctcatagaa 496
             ||||||| |||||||||||||||||
Sbjct: 89919 gcctcttgacttcctcctcatagaa 89895
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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 396    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 452
              |||||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 129526 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 129582



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 472    gcctctttacttcctcctcatagaa 496
              ||||||| |||||||||||||||||
Sbjct: 129739 gcctcttgacttcctcctcatagaa 129763
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>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 142   ttttattttgctacaaaaacaaataa 167
             ||||||||| ||||||||||||||||
Sbjct: 15585 ttttattttactacaaaaacaaataa 15610
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>gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complete sequence
          Length = 133624

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 142    ttttattttgctacaaaaacaaataa 167
              ||||||||| ||||||||||||||||
Sbjct: 120438 ttttattttactacaaaaacaaataa 120463
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>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete
              sequence
          Length = 173310

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 142    ttttattttgctacaaaaacaaataa 167
              ||||||||| ||||||||||||||||
Sbjct: 166832 ttttattttactacaaaaacaaataa 166807
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>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13,
             complete sequence
          Length = 219918

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 58    tttacattgccaacaaactgcacaaa 83
             ||||||||||||||||||| ||||||
Sbjct: 41802 tttacattgccaacaaactacacaaa 41827
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>emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O22 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 74974

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aaacatcatttatttagttta 126
             |||||||||||||||||||||
Sbjct: 36992 aaacatcatttatttagttta 36972
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 104      ataaacatcatttatttagtt 124
                |||||||||||||||||||||
Sbjct: 25932452 ataaacatcatttatttagtt 25932432
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 104      ataaacatcatttatttagtt 124
                |||||||||||||||||||||
Sbjct: 25860628 ataaacatcatttatttagtt 25860608
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>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 61296

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   ataaacatcatttatttagtt 124
             |||||||||||||||||||||
Sbjct: 42837 ataaacatcatttatttagtt 42857
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>ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha 3 (LOC471651), mRNA
          Length = 6684

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   actgcacaaatagtgccacccact 97
            ||||||| ||||||||||||||||
Sbjct: 1439 actgcaccaatagtgccacccact 1416
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>gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete sequence
          Length = 6281

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  ttgctacaaaaacaaataat 168
            ||||||||||||||||||||
Sbjct: 5207 ttgctacaaaaacaaataat 5226
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>gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete sequence
          Length = 5887

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  ttgctacaaaaacaaataat 168
            ||||||||||||||||||||
Sbjct: 2322 ttgctacaaaaacaaataat 2341
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>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 74     actgcacaaatagtgccacccact 97
              ||||||| ||||||||||||||||
Sbjct: 104078 actgcaccaatagtgccacccact 104101
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>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    actgcacaaatagtgccacccact 97
             ||||||| ||||||||||||||||
Sbjct: 53893 actgcaccaatagtgccacccact 53870
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>ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 2,
            mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   actgcacaaatagtgccacccact 97
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 1,
            mRNA
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   actgcacaaatagtgccacccact 97
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 145      tattttgctacaaaaacaaataat 168
                |||||||||| |||||||||||||
Sbjct: 20896600 tattttgctaaaaaaacaaataat 20896577
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>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    attttgctacaaaaacaaat 165
              ||||||||||||||||||||
Sbjct: 333714 attttgctacaaaaacaaat 333695
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>gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186739

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   catagaaaataggaacaagg 220
             ||||||||||||||||||||
Sbjct: 41380 catagaaaataggaacaagg 41399
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>ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (90.t00024) partial mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 204 agaaaataggaacaaggggaataacaaa 231
           ||||||||||||||| || |||||||||
Sbjct: 269 agaaaataggaacaatggtaataacaaa 296
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>emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on chromosome Xq24-25 Contains
             part of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, complete sequence
          Length = 126474

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   ggaaataaacatcatttatttagt 123
             |||||||||||||| |||||||||
Sbjct: 29309 ggaaataaacatcaattatttagt 29286
to top
>emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on chromosome 13 Contains a
             novel gene and a TAR DNA binding protein (TARDBP)
             pseudogene, the 5' UTR of a novel gene (FLJ21007) and 2
             CpG islands, complete sequence
          Length = 226860

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   aacagcatagtggaactgct 453
             ||||||||||||||||||||
Sbjct: 30727 aacagcatagtggaactgct 30746
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>emb|AL359925.9| Human DNA sequence from clone RP11-199B17 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 150088

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    taaaagagttttgccaacaa 32
             ||||||||||||||||||||
Sbjct: 98000 taaaagagttttgccaacaa 98019
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>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192550

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    aacatcatttatttagttta 126
              ||||||||||||||||||||
Sbjct: 119176 aacatcatttatttagttta 119195
to top
>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ctacaaaaacaaataatgat 171
             ||||||||||||||||||||
Sbjct: 47263 ctacaaaaacaaataatgat 47244
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     agcttttcagccgcatagaa 207
               ||||||||||||||||||||
Sbjct: 1463892 agcttttcagccgcatagaa 1463873
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>gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome 8, complete sequence
          Length = 220673

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     ttacattgccaacaaactgcacaa 82
              |||||||||||||||| |||||||
Sbjct: 206650 ttacattgccaacaaaatgcacaa 206627
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>gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, complete sequence
          Length = 135503

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   ataaacatcatttatttagt 123
             ||||||||||||||||||||
Sbjct: 68625 ataaacatcatttatttagt 68606
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 138      cgccttttattttgctacaa 157
                ||||||||||||||||||||
Sbjct: 13032605 cgccttttattttgctacaa 13032586
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 145      tattttgctacaaaaacaaataat 168
                |||||||||| |||||||||||||
Sbjct: 20889629 tattttgctaaaaaaacaaataat 20889606
to top
>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 145   tattttgctacaaaaacaaataat 168
             |||||||||| |||||||||||||
Sbjct: 25912 tattttgctaaaaaaacaaataat 25935
to top
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004D12
          Length = 138136

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tacattttacattgccaaca 72
             ||||||||||||||||||||
Sbjct: 88544 tacattttacattgccaaca 88525
to top
>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   cgccttttattttgctacaa 157
             ||||||||||||||||||||
Sbjct: 71406 cgccttttattttgctacaa 71387
to top
>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0577H07
          Length = 126757

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    cgccttttattttgctacaa 157
              ||||||||||||||||||||
Sbjct: 114982 cgccttttattttgctacaa 114963
to top
>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2
          Length = 70952

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   tttgtacagccatatgcaca 302
             ||||||||||||||||||||
Sbjct: 66000 tttgtacagccatatgcaca 66019
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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   ttattttgctacaaaaacaaataa 167
             ||||||||| ||||||||||||||
Sbjct: 81817 ttattttgcaacaaaaacaaataa 81794
to top
>emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in linkage group 18,
             complete sequence
          Length = 139084

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 144   ttattttgctacaaaaacaaataa 167
             ||||||||| ||||||||||||||
Sbjct: 17281 ttattttgcaacaaaaacaaataa 17258
to top
>gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-alpha1) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   actgcacaaatagtgccacccact 97
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
to top
>gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short form protein (PCDH-alpha1)
            variable region sequence, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   actgcacaaatagtgccacccact 97
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
to top
>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
             sequence
          Length = 229346

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   catggaccctgttcttctgg 359
             ||||||||||||||||||||
Sbjct: 91184 catggaccctgttcttctgg 91203
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>gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, complete sequence
          Length = 169338

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     ttacattgccaacaaactgcacaa 82
              |||||||||||||||| |||||||
Sbjct: 143016 ttacattgccaacaaaatgcacaa 143039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,651,580
Number of Sequences: 3902068
Number of extensions: 5651580
Number of successful extensions: 101090
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100761
Number of HSP's gapped (non-prelim): 327
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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