ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 92 2e-15
2gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genom... 92 2e-15
3gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genom... 92 2e-15
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AK103622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
6ref|XM_468714.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
7gb|BT018155.1| Zea mays clone EL01N0556A12.c mRNA sequence 76 9e-11
8gb|AY104791.1| Zea mays PCO102820 mRNA sequence 68 2e-08
9gb|AY859551.1| Anoplodactylus portus 18S ribosomal RNA gene, par... 46 0.081
10emb|AL831710.8| Mouse DNA sequence from clone RP23-29K19 on chro... 42 1.3
11gb|AC164293.2| Mus musculus BAC clone RP24-208N14 from chromosom... 40 5.0
12gb|AC138638.11| Mus musculus chromosome 8, clone RP23-380M21, co... 40 5.0
13gb|AC141438.4| Mus musculus BAC clone RP23-212C9 from 9, complet... 40 5.0
14emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chrom... 40 5.0
15gb|AC102210.6| Mus musculus chromosome 8, clone RP24-351F4, comp... 40 5.0 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                            
Query: 302      actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
                ||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 17189092 actaaaaggtcctggagtatttcttgatctcatataagatagaggatatggaaaccaggt 17189151

                          
Query: 362      ccttgttgag 371
                ||||||||||
Sbjct: 17189152 ccttgttgag 17189161
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>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete
             sequence
          Length = 115326

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                         
Query: 302   actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
             ||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 21836 actaaaaggtcctggagtatttcttgatctcatataagatagaggatatggaaaccaggt 21895

                       
Query: 362   ccttgttgag 371
             ||||||||||
Sbjct: 21896 ccttgttgag 21905
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>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
             sequence
          Length = 153247

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                         
Query: 302   actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
             ||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 80485 actaaaaggtcctggagtatttcttgatctcatataagatagaggatatggaaaccaggt 80544

                       
Query: 362   ccttgttgag 371
             ||||||||||
Sbjct: 80545 ccttgttgag 80554
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                            
Query: 302      actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
                ||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 17182661 actaaaaggtcctggagtatttcttgatctcatataagatagaggatatggaaaccaggt 17182720

                          
Query: 362      ccttgttgag 371
                ||||||||||
Sbjct: 17182721 ccttgttgag 17182730
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>dbj|AK103622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133M18, full
            insert sequence
          Length = 2602

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 302  actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
            ||||||| ||||| |||||||||||||||||||| | ||| ||||||||||| |||||||
Sbjct: 2249 actaaaaggtcctggagtatttcttgatctcatataagatagaggatatggaaaccaggt 2190

                      
Query: 362  ccttgttgag 371
            ||||||||||
Sbjct: 2189 ccttgttgag 2180
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>ref|XM_468714.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2109

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                        
Query: 303  ctaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggtc 362
            |||||| ||||| |||||||||||||||||||| | ||| ||||||||||| ||||||||
Sbjct: 2109 ctaaaaggtcctggagtatttcttgatctcatataagatagaggatatggaaaccaggtc 2050

                     
Query: 363  cttgttgag 371
            |||||||||
Sbjct: 2049 cttgttgag 2041
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>gb|BT018155.1| Zea mays clone EL01N0556A12.c mRNA sequence
          Length = 1362

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                        
Query: 302  actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
            ||||||| |||||||| || |||||||| ||  ||||||||||||||||||| || ||||
Sbjct: 1143 actaaaacgtcctagaatacttcttgatttcgaacaggatggaggatatggagacaaggt 1084

                      
Query: 362  ccttgttgag 371
            ||||||||||
Sbjct: 1083 ccttgttgag 1074
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>gb|AY104791.1| Zea mays PCO102820 mRNA sequence
          Length = 1279

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                        
Query: 302  actaaaaagtcctagagtatttcttgatctcatacaggatggaggatatggataccaggt 361
            ||||||| |||||||| || |||||||  ||  ||||||||||||||||||| || ||||
Sbjct: 1277 actaaaacgtcctagaatacttcttgacttcgaacaggatggaggatatggagacaaggt 1218

                      
Query: 362  ccttgttgag 371
            ||||||||||
Sbjct: 1217 ccttgttgag 1208
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>gb|AY859551.1| Anoplodactylus portus 18S ribosomal RNA gene, partial sequence
          Length = 1809

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 190 aaaggggtgaaacccgacgggatgttc 216
           |||||||||||| ||||||||||||||
Sbjct: 726 aaaggggtgaaaaccgacgggatgttc 700
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>emb|AL831710.8| Mouse DNA sequence from clone RP23-29K19 on chromosome 4, complete
             sequence
          Length = 191635

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 333   atacaggatggaggatatgga 353
             |||||||||||||||||||||
Sbjct: 18807 atacaggatggaggatatgga 18787
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>gb|AC164293.2| Mus musculus BAC clone RP24-208N14 from chromosome 9, complete sequence
          Length = 166713

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aacaaacacttggcagtaca 152
             ||||||||||||||||||||
Sbjct: 68568 aacaaacacttggcagtaca 68549
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>gb|AC138638.11| Mus musculus chromosome 8, clone RP23-380M21, complete sequence
          Length = 168821

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gggatgttctttcttcaagt 227
             ||||||||||||||||||||
Sbjct: 36805 gggatgttctttcttcaagt 36824
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>gb|AC141438.4| Mus musculus BAC clone RP23-212C9 from 9, complete sequence
          Length = 195679

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   aacaaacacttggcagtaca 152
             ||||||||||||||||||||
Sbjct: 76686 aacaaacacttggcagtaca 76705
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>emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chromosome X, complete
              sequence
          Length = 252977

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tggggcccataaaaatctca 57
              ||||||||||||||||||||
Sbjct: 234681 tggggcccataaaaatctca 234662
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>gb|AC102210.6| Mus musculus chromosome 8, clone RP24-351F4, complete sequence
          Length = 165443

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   gggatgttctttcttcaagt 227
             ||||||||||||||||||||
Sbjct: 42738 gggatgttctttcttcaagt 42719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,092,921
Number of Sequences: 3902068
Number of extensions: 3092921
Number of successful extensions: 51877
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51832
Number of HSP's gapped (non-prelim): 45
length of query: 374
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 352
effective length of database: 17,147,199,772
effective search space: 6035814319744
effective search space used: 6035814319744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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