ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186423.2| Oryza sativa (japonica cultivar-group), mRNA 90 8e-15
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
3dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
4dbj|AK110810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
5gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 54 5e-04
6ref|NM_184424.2| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
8dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
9dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
10dbj|AK073659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
11dbj|AK060305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
12gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 44 0.44
13gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 1.8
14emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, ... 42 1.8
15gb|AC090764.35| Homo sapiens chromosome 15, clone RP11-289D12, c... 42 1.8
16gb|AC135069.17| Homo sapiens chromosome 15, clone RP11-1081C20, ... 42 1.8
17gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomycet... 42 1.8
18emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in... 42 1.8
19emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 i... 42 1.8
20gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 6.9
21gb|AC074259.14| Trypanosoma brucei chromosome 6 clone RPCI93-4M1... 40 6.9
22gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
23gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
24gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complet... 40 6.9
25gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.9
26gb|AY249159.1| Uncultured bacterium clone T-45 ammonia monooxyge... 40 6.9
27gb|AC123830.5| Mus musculus BAC clone RP24-125B17 from chromosom... 40 6.9
28emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in ... 40 6.9
29emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 ... 40 6.9
30emb|AL137017.9| Human DNA sequence from clone RP11-120J1 on chro... 40 6.9
31gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswe... 40 6.9
32ref|NM_141055.2| Drosophila melanogaster CG6014-RA (CG6014), mRNA 40 6.9
33gb|AC099553.1| Drosophila melanogaster 3L BAC RP98-25G5 (Roswell... 40 6.9
34gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 6.9
35emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13,... 40 6.9
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
38gb|AC010534.7|AC010534 Homo sapiens chromosome 16 clone RP11-259... 40 6.9
39gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, com... 40 6.9
40dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
41dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
42dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.9
43gb|AF145671.1|AF145671 Drosophila melanogaster clone GH11973 BcD... 40 6.9
44gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75... 40 6.9
45gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 ... 40 6.9
46gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
47gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.9
48ref|XM_674619.1| Plasmodium berghei strain ANKA dynactin 4 (PB00... 40 6.9
49emb|Z96795.1|TBBRGG Trypanosoma brucei brucei mRNA for mitochond... 40 6.9 
>ref|NM_186423.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1365

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                       
Query: 363 cagccgctccgcgtagtcgacggtccggtcgtgcagcaagtcggtgccgctggaaacgac 422
           ||||||||| |||||||||||||  |||||| |||||| ||||  ||||| ||  |||||
Sbjct: 972 cagccgctcggcgtagtcgacggcgcggtcgcgcagcatgtcgaggccgccggcgacgac 913

                                                                       
Query: 423 gaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacgggttcgc 482
           ||||||||| |||| ||| ||   | ||| ||| ||||||||||  ||||||||||||||
Sbjct: 912 gaggaccggggggagctcgacgccgtccatggcggggctgtccgggccgaacgggttcgc 853

                                    
Query: 483 gatcgggtggtctctgctggcgccc 507
            ||||||||||| ||  ||||||||
Sbjct: 852 catcgggtggtccctcgtggcgccc 828
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                           
Query: 363     cagccgctccgcgtagtcgacggtccggtcgtgcagcaagtcggtgccgctggaaacgac 422
               ||||||||| |||||||||||||  |||||| |||||| ||||  ||||| ||  |||||
Sbjct: 3383853 cagccgctcggcgtagtcgacggcgcggtcgcgcagcatgtcgaggccgccggcgacgac 3383912

                                                                           
Query: 423     gaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacgggttcgc 482
               ||||||||| |||| ||| ||   | ||| ||| ||||||||||  ||||||||||||||
Sbjct: 3383913 gaggaccggggggagctcgacgccgtccatggcggggctgtccgggccgaacgggttcgc 3383972

                                        
Query: 483     gatcgggtggtctctgctggcgccc 507
                ||||||||||| ||  ||||||||
Sbjct: 3383973 catcgggtggtccctcgtggcgccc 3383997
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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 120/145 (82%)
 Strand = Plus / Plus

                                                                         
Query: 363   cagccgctccgcgtagtcgacggtccggtcgtgcagcaagtcggtgccgctggaaacgac 422
             ||||||||| |||||||||||||  |||||| |||||| ||||  ||||| ||  |||||
Sbjct: 23673 cagccgctcggcgtagtcgacggcgcggtcgcgcagcatgtcgaggccgccggcgacgac 23732

                                                                         
Query: 423   gaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacgggttcgc 482
             ||||||||| |||| ||| ||   | ||| ||| ||||||||||  ||||||||||||||
Sbjct: 23733 gaggaccggggggagctcgacgccgtccatggcggggctgtccgggccgaacgggttcgc 23792

                                      
Query: 483   gatcgggtggtctctgctggcgccc 507
              ||||||||||| ||  ||||||||
Sbjct: 23793 catcgggtggtccctcgtggcgccc 23817
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>dbj|AK110810.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F04, full
           insert sequence
          Length = 1366

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 120/145 (82%)
 Strand = Plus / Minus

                                                                       
Query: 363 cagccgctccgcgtagtcgacggtccggtcgtgcagcaagtcggtgccgctggaaacgac 422
           ||||||||| |||||||||||||  |||||| |||||| ||||  ||||| ||  |||||
Sbjct: 972 cagccgctcggcgtagtcgacggcgcggtcgcgcagcatgtcgaggccgccggcgacgac 913

                                                                       
Query: 423 gaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacgggttcgc 482
           ||||||||| |||| ||| ||   | ||| ||| ||||||||||  ||||||||||||||
Sbjct: 912 gaggaccggggggagctcgacgccgtccatggcggggctgtccgggccgaacgggttcgc 853

                                    
Query: 483 gatcgggtggtctctgctggcgccc 507
            ||||||||||| ||  ||||||||
Sbjct: 852 catcgggtggtccctcgtggcgccc 828
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>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 457   gggctgtccgccccgaacgggttcgcgatcgggtggtctctgctggcgccc 507
             ||||| |||| ||||||||||||||||| ||||||||| ||  ||||||||
Sbjct: 17691 gggctctccggcccgaacgggttcgcgaacgggtggtccctcgtggcgccc 17741
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>ref|NM_184424.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1232

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 418 acgacgaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacggg 477
           |||||||| |||||||||||| ||||||   | |||   ||||||||||  |||||||||
Sbjct: 841 acgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacggg 782

                            
Query: 478 ttcgcgatcgggtggtc 494
           ||||| | |||||||||
Sbjct: 781 ttcgccaccgggtggtc 765
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                           
Query: 418     acgacgaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacggg 477
               |||||||| |||||||||||| ||||||   | |||   ||||||||||  |||||||||
Sbjct: 2956601 acgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacggg 2956660

                                
Query: 478     ttcgcgatcgggtggtc 494
               ||||| | |||||||||
Sbjct: 2956661 ttcgccaccgggtggtc 2956677



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 469     ccgaacgggttcgcgatcgggtggtctctgctggcgccctccggca 514
               |||||||||||||| | ||||||||| ||| | |||||| ||||||
Sbjct: 2953716 ccgaacgggttcgccaccgggtggtccctggtcgcgcccaccggca 2953761
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>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0011G08
          Length = 139490

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 418   acgacgaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacggg 477
             |||||||| |||||||||||| ||||||   | |||   ||||||||||  |||||||||
Sbjct: 38118 acgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacggg 38177

                              
Query: 478   ttcgcgatcgggtggtc 494
             ||||| | |||||||||
Sbjct: 38178 ttcgccaccgggtggtc 38194



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 469   ccgaacgggttcgcgatcgggtggtctctgctggcgccctccggca 514
             |||||||||||||| | ||||||||| ||| | |||||| ||||||
Sbjct: 35233 ccgaacgggttcgccaccgggtggtccctggtcgcgcccaccggca 35278
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>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0030H07
          Length = 168253

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                          
Query: 418    acgacgaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacggg 477
              |||||||| |||||||||||| ||||||   | |||   ||||||||||  |||||||||
Sbjct: 163599 acgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacggg 163658

                               
Query: 478    ttcgcgatcgggtggtc 494
              ||||| | |||||||||
Sbjct: 163659 ttcgccaccgggtggtc 163675



 Score = 44.1 bits (22), Expect = 0.44
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 469    ccgaacgggttcgcgatcgggtggtctctgctggcgccctccggca 514
              |||||||||||||| | ||||||||| ||| | |||||| ||||||
Sbjct: 160714 ccgaacgggttcgccaccgggtggtccctggtcgcgcccaccggca 160759
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>dbj|AK073659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033053C20, full
           insert sequence
          Length = 1231

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 418 acgacgaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacggg 477
           |||||||| |||||||||||| ||||||   | |||   ||||||||||  |||||||||
Sbjct: 840 acgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacggg 781

                            
Query: 478 ttcgcgatcgggtggtc 494
           ||||| | |||||||||
Sbjct: 780 ttcgccaccgggtggtc 764
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>dbj|AK060305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A09, full
           insert sequence
          Length = 1274

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 418 acgacgaggaccggcgggaactccaccgagcccagggcagggctgtccgccccgaacggg 477
           |||||||| |||||||||||| ||||||   | |||   ||||||||||  |||||||||
Sbjct: 839 acgacgagcaccggcgggaacgccaccgccgctaggctggggctgtccggtccgaacggg 780

                            
Query: 478 ttcgcgatcgggtggtc 494
           ||||| | |||||||||
Sbjct: 779 ttcgccaccgggtggtc 763
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 257     cgagccggatcagctcgccggt 278
               ||||||||||||||||||||||
Sbjct: 1356416 cgagccggatcagctcgccggt 1356437
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 375     gtagtcgacggtccggtcgtgcagc 399
               |||||||||||| ||||||||||||
Sbjct: 2181253 gtagtcgacggtgcggtcgtgcagc 2181229
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>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence
          Length = 190733

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    atctttaaaatatattgcaat 51
             |||||||||||||||||||||
Sbjct: 58813 atctttaaaatatattgcaat 58793
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>gb|AC090764.35| Homo sapiens chromosome 15, clone RP11-289D12, complete sequence
          Length = 137300

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 445   gagcccagggcagggctgtcc 465
             |||||||||||||||||||||
Sbjct: 21128 gagcccagggcagggctgtcc 21148
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>gb|AC135069.17| Homo sapiens chromosome 15, clone RP11-1081C20, complete sequence
          Length = 222726

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 445 gagcccagggcagggctgtcc 465
           |||||||||||||||||||||
Sbjct: 296 gagcccagggcagggctgtcc 316
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>gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomyceticus FK520 biosynthetic gene
             cluster, partial sequence
          Length = 77534

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 457   gggctgtccgccccgaacggg 477
             |||||||||||||||||||||
Sbjct: 37487 gggctgtccgccccgaacggg 37467
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>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
              complete sequence
          Length = 180994

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     atctttaaaatatattgcaat 51
              |||||||||||||||||||||
Sbjct: 120109 atctttaaaatatattgcaat 120129
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>emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 in linkage group 9,
            complete sequence
          Length = 166114

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 26   taaacatctttaaaatatatt 46
            |||||||||||||||||||||
Sbjct: 7178 taaacatctttaaaatatatt 7158
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    aatccacgacctccagcggc 348
              ||||||||||||||||||||
Sbjct: 707134 aatccacgacctccagcggc 707153
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>gb|AC074259.14| Trypanosoma brucei chromosome 6 clone RPCI93-4M18, complete sequence
          Length = 160865

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   aatccacgacctccagcggc 348
             ||||||||||||||||||||
Sbjct: 65710 aatccacgacctccagcggc 65729
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>gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062M03
              map near S6115, complete sequence
          Length = 138223

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      aaacatttatatttcacacataaa 29
              |||||||||||| |||||||||||
Sbjct: 119347 aaacatttatatatcacacataaa 119370
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>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0060D22
              map near S6115, complete sequence
          Length = 139929

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 6      aaacatttatatttcacacataaa 29
              |||||||||||| |||||||||||
Sbjct: 111497 aaacatttatatatcacacataaa 111474
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>gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   cctctgcacctgtatgtacg 193
             ||||||||||||||||||||
Sbjct: 68232 cctctgcacctgtatgtacg 68251
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 407     tgccgctggaaacgacgagg 426
               ||||||||||||||||||||
Sbjct: 2459475 tgccgctggaaacgacgagg 2459456
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>gb|AY249159.1| Uncultured bacterium clone T-45 ammonia monooxygenase (amoA) gene,
           partial cds
          Length = 417

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 gcacctgtatgtacgtactg 198
           ||||||||||||||||||||
Sbjct: 204 gcacctgtatgtacgtactg 223
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>gb|AC123830.5| Mus musculus BAC clone RP24-125B17 from chromosome 7, complete sequence
          Length = 186045

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    acacataaacatctttaaaa 40
             ||||||||||||||||||||
Sbjct: 72442 acacataaacatctttaaaa 72423
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>emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in linkage group 16,
             complete sequence
          Length = 149652

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    acacataaacatctttaaaa 40
             ||||||||||||||||||||
Sbjct: 79952 acacataaacatctttaaaa 79971
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>emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 in linkage group 16,
            complete sequence
          Length = 153848

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   acacataaacatctttaaaa 40
            ||||||||||||||||||||
Sbjct: 5874 acacataaacatctttaaaa 5893
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>emb|AL137017.9| Human DNA sequence from clone RP11-120J1 on chromosome 9 Contains the
             3' end of a novel gene and a CpG island, complete sequence
          Length = 167585

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    cacacataaacatctttaaa 39
             ||||||||||||||||||||
Sbjct: 20537 cacacataaacatctttaaa 20556
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>gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswell Park Cancer
             Institute Drosophila BAC library) complete sequence
          Length = 168058

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   cgacgcagctgtcggcgacg 246
             ||||||||||||||||||||
Sbjct: 59639 cgacgcagctgtcggcgacg 59620
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>ref|NM_141055.2| Drosophila melanogaster CG6014-RA (CG6014), mRNA
          Length = 3961

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  cgacgcagctgtcggcgacg 246
            ||||||||||||||||||||
Sbjct: 1771 cgacgcagctgtcggcgacg 1752
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>gb|AC099553.1| Drosophila melanogaster 3L BAC RP98-25G5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177608

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    cgacgcagctgtcggcgacg 246
              ||||||||||||||||||||
Sbjct: 128545 cgacgcagctgtcggcgacg 128526
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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     aaatatattgcaatcgattc 57
              ||||||||||||||||||||
Sbjct: 177851 aaatatattgcaatcgattc 177832
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>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence
          Length = 178447

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     aaacatctttaaaatatatt 46
              ||||||||||||||||||||
Sbjct: 177366 aaacatctttaaaatatatt 177347
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 6        aaacatttatatttcacacataaa 29
                |||||||||||| |||||||||||
Sbjct: 12264000 aaacatttatatatcacacataaa 12264023
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 42       atattgcaatcgattctcac 61
                ||||||||||||||||||||
Sbjct: 29745597 atattgcaatcgattctcac 29745578
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>gb|AC010534.7|AC010534 Homo sapiens chromosome 16 clone RP11-259E8, complete sequence
          Length = 146385

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 10     atttatatttcacacataaacatctttaaaat 41
              ||||||||||||||||||| || ||| |||||
Sbjct: 142429 atttatatttcacacataagcaacttcaaaat 142460
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>gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, complete sequence
          Length = 175519

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 10     atttatatttcacacataaacatctttaaaat 41
              ||||||||||||||||||| || ||| |||||
Sbjct: 152029 atttatatttcacacataagcaacttcaaaat 151998
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ2056_H01
          Length = 123428

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   atattgcaatcgattctcac 61
            ||||||||||||||||||||
Sbjct: 1942 atattgcaatcgattctcac 1923
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     atattgcaatcgattctcac 61
              ||||||||||||||||||||
Sbjct: 114576 atattgcaatcgattctcac 114557
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gccgcgacggcgacgcagct 236
              ||||||||||||||||||||
Sbjct: 933846 gccgcgacggcgacgcagct 933827
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>gb|AF145671.1|AF145671 Drosophila melanogaster clone GH11973 BcDNA.GH11973 (BcDNA.GH11973)
            mRNA, complete cds
          Length = 3962

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  cgacgcagctgtcggcgacg 246
            ||||||||||||||||||||
Sbjct: 1771 cgacgcagctgtcggcgacg 1752
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>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete
              sequence
          Length = 314904

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    cgacgcagctgtcggcgacg 246
              ||||||||||||||||||||
Sbjct: 156241 cgacgcagctgtcggcgacg 156222
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>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete
              sequence
          Length = 303344

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    cctctgcacctgtatgtacg 193
              ||||||||||||||||||||
Sbjct: 236146 cctctgcacctgtatgtacg 236165
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 6        aaacatttatatttcacacataaa 29
                |||||||||||| |||||||||||
Sbjct: 12343307 aaacatttatatatcacacataaa 12343330
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     cgacgcagctgtcggcgacg 246
               ||||||||||||||||||||
Sbjct: 1512788 cgacgcagctgtcggcgacg 1512807
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>ref|XM_674619.1| Plasmodium berghei strain ANKA dynactin 4 (PB000986.01.0),
          partial mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 37 aaaatatattgcaatcgatt 56
          ||||||||||||||||||||
Sbjct: 12 aaaatatattgcaatcgatt 31
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>emb|Z96795.1|TBBRGG Trypanosoma brucei brucei mRNA for mitochondrial poly(u)-binding
            protein
          Length = 3447

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  aatccacgacctccagcggc 348
            ||||||||||||||||||||
Sbjct: 3329 aatccacgacctccagcggc 3348


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,656,076
Number of Sequences: 3902068
Number of extensions: 3656076
Number of successful extensions: 84041
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83482
Number of HSP's gapped (non-prelim): 555
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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