Clone Information

BLAST Search Result

Clone Name	rbart39a06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK103912.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	236	6e-59
2	dbj\|AK071113.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	236	6e-59
3	gb\|AC098833.2\| Oryza sativa (japonica cultivar-group) chromosome...	157	5e-35
4	gb\|AC118285.2\| Oryza sativa (japonica cultivar-group) chromosome...	157	5e-35
5	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	157	5e-35
6	gb\|AF111710.1\|AF111710 Oryza sativa subsp. indica putative dnaJ-...	157	5e-35
7	gb\|AY105051.1\| Zea mays PCO110431 mRNA sequence	101	2e-18
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
9	dbj\|AP003245.4\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
10	gb\|AY112585.1\| Zea mays CL2587_-2 mRNA sequence	64	5e-07
11	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	46	0.12
12	gb\|AC017040.7\| Homo sapiens BAC clone RP11-319B20 from 2, comple...	44	0.47
13	ref\|XM_879143.1\| PREDICTED: Bos taurus similar to SEC24-related ...	42	1.9
14	ref\|XM_586458.2\| PREDICTED: Bos taurus similar to SEC24-related ...	42	1.9
15	ref\|XM_879303.1\| PREDICTED: Bos taurus similar to SEC24-related ...	42	1.9
16	ref\|XM_879271.1\| PREDICTED: Bos taurus similar to SEC24-related ...	42	1.9
17	ref\|XM_879243.1\| PREDICTED: Bos taurus similar to SEC24-related ...	42	1.9
18	ref\|XM_879217.1\| PREDICTED: Bos taurus similar to SEC24-related ...	42	1.9
19	ref\|XM_418464.1\| PREDICTED: Gallus gallus similar to hypothetica...	42	1.9
20	gb\|AC125098.4\| Mus musculus BAC clone RP24-195M13 from chromosom...	42	1.9
21	gb\|AC124382.4\| Mus musculus BAC clone RP24-409N22 from chromosom...	42	1.9
22	gb\|AC125191.4\| Mus musculus BAC clone RP23-262C22 from 16, compl...	42	1.9
23	emb\|AL353596.13\| Human DNA sequence from clone CTA-212D2 on chro...	42	1.9
24	gb\|AC102385.23\| Mus musculus chromosome 1, clone RP24-338N17, co...	42	1.9
25	gb\|CP000102.1\| Methanosphaera stadtmanae DSM 3091, complete genome	42	1.9
26	gb\|AC163696.3\| Ornithorhynchus anatinus BAC clone OABb-153I22 fr...	42	1.9
27	ref\|XM_474012.1\| Oryza sativa (japonica cultivar-group), predic...	40	7.3
28	ref\|NM_001031271.1\| Gallus gallus ral guanine nucleotide dissoci...	40	7.3
29	gb\|AC158791.4\| Mus musculus chromosome 1, clone RP23-247C6, comp...	40	7.3
30	ref\|XM_416787.1\| PREDICTED: Gallus gallus similar to TAK1-bindin...	40	7.3
31	emb\|Z71260.1\|CEF15C11 Caenorhabditis elegans Cosmid F15C11, comp...	40	7.3
32	gb\|AC109240.30\| Mus musculus chromosome 1, clone RP23-445I23, co...	40	7.3
33	emb\|AL928921.21\| Human DNA sequence from clone RP13-392I16 on ch...	40	7.3
34	emb\|AL512380.20\| Human DNA sequence from clone RP11-204E9 on chr...	40	7.3
35	emb\|AL358793.14\| Human DNA sequence from clone RP11-19M4 on chro...	40	7.3
36	gb\|AF007261.1\| Reclinomonas americana mitochondrion, complete ge...	40	7.3
37	emb\|AL606444.3\|OSJN00019 Oryza sativa genomic DNA, chromosome 4,...	40	7.3
38	emb\|AJ720654.1\| Gallus gallus mRNA for hypothetical protein, clo...	40	7.3
39	emb\|CR860807.1\| Pongo pygmaeus mRNA; cDNA DKFZp459H146 (from clo...	40	7.3
40	gb\|AC100850.2\| Homo sapiens chromosome 8, clone RP11-235P11, com...	40	7.3
41	gb\|AC008005.8\| Homo sapiens chromosome 8, clone RP11-44L18, comp...	40	7.3
42	emb\|CR522890.1\| Gallus gallus finished cDNA, clone ChEST394g15	40	7.3
43	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
44	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
45	gb\|AC016716.6\| Homo sapiens BAC clone RP11-312I3 from 2, complet...	40	7.3
46	dbj\|AP003512.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
47	dbj\|AP004735.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
48	emb\|BX005175.8\| Zebrafish DNA sequence from clone DKEY-14H17 in ...	40	7.3
49	emb\|AL512545.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	7.3
50	emb\|AL732333.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	7.3
51	gb\|U51559.1\|U51559 Homo sapiens cosmid clone N65D1 from 22q12, c...	40	7.3
52	gb\|AF100165.1\|AF100165 Xenopus laevis polo-like kinase kinase 1 ...	40	7.3
53	gb\|AE016823.1\| Leptospira interrogans serovar Copenhageni str. F...	40	7.3
54	emb\|BX572639.11\| Zebrafish DNA sequence from clone CH211-209J5 i...	40	7.3
55	gb\|AC148456.2\| Xenopus tropicalis clone CH216-168B18, complete s...	40	7.3

>dbj|AK103912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C07, full
            insert sequence
          Length = 1390

 Score =  236 bits (119), Expect = 6e-59
 Identities = 242/283 (85%)
 Strand = Plus / Minus

                                                                        
Query: 258  gtaggctgttctcgcgatggtagagagattttgcgccttggaatatcgttccaagttttt 317
            |||||||||| || |||||||| ||||| || || || ||||||||||| ||||| ||||
Sbjct: 1074 gtaggctgttttcacgatggtacagagacttcgcaccctggaatatcgtcccaagctttt 1015

                                                                        
Query: 318  tcaatgcttttcctcgcaacttcagaacatcttttgagacagtgctatctttaagaactg 377
            |||||||| || |||| ||||||||||||||||||| |||| ||   ||||| | |||||
Sbjct: 1014 tcaatgctcttgctcgtaacttcagaacatcttttgggacactggcgtctttcaaaactg 955

                                                                        
Query: 378  cttggcatactcgggaaagagttgactcgatatcaaccacattaattttccatagagaat 437
            ||||||| ||  | | ||| |||||||| ||||||||||||||||||||||||||  || 
Sbjct: 954  cttggcaaacatgtgtaagtgttgactcaatatcaaccacattaattttccataggtaac 895

                                                                        
Query: 438  taagcatggcttcctttttctcctcaaaactcttcataagctgttcttccttattggcac 497
            |||||||||| || ||||||||||| ||||||||||||| ||| || ||||||||| |||
Sbjct: 894  taagcatggcatcttttttctcctcgaaactcttcataatctggtcctccttattgtcac 835

                                                       
Query: 498  cctcctccacctttttcattccatcttgtagctgcatcagagc 540
              ||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 834  tttcctccatctttttcatcccttcttgtagctgcatcagagc 792

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>dbj|AK071113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E11, full
            insert sequence
          Length = 1434

 Score =  236 bits (119), Expect = 6e-59
 Identities = 242/283 (85%)
 Strand = Plus / Minus

                                                                        
Query: 258  gtaggctgttctcgcgatggtagagagattttgcgccttggaatatcgttccaagttttt 317
            |||||||||| || |||||||| ||||| || || || ||||||||||| ||||| ||||
Sbjct: 1118 gtaggctgttttcacgatggtacagagacttcgcaccctggaatatcgtcccaagctttt 1059

                                                                        
Query: 318  tcaatgcttttcctcgcaacttcagaacatcttttgagacagtgctatctttaagaactg 377
            |||||||| || |||| ||||||||||||||||||| |||| ||   ||||| | |||||
Sbjct: 1058 tcaatgctcttgctcgtaacttcagaacatcttttgggacactggcgtctttcaaaactg 999

                                                                        
Query: 378  cttggcatactcgggaaagagttgactcgatatcaaccacattaattttccatagagaat 437
            ||||||| ||  | | ||| |||||||| ||||||||||||||||||||||||||  || 
Sbjct: 998  cttggcaaacatgtgtaagtgttgactcaatatcaaccacattaattttccataggtaac 939

                                                                        
Query: 438  taagcatggcttcctttttctcctcaaaactcttcataagctgttcttccttattggcac 497
            |||||||||| || ||||||||||| ||||||||||||| ||| || ||||||||| |||
Sbjct: 938  taagcatggcatcttttttctcctcgaaactcttcataatctggtcctccttattgtcac 879

                                                       
Query: 498  cctcctccacctttttcattccatcttgtagctgcatcagagc 540
              ||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 878  tttcctccatctttttcatcccttcttgtagctgcatcagagc 836

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>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
             complete sequence
          Length = 122120

 Score =  157 bits (79), Expect = 5e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                         
Query: 374   actgcttggcatactcgggaaagagttgactcgatatcaaccacattaattttccataga 433
             ||||||||||| ||  | | ||| |||||||| |||||||||||||||||||||||||| 
Sbjct: 67467 actgcttggcaaacatgtgtaagtgttgactcaatatcaaccacattaattttccatagg 67526

                                                                         
Query: 434   gaattaagcatggcttcctttttctcctcaaaactcttcataagctgttcttccttattg 493
              || |||||||||| || ||||||||||| ||||||||||||| ||| || |||||||||
Sbjct: 67527 taactaagcatggcatcttttttctcctcgaaactcttcataatctggtcctccttattg 67586

                                                            
Query: 494   gcaccctcctccacctttttcattccatcttgtagctgcatcagagc 540
              |||  ||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 67587 tcactttcctccatctttttcatcccttcttgtagctgcatcagagc 67633



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 296   tggaatatcgttccaagttttttcaatgcttttcctcgcaacttcagaacatcttttgag 355
             ||||||||||| ||||| |||||||||||| || |||| ||||||||||||||||||| |
Sbjct: 67264 tggaatatcgtcccaagctttttcaatgctcttgctcgtaacttcagaacatcttttggg 67323

                
Query: 356   aca 358
             |||
Sbjct: 67324 aca 67326

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>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
             complete sequence
          Length = 115026

 Score =  157 bits (79), Expect = 5e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                         
Query: 374   actgcttggcatactcgggaaagagttgactcgatatcaaccacattaattttccataga 433
             ||||||||||| ||  | | ||| |||||||| |||||||||||||||||||||||||| 
Sbjct: 23768 actgcttggcaaacatgtgtaagtgttgactcaatatcaaccacattaattttccatagg 23827

                                                                         
Query: 434   gaattaagcatggcttcctttttctcctcaaaactcttcataagctgttcttccttattg 493
              || |||||||||| || ||||||||||| ||||||||||||| ||| || |||||||||
Sbjct: 23828 taactaagcatggcatcttttttctcctcgaaactcttcataatctggtcctccttattg 23887

                                                            
Query: 494   gcaccctcctccacctttttcattccatcttgtagctgcatcagagc 540
              |||  ||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 23888 tcactttcctccatctttttcatcccttcttgtagctgcatcagagc 23934



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 296   tggaatatcgttccaagttttttcaatgcttttcctcgcaacttcagaacatcttttgag 355
             ||||||||||| ||||| |||||||||||| || |||| ||||||||||||||||||| |
Sbjct: 23565 tggaatatcgtcccaagctttttcaatgctcttgctcgtaacttcagaacatcttttggg 23624

                
Query: 356   aca 358
             |||
Sbjct: 23625 aca 23627

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  157 bits (79), Expect = 5e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                            
Query: 374      actgcttggcatactcgggaaagagttgactcgatatcaaccacattaattttccataga 433
                ||||||||||| ||  | | ||| |||||||| |||||||||||||||||||||||||| 
Sbjct: 26785528 actgcttggcaaacatgtgtaagtgttgactcaatatcaaccacattaattttccatagg 26785587

                                                                            
Query: 434      gaattaagcatggcttcctttttctcctcaaaactcttcataagctgttcttccttattg 493
                 || |||||||||| || ||||||||||| ||||||||||||| ||| || |||||||||
Sbjct: 26785588 taactaagcatggcatcttttttctcctcgaaactcttcataatctggtcctccttattg 26785647

                                                               
Query: 494      gcaccctcctccacctttttcattccatcttgtagctgcatcagagc 540
                 |||  ||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 26785648 tcactttcctccatctttttcatcccttcttgtagctgcatcagagc 26785694



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 296      tggaatatcgttccaagttttttcaatgcttttcctcgcaacttcagaacatcttttgag 355
                ||||||||||| ||||| |||||||||||| || |||| ||||||||||||||||||| |
Sbjct: 26785325 tggaatatcgtcccaagctttttcaatgctcttgctcgtaacttcagaacatcttttggg 26785384

                   
Query: 356      aca 358
                |||
Sbjct: 26785385 aca 26785387

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>gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-like protein, putative
            myb-related protein, putative farnesyl pyrophosphate
            synthase, and hypothetical protein genes, complete cds
          Length = 43422

 Score =  157 bits (79), Expect = 5e-35
 Identities = 145/167 (86%)
 Strand = Plus / Minus

                                                                        
Query: 374  actgcttggcatactcgggaaagagttgactcgatatcaaccacattaattttccataga 433
            ||||||||||| ||  | | ||| |||||||| |||||||||||||||||||||||||| 
Sbjct: 8548 actgcttggcaaacatgtgtaagtgttgactcaatatcaaccacattaattttccatagg 8489

                                                                        
Query: 434  gaattaagcatggcttcctttttctcctcaaaactcttcataagctgttcttccttattg 493
             || |||||||||| || ||||||||||| ||||||||||||| ||| || |||||||||
Sbjct: 8488 taactaagcatggcatcttttttctcctcgaaactcttcataatctggtcctccttattg 8429

                                                           
Query: 494  gcaccctcctccacctttttcattccatcttgtagctgcatcagagc 540
             |||  ||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 8428 tcactttcctccatctttttcatcccttcttgtagctgcatcagagc 8382



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 296  tggaatatcgttccaagttttttcaatgcttttcctcgcaacttcagaacatcttttgag 355
            |||||||| || ||||| |||||||||||| || |||| ||||||||||||||||||| |
Sbjct: 8751 tggaatattgtcccaagctttttcaatgctcttgctcgtaacttcagaacatcttttggg 8692

               
Query: 356  aca 358
            |||
Sbjct: 8691 aca 8689

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>gb|AY105051.1| Zea mays PCO110431 mRNA sequence
          Length = 1309

 Score =  101 bits (51), Expect = 2e-18
 Identities = 162/194 (83%), Gaps = 5/194 (2%)
 Strand = Plus / Minus

                                                                        
Query: 289  tgcgccttggaatatcgttcc--aagttttttcaatgcttttcctcgcaacttc-agaac 345
            |||||||||||||||||||||  |  ||||| ||| |||||  |||||| |||| || ||
Sbjct: 1170 tgcgccttggaatatcgttcccgagctttttccaacgctttggctcgcagcttccaggac 1111

                                                                        
Query: 346  atcttttgagacagtgctatcttta-agaactgcttggcatactcgggaaagagttgact 404
            |||||| |||||  |||||||| |  |||||||||||||| || || || || || ||||
Sbjct: 1110 atctttggagaccatgctatctctccagaactgcttggcagacacgtgagagcgtggact 1051

                                                                        
Query: 405  cgatatcaaccacattaattttcc-atagagaattaagcatggcttcctttttctcctca 463
            |||||||||||||||| ||||||| | || ||  | |||||||| || ||||||||||||
Sbjct: 1050 cgatatcaaccacattgattttcccaaagcgagctgagcatggcatcttttttctcctca 991

                          
Query: 464  aaactcttcataag 477
            ||||||||||||||
Sbjct: 990  aaactcttcataag 977

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                            
Query: 374      actgcttggcatactcgggaaagagttgactcgatatcaaccacattaattttccataga 433
                ||||||||||| || || ||||| ||||| || ||||| || ||||| |||||||| |||
Sbjct: 29115466 actgcttggcaaacacgagaaagcgttgattcaatatcgactacattgattttccacaga 29115407

                                                                        
Query: 434      gaattaagcatggcttcctttttctcctcaaaactcttcataagctgttcttcctt 489
                ||||| | ||| || || ||||||||||||| |||||||||||||||  |||||||
Sbjct: 29115406 gaattcaacattgcgtcttttttctcctcaatactcttcataagctggccttcctt 29115351

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>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                         
Query: 374   actgcttggcatactcgggaaagagttgactcgatatcaaccacattaattttccataga 433
             ||||||||||| || || ||||| ||||| || ||||| || ||||| |||||||| |||
Sbjct: 75832 actgcttggcaaacacgagaaagcgttgattcaatatcgactacattgattttccacaga 75773

                                                                     
Query: 434   gaattaagcatggcttcctttttctcctcaaaactcttcataagctgttcttcctt 489
             ||||| | ||| || || ||||||||||||| |||||||||||||||  |||||||
Sbjct: 75772 gaattcaacattgcgtcttttttctcctcaatactcttcataagctggccttcctt 75717

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>gb|AY112585.1| Zea mays CL2587_-2 mRNA sequence
          Length = 373

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 254 acgcgtaggctgttctcgcgatggtagagagattttgcgccttggaatatcgttcc 309
           ||||| |||||||| || ||| |||| | |||||||||||||||||||||||||||
Sbjct: 263 acgcgcaggctgttttcacgacggtacatagattttgcgccttggaatatcgttcc 318

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 122    tcgagagcaaacctgcggtgcca 144
              |||||||||||||||||||||||
Sbjct: 369869 tcgagagcaaacctgcggtgcca 369847

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>gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, complete sequence
          Length = 178446

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 348    cttttgagacagtgctatcttt 369
              ||||||||||||||||||||||
Sbjct: 159998 cttttgagacagtgctatcttt 160019

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>ref|XM_879143.1| PREDICTED: Bos taurus similar to SEC24-related protein C, transcript
            variant 2 (LOC509488), mRNA
          Length = 2422

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  ggaaaacatacatacaggtgc 120
            |||||||||||||||||||||
Sbjct: 1779 ggaaaacatacatacaggtgc 1799

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>ref|XM_586458.2| PREDICTED: Bos taurus similar to SEC24-related protein C, transcript
            variant 1 (LOC509488), mRNA
          Length = 4465

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  ggaaaacatacatacaggtgc 120
            |||||||||||||||||||||
Sbjct: 3822 ggaaaacatacatacaggtgc 3842

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>ref|XM_879303.1| PREDICTED: Bos taurus similar to SEC24-related protein C, transcript
            variant 8 (LOC509488), mRNA
          Length = 4381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  ggaaaacatacatacaggtgc 120
            |||||||||||||||||||||
Sbjct: 3738 ggaaaacatacatacaggtgc 3758

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>ref|XM_879271.1| PREDICTED: Bos taurus similar to SEC24-related protein C, transcript
            variant 7 (LOC509488), mRNA
          Length = 4465

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  ggaaaacatacatacaggtgc 120
            |||||||||||||||||||||
Sbjct: 3822 ggaaaacatacatacaggtgc 3842

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>ref|XM_879243.1| PREDICTED: Bos taurus similar to SEC24-related protein C, transcript
            variant 6 (LOC509488), mRNA
          Length = 4273

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  ggaaaacatacatacaggtgc 120
            |||||||||||||||||||||
Sbjct: 3630 ggaaaacatacatacaggtgc 3650

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>ref|XM_879217.1| PREDICTED: Bos taurus similar to SEC24-related protein C, transcript
            variant 5 (LOC509488), mRNA
          Length = 4522

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  ggaaaacatacatacaggtgc 120
            |||||||||||||||||||||
Sbjct: 3879 ggaaaacatacatacaggtgc 3899

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>ref|XM_418464.1| PREDICTED: Gallus gallus similar to hypothetical protein MGC5528
            (LOC420358), mRNA
          Length = 1849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 192  aattgttaaatgtcagtcttcagtg 216
            |||| ||||||||||||||||||||
Sbjct: 1505 aatttttaaatgtcagtcttcagtg 1481

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>gb|AC125098.4| Mus musculus BAC clone RP24-195M13 from chromosome 16, complete
            sequence
          Length = 182685

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 486  ccttattggcaccctcctcca 506
            |||||||||||||||||||||
Sbjct: 3558 ccttattggcaccctcctcca 3538

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>gb|AC124382.4| Mus musculus BAC clone RP24-409N22 from chromosome 1, complete sequence
          Length = 168354

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 435    aattaagcatggcttcctttttctc 459
              ||||||||| |||||||||||||||
Sbjct: 150100 aattaagcaaggcttcctttttctc 150076

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>gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, complete sequence
          Length = 196580

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 486   ccttattggcaccctcctcca 506
             |||||||||||||||||||||
Sbjct: 30292 ccttattggcaccctcctcca 30312

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>emb|AL353596.13| Human DNA sequence from clone CTA-212D2 on chromosome 6 Contains the 5'
              end of the HBS1L gene for HBS1-like (S. cerevisiae)
              (KIAA1038, EFRS) and a novel gene, complete sequence
          Length = 108329

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 446    gcttcctttttctcctcaaaa 466
              |||||||||||||||||||||
Sbjct: 103046 gcttcctttttctcctcaaaa 103066

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>gb|AC102385.23| Mus musculus chromosome 1, clone RP24-338N17, complete sequence
          Length = 119980

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 435   aattaagcatggcttcctttttctc 459
             ||||||||| |||||||||||||||
Sbjct: 28630 aattaagcaaggcttcctttttctc 28606

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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 84      tttttacagaaaacatggaaa 104
               |||||||||||||||||||||
Sbjct: 1728480 tttttacagaaaacatggaaa 1728500

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>gb|AC163696.3| Ornithorhynchus anatinus BAC clone OABb-153I22 from chromosome unknown,
             complete sequence
          Length = 139018

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 497   ccctcctccacctttttcatt 517
             |||||||||||||||||||||
Sbjct: 13863 ccctcctccacctttttcatt 13883

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>ref|XM_474012.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  gacaataattcacagagatc 178
            ||||||||||||||||||||
Sbjct: 1875 gacaataattcacagagatc 1894

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>ref|NM_001031271.1| Gallus gallus ral guanine nucleotide dissociation stimulator-like 1
            (RGL1), mRNA
          Length = 3761

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  ctccacctttttcattccat 521
            ||||||||||||||||||||
Sbjct: 3355 ctccacctttttcattccat 3374

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>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 497    ccctcctccacctttttcattcca 520
              |||||||||||||||| |||||||
Sbjct: 136127 ccctcctccaccttttccattcca 136150

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>ref|XM_416787.1| PREDICTED: Gallus gallus similar to TAK1-binding protein 3 isoform 1;
            NFkB activating protein 1 (LOC418588), mRNA
          Length = 2721

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  atggcttcctttttctcctc 462
            ||||||||||||||||||||
Sbjct: 2151 atggcttcctttttctcctc 2132

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>emb|Z71260.1|CEF15C11 Caenorhabditis elegans Cosmid F15C11, complete sequence
          Length = 24688

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   gttttttcaatgcttttcct 331
             ||||||||||||||||||||
Sbjct: 16007 gttttttcaatgcttttcct 16026

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>gb|AC109240.30| Mus musculus chromosome 1, clone RP23-445I23, complete sequence
          Length = 189545

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 497  ccctcctccacctttttcattcca 520
            |||||||||||||||| |||||||
Sbjct: 2075 ccctcctccaccttttccattcca 2052

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>emb|AL928921.21| Human DNA sequence from clone RP13-392I16 on chromosome 1, complete
             sequence
          Length = 142916

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 340   cagaacatcttttgagacagtgct 363
             |||||| |||||||||||||||||
Sbjct: 19772 cagaacttcttttgagacagtgct 19795

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>emb|AL512380.20| Human DNA sequence from clone RP11-204E9 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 150972

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    gcaccacccttttttacaga 93
             ||||||||||||||||||||
Sbjct: 76840 gcaccacccttttttacaga 76821

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>emb|AL358793.14| Human DNA sequence from clone RP11-19M4 on chromosome 1, complete
             sequence
          Length = 92434

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 309   caagttttttcaatgcttttcctc 332
             |||| |||||||||||||||||||
Sbjct: 58350 caagctttttcaatgcttttcctc 58373

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>gb|AF007261.1| Reclinomonas americana mitochondrion, complete genome
          Length = 69034

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ggtgccacaatattacaagc 157
             ||||||||||||||||||||
Sbjct: 16452 ggtgccacaatattacaagc 16471

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>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
             complete sequence
          Length = 159502

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gacaataattcacagagatc 178
             ||||||||||||||||||||
Sbjct: 49150 gacaataattcacagagatc 49131



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 159  gacaataattcacagagatc 178
            ||||||||||||||||||||
Sbjct: 1874 gacaataattcacagagatc 1855

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>emb|AJ720654.1| Gallus gallus mRNA for hypothetical protein, clone 22n21
          Length = 3761

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 502  ctccacctttttcattccat 521
            ||||||||||||||||||||
Sbjct: 3355 ctccacctttttcattccat 3374

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>emb|CR860807.1| Pongo pygmaeus mRNA; cDNA DKFZp459H146 (from clone DKFZp459H146)
          Length = 3566

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   ttttacagaaaacatggaaa 104
            ||||||||||||||||||||
Sbjct: 1412 ttttacagaaaacatggaaa 1431

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>gb|AC100850.2| Homo sapiens chromosome 8, clone RP11-235P11, complete sequence
          Length = 72757

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    cagaaaacatggaaaacata 109
             ||||||||||||||||||||
Sbjct: 45667 cagaaaacatggaaaacata 45686

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>gb|AC008005.8| Homo sapiens chromosome 8, clone RP11-44L18, complete sequence
          Length = 142235

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    cagaaaacatggaaaacata 109
             ||||||||||||||||||||
Sbjct: 27585 cagaaaacatggaaaacata 27566

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>emb|CR522890.1| Gallus gallus finished cDNA, clone ChEST394g15
          Length = 883

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 502 ctccacctttttcattccat 521
           ||||||||||||||||||||
Sbjct: 497 ctccacctttttcattccat 516

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 159      gacaataattcacagagatc 178
                ||||||||||||||||||||
Sbjct: 32279567 gacaataattcacagagatc 32279548



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 159      gacaataattcacagagatc 178
                ||||||||||||||||||||
Sbjct: 32232295 gacaataattcacagagatc 32232276

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 495      caccctcctccacctttttc 514
                ||||||||||||||||||||
Sbjct: 15998569 caccctcctccacctttttc 15998588

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>gb|AC016716.6| Homo sapiens BAC clone RP11-312I3 from 2, complete sequence
          Length = 214269

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     ccttttttacagaaaacatg 100
              ||||||||||||||||||||
Sbjct: 184925 ccttttttacagaaaacatg 184944

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>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0618D11
          Length = 150103

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   caccctcctccacctttttc 514
             ||||||||||||||||||||
Sbjct: 27298 caccctcctccacctttttc 27317

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>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0031P18
          Length = 156535

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    caccctcctccacctttttc 514
              ||||||||||||||||||||
Sbjct: 132018 caccctcctccacctttttc 132037

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>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11,
              complete sequence
          Length = 234851

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    aataattcacaaattgttaa 200
              ||||||||||||||||||||
Sbjct: 104848 aataattcacaaattgttaa 104867

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>emb|AL512545.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0808H03, complete
             sequence
          Length = 42793

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gacaataattcacagagatc 178
             ||||||||||||||||||||
Sbjct: 39039 gacaataattcacagagatc 39020

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>emb|AL732333.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0613A10, complete
             sequence
          Length = 77572

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gacaataattcacagagatc 178
             ||||||||||||||||||||
Sbjct: 48795 gacaataattcacagagatc 48776

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>gb|U51559.1|U51559 Homo sapiens cosmid clone N65D1 from 22q12, complete sequence
          Length = 39448

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    tggaaaacatacatacaggt 118
             ||||||||||||||||||||
Sbjct: 18520 tggaaaacatacatacaggt 18501

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>gb|AF100165.1|AF100165 Xenopus laevis polo-like kinase kinase 1 (xPlkk1) mRNA, complete cds
          Length = 3329

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 153  caagcagacaataattcacagaga 176
            |||||||||||| |||||||||||
Sbjct: 1225 caagcagacaattattcacagaga 1248

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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 184     aattcacaaattgttaaatg 203
               ||||||||||||||||||||
Sbjct: 3376483 aattcacaaattgttaaatg 3376502

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>emb|BX572639.11| Zebrafish DNA sequence from clone CH211-209J5 in linkage group 11,
             complete sequence
          Length = 145689

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aataattcacaaattgttaa 200
             ||||||||||||||||||||
Sbjct: 66211 aataattcacaaattgttaa 66230

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>gb|AC148456.2| Xenopus tropicalis clone CH216-168B18, complete sequence
          Length = 145394

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   ccacattaattttccataga 433
             ||||||||||||||||||||
Sbjct: 10274 ccacattaattttccataga 10293


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,315,329
Number of Sequences: 3902068
Number of extensions: 6315329
Number of successful extensions: 123640
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123254
Number of HSP's gapped (non-prelim): 384
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result