ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TYDC2_PAPSO (P54769) Tyrosine/DOPA decarboxylase 2 [Includes: DO... 63 4e-10
2TYDC3_PAPSO (P54770) Tyrosine/DOPA decarboxylase 3 [Includes: DO... 62 1e-09
3TYDC5_PAPSO (P54771) Tyrosine/DOPA decarboxylase 5 [Includes: DO... 57 2e-08
4TYDC1_PAPSO (P54768) Tyrosine/DOPA decarboxylase 1 [Includes: DO... 57 3e-08
5TYDC1_ARATH (Q8RY79) Tyrosine decarboxylase 1 (EC 4.1.1.25) 51 2e-06
6DDC_CATRO (P17770) Aromatic-L-amino-acid decarboxylase (EC 4.1.1... 48 1e-05
7TYDC2_PETCR (Q06086) Tyrosine decarboxylase 2 (EC 4.1.1.25) 47 2e-05
8TYDC3_PETCR (Q06087) Tyrosine decarboxylase 3 (EC 4.1.1.25) 47 2e-05
9TYDC4_PETCR (Q06088) Tyrosine decarboxylase 4 (EC 4.1.1.25) 47 2e-05
10TYDC2_ARATH (Q9M0G4) Probable tyrosine decarboxylase 2 (EC 4.1.1... 42 0.001
11ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219 30 4.0
12DPAL_ECOLI (P66899) Putative diaminopropionate ammonia-lyase (EC... 29 6.8
13DPAL_ECOL6 (P66900) Putative diaminopropionate ammonia-lyase (EC... 29 6.8
14DPAL_ECO57 (P66901) Putative diaminopropionate ammonia-lyase (EC... 29 6.8
15FINC_RAT (P04937) Fibronectin precursor (FN) 28 8.9
16FINC_MOUSE (P11276) Fibronectin precursor (FN) 28 8.9

>TYDC2_PAPSO (P54769) Tyrosine/DOPA decarboxylase 2 [Includes: DOPA|
           decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)]
          Length = 531

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 30/52 (57%), Positives = 40/52 (76%)
 Frame = -2

Query: 465 VNAVTSGPYMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGK 310
           VNA T   YM+ A VGG++M+R AVGSTLTE+ HV + WK++Q+ A +ILGK
Sbjct: 473 VNA-TGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIYAWKILQEHADLILGK 523



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>TYDC3_PAPSO (P54770) Tyrosine/DOPA decarboxylase 3 [Includes: DOPA|
           decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)]
          Length = 533

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 27/50 (54%), Positives = 37/50 (74%)
 Frame = -2

Query: 453 TSGPYMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGKME 304
           T   YM+ A VGG++M+R AVGSTLTE+ HV H W+V+Q+ A +IL K +
Sbjct: 478 TGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIHAWEVLQEHADLILSKFD 527



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>TYDC5_PAPSO (P54771) Tyrosine/DOPA decarboxylase 5 [Includes: DOPA|
           decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)]
          Length = 523

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 24/46 (52%), Positives = 35/46 (76%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGKME 304
           YM+ A VGG++M+R AVG+TLTE+ HV+  WKV+Q+    ILG ++
Sbjct: 473 YMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEHTDAILGTVD 518



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>TYDC1_PAPSO (P54768) Tyrosine/DOPA decarboxylase 1 [Includes: DOPA|
           decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)]
          Length = 518

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGKM 307
           YM+ A VGG++M+R AVG+TLTE+ HV   WKVVQ+    ILG +
Sbjct: 469 YMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDAILGAL 513



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>TYDC1_ARATH (Q8RY79) Tyrosine decarboxylase 1 (EC 4.1.1.25)|
          Length = 490

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 20/44 (45%), Positives = 31/44 (70%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGK 310
           +MS   + G  +LRCA+G+ LTE+ HV   WK++Q++AS +L K
Sbjct: 447 FMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEEASYLLHK 490



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>DDC_CATRO (P17770) Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28) (AADC)|
           (DOPA decarboxylase) (Tryptophan decarboxylase)
          Length = 500

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -2

Query: 453 TSGPYMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQ 337
           T   YM+   VGG++MLR AVGS+LTE+HHV   W ++Q
Sbjct: 452 TGRVYMTHTIVGGIYMLRLAVGSSLTEEHHVRRVWDLIQ 490



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>TYDC2_PETCR (Q06086) Tyrosine decarboxylase 2 (EC 4.1.1.25)|
          Length = 514

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 31/42 (73%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVIL 316
           Y+S   +GG++++R A+G TLT+ +HV+  WKV+QD A  +L
Sbjct: 459 YVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHAGALL 500



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>TYDC3_PETCR (Q06087) Tyrosine decarboxylase 3 (EC 4.1.1.25)|
          Length = 516

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 31/42 (73%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVIL 316
           Y+S   +GG++++R A+G TLT+ +HV+  WKV+QD A  +L
Sbjct: 461 YVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADALL 502



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>TYDC4_PETCR (Q06088) Tyrosine decarboxylase 4 (EC 4.1.1.25)|
          Length = 508

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 31/42 (73%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVIL 316
           Y+S   +GG++++R A+G TLT+ +HV+  WKV+QD A  +L
Sbjct: 460 YVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADALL 501



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>TYDC2_ARATH (Q9M0G4) Probable tyrosine decarboxylase 2 (EC 4.1.1.25)|
          Length = 545

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = -2

Query: 441 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQAS 325
           ++S   + G F+LR AVG+ LTE+ HV   W+++Q  AS
Sbjct: 499 FISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS 537



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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 382 PHGATPRCPWMEGRAGSGLRDPWEDG 305
           P G TP  P  EG  GSGL  P E G
Sbjct: 691 PSGETPPSPSQEGEEGSGLSRPGEAG 716



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>DPAL_ECOLI (P66899) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)|
           (Diaminopropionatase) (Alpha,beta-diaminopropionate
           ammonia-lyase)
          Length = 398

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 381 LTEQHHVAHGWKVVQDQA 328
           LT QH   HGW+VVQD A
Sbjct: 174 LTMQHAQQHGWEVVQDTA 191



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>DPAL_ECOL6 (P66900) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)|
           (Diaminopropionatase) (Alpha,beta-diaminopropionate
           ammonia-lyase)
          Length = 398

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 381 LTEQHHVAHGWKVVQDQA 328
           LT QH   HGW+VVQD A
Sbjct: 174 LTMQHAQQHGWEVVQDTA 191



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>DPAL_ECO57 (P66901) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)|
           (Diaminopropionatase) (Alpha,beta-diaminopropionate
           ammonia-lyase)
          Length = 398

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 381 LTEQHHVAHGWKVVQDQA 328
           LT QH   HGW+VVQD A
Sbjct: 174 LTMQHAQQHGWEVVQDTA 191



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>FINC_RAT (P04937) Fibronectin precursor (FN)|
          Length = 2477

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 398 VRWGAPSRSNTTLPMDGRSCRIRPP*SLGRWRSSTPSALSNLYSI 264
           ++W AP  S+ T  +     R RP  S GRW+ +T     N Y+I
Sbjct: 628 IQWNAPEPSHITKYI----LRWRPKTSTGRWKEATIPGHLNSYTI 668



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>FINC_MOUSE (P11276) Fibronectin precursor (FN)|
          Length = 2477

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 398 VRWGAPSRSNTTLPMDGRSCRIRPP*SLGRWRSSTPSALSNLYSI 264
           ++W AP  S+ T  +     R RP  S GRW+ +T     N Y+I
Sbjct: 628 IQWNAPEPSHITKYI----LRWRPKTSTGRWKEATIPGHLNSYTI 668


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,045,871
Number of Sequences: 219361
Number of extensions: 1563475
Number of successful extensions: 3564
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3563
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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