ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39a04 |
|---|---|
| Clone Library Name | barley_pub |
>VATC_YEAST (P31412) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) (V-ATPase 42 kDa subunit) Length = 391 Score = 77.4 bits (189), Expect = 2e-14 Identities = 46/142 (32%), Positives = 67/142 (47%) Frame = -1 Query: 540 REKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLALR 361 REK++ PR A Q + +RL +T Y + + W H+ ALR Sbjct: 250 REKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALR 309 Query: 360 VFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDDSA 181 V+VE+VLRYGLP F I+ + L ++ +LGGNAF +D KG++ K D++ Sbjct: 310 VYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTS 369 Query: 180 LTAEMQSSGHAGDQEYTAYVFY 115 L D EY +V Y Sbjct: 370 L----HQYASLVDTEYEPFVMY 387
>VATC_MANSE (Q9U5N1) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 385 Score = 70.1 bits (170), Expect = 4e-12 Identities = 47/143 (32%), Positives = 67/143 (46%) Frame = -1 Query: 540 REKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLALR 361 RE+++ R +L D +KQ+G +R + +SE WIHV ALR Sbjct: 241 RERKFVVREFAYNEADLVAGKNEITKLLTDKKKQFGPLVRWLKVNFSECFCAWIHVKALR 300 Query: 360 VFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDDSA 181 VFVE+VLRYGLP++F ++ L A Y++L +A N + DS Sbjct: 301 VFVESVLRYGLPVNFQAALLVPSRRSARRLRDTLHALYAHLDHSAHHHAN----AQQDS- 355 Query: 180 LTAEMQSSGHAGDQEYTAYVFYE 112 E+ G G EY YVFY+ Sbjct: 356 --VELAGLGF-GQSEYYPYVFYK 375
>VATC_MOUSE (Q9Z1G3) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 1/148 (0%) Frame = -1 Query: 546 KCREKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLA 367 K RE ++ R +L+ D +KQ+G +R + +SE+ + WIH+ A Sbjct: 239 KARENKFIVRDFQYNEEEMKADKEEMTELSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKA 298 Query: 366 LRVFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDD 187 LRVFVE+VLRYGLP++F ++Q + L Y +L +A Sbjct: 299 LRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSSA------------A 346 Query: 186 SALTAEMQSSG-HAGDQEYTAYVFYEFE 106 + + A M G + QEY YV+Y+ + Sbjct: 347 AIIDAPMDIPGLNLSQQEYYPYVYYKID 374
>VATC_HUMAN (P21283) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 68.6 bits (166), Expect = 1e-11 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 1/148 (0%) Frame = -1 Query: 546 KCREKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLA 367 K RE ++ R +L+ D +KQ+G +R + +SE+ + WIHV A Sbjct: 239 KARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKA 298 Query: 366 LRVFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDD 187 LRVFVE+VLRYGLP++F ++Q + L Y +L +A Sbjct: 299 LRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSA------------A 346 Query: 186 SALTAEMQSSG-HAGDQEYTAYVFYEFE 106 + + A M G + QEY YV+Y+ + Sbjct: 347 AIIDAPMDIPGLNLSQQEYYPYVYYKID 374
>VATC_BOVIN (P21282) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 67.8 bits (164), Expect = 2e-11 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 1/148 (0%) Frame = -1 Query: 546 KCREKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLA 367 K RE ++ R +L+ D +KQ+G +R + +SE+ + WIHV A Sbjct: 239 KARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKA 298 Query: 366 LRVFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDD 187 LRVFVE+VLRYGLP++F ++Q + L Y +L +A Sbjct: 299 LRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYELYKHLDSSA------------A 346 Query: 186 SALTAEMQSSG-HAGDQEYTAYVFYEFE 106 + + A M G + QEY YV+Y+ + Sbjct: 347 AIIDAPMDIPGLNLSQQEYYPYVYYKID 374
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 65.1 bits (157), Expect = 1e-10 Identities = 45/143 (31%), Positives = 69/143 (48%) Frame = -1 Query: 540 REKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLALR 361 RE+++ R +L D +KQ+G +R + +SE+ IHV ALR Sbjct: 569 RERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALR 628 Query: 360 VFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDDSA 181 VFVE+VLRYGLP++F +++ + L+ Y +L G + G G V D+ Sbjct: 629 VFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAG----GAVSSADN- 683 Query: 180 LTAEMQSSGHAGDQEYTAYVFYE 112 ++ G G EY YVFY+ Sbjct: 684 --VDIPGLGF-GQSEYFPYVFYK 703
>VATC_SCHPO (Q9HDW6) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 394 Score = 60.8 bits (146), Expect = 2e-09 Identities = 42/144 (29%), Positives = 61/144 (42%) Frame = -1 Query: 546 KCREKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLA 367 K RE ++T R A ++ LR +SES WIH+ Sbjct: 245 KAREAKYTIREFTFEQGLRETEQSEFDDAAVKEKRMLSSLLRYASIAFSESFQGWIHLKC 304 Query: 366 LRVFVETVLRYGLPLDFVCGIVQTDXXXXXXXXANLDASYSYLGGNAFGRDNKGRVKKDD 187 L V+VE++LRYGLP DF I Q L + Y+YL N G + +VK D Sbjct: 305 LCVYVESILRYGLPPDFSSVIFQPMAKSEVKIKNILLSKYAYLAQNPVGNN---KVKNVD 361 Query: 186 SALTAEMQSSGHAGDQEYTAYVFY 115 S+ + + D+EY +V + Sbjct: 362 SSAGLDESMADLNLDEEYLPFVLF 385
>VATC_CAEEL (Q9XXU9) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 384 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -1 Query: 462 LAKDAQKQWGEALRLGRTGYSESAMIWIHVLALRVFVETVLRYGLPLDFVCGIVQTDXXX 283 L + Q+Q+ +R + + E +IH+ ALRVFVE+VLRYGLP++F +++ Sbjct: 270 LMAEKQRQYAPLIRWLKINFGEIFAAYIHIKALRVFVESVLRYGLPVNFQAAVIEPAKGQ 329 Query: 282 XXXXXANLDASYSYLGGNAFGRDNKGRVKKDDSALTAEMQSSGHAGDQEYTAYVFYE 112 L Y +L G+A G + +D AL + G EY YVF++ Sbjct: 330 QKKLRQELHKLYIHLDGSAAGPID---TLEDSPALMS-------LGVNEYYPYVFFK 376
>VATC_ASCSS (Q9NDR5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 384 Score = 58.2 bits (139), Expect = 2e-08 Identities = 42/118 (35%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Frame = -1 Query: 462 LAKDAQKQWGEALRLGRTGYSESAMIWIHVLALRVFVETVLRYGLPLDFVCGIVQTDXXX 283 +A + +K G LR + +SE WIH+ ALRVFVE+VLRYGLP++F ++ Sbjct: 269 IASEKRKMLGPLLRWLKVNFSEVFTAWIHIKALRVFVESVLRYGLPVNFQAVVLDPPKKN 328 Query: 282 XXXXXANLDASYSYLGGNAFGRDNKGRVKKDDSALTAEMQSSG-HAGDQEYTAYVFYE 112 L+ Y L D+ G D AE G G QEY YVFY+ Sbjct: 329 RKRLRDVLNNLYCKL-------DSTGLTNVD-----AEDSVPGLSLGMQEYYPYVFYK 374
>VATC_DICDI (P54648) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 368 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -1 Query: 462 LAKDAQKQWGEALRLGRTGYSESAMIWIHVLALRVFVETVLRYGLPLDFVCGIVQTDXXX 283 L +D + +R R + E+ M W+H+ +RVFVE+VLR+G+P +F +++ Sbjct: 265 LTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRVFVESVLRFGIPFNFQAILMKPQKGA 324 Query: 282 XXXXXANLDASYSYLGGNAFGRDNKGRVKKDDS 184 L + YLG G+ + DDS Sbjct: 325 DKKVRDILFDQFKYLGSAHI----SGKNETDDS 353
>VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 375 Score = 40.4 bits (93), Expect = 0.003 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = -1 Query: 540 REKRWTPRXXXXXXXXXXXXXXXXXQLAKDAQKQWGEALRLGRTGYSESAMIWIHVLALR 361 REK + R +L +D + L+ T Y E W+H A+R Sbjct: 241 REKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVR 300 Query: 360 VFVETVLRYGLPLDFVCGIV 301 F E+++RYGLP F+ ++ Sbjct: 301 TFAESIMRYGLPPAFLACVL 320
>TSH_DROME (P22265) Protein teashirt| Length = 954 Score = 35.8 bits (81), Expect = 0.081 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +3 Query: 18 HCSLNSIPTMLFYSLPPNLPRPKHHHST---QPQTHRRR 125 HC +N P F +LP N P+P+HHH T PQ H R Sbjct: 378 HCGVNVPP---FGNLPSNNPQPQHHHPTPPPPPQNHNLR 413
>DAPB_CAUCR (Q9A2L1) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)| Length = 257 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/55 (29%), Positives = 30/55 (54%) Frame = -1 Query: 462 LAKDAQKQWGEALRLGRTGYSESAMIWIHVLALRVFVETVLRYGLPLDFVCGIVQ 298 LA++A G AL +G TG+S+ + I A ++ + Y L ++ + G+V+ Sbjct: 71 LAEEAAANGGPALVIGSTGFSDEQLDRIDAAATKIVIVRSGNYSLGVNMLMGLVR 125
>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein| 5.1) (Ultrahigh sulfur keratin-associated protein 5.1) Length = 278 Score = 30.0 bits (66), Expect = 4.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 383 GSTCWRCVCLSRRCCGTGCRWTLC 312 GS+C +C C CC +GC + C Sbjct: 231 GSSCSQCSCCKPCCCSSGCGSSCC 254
>CAS1_BOVIN (P02662) Alpha-S1-casein precursor| Length = 214 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 274 LLCLLGVRLNNPTHKVQRQPVPQHRLDKHTQRQHVDP 384 L CL+ V L P H ++ Q +PQ L+++ R V P Sbjct: 6 LTCLVAVALARPKHPIKHQGLPQEVLNENLLRFFVAP 42
>NORM_PSEAE (Q9HTR0) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 488 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = -3 Query: 394 RHDLDPRAGAACVCRD----GAAVRAAAGLCVWD 305 RH D AGAA R GAA+ AAGL +W+ Sbjct: 76 RHGCDDAAGAAAAARSGLWVGAALALAAGLLLWN 109
>AROB_PYRFU (Q8U0A8) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 335 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 302 TIPHTKSSGSPYRSTVSTNTRSASTWIQIMALSLYPVRPSRSASP 436 T+P SS SPY+ V TNT W++ + L +P P Sbjct: 11 TLPDLLSSLSPYKVVVLTNTTLKELWLEEVLTWLKEFKPQTIVVP 55
>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Frame = +1 Query: 316 KVQRQPVPQHRLDKHTQRQHVDPDHGALAVSRPPEP--QRL 432 ++ R+ P H LD +QH+ H A++ RP P QRL Sbjct: 426 ELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRPASPPHQRL 466
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 29.3 bits (64), Expect = 7.6 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +3 Query: 57 SLPPNLPRPKHHHSTQPQTHRRRMQCTPDPPRV 155 ++PP LP+P S P R C P P V Sbjct: 337 TVPPPLPKPPRSPSRSPSRSPNRSPCVPPAPEV 369
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 403 QRERHDLDPRAGAACVCRDGAAVRAAAGLCVWD 305 +RERH + GA + DGA ++A A L WD Sbjct: 992 ERERHKVP--YGATLMVTDGAKIKAGAVLATWD 1022
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 403 QRERHDLDPRAGAACVCRDGAAVRAAAGLCVWD 305 +RERH + GA + DGAA++A L WD Sbjct: 997 ERERHKIP--YGATLLQLDGAAIKAGTQLATWD 1027
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 403 QRERHDLDPRAGAACVCRDGAAVRAAAGLCVWD 305 +RERH + GA + DGAA++A L WD Sbjct: 997 ERERHKIP--YGATLLQLDGAAIKAGTQLATWD 1027
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -3 Query: 403 QRERHDLDPRAGAACVCRDGAAVRAAAGLCVWD 305 +RERH + GA + DGAA++A L WD Sbjct: 997 ERERHKIP--YGATLLQLDGAAIKAGTQLATWD 1027
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 403 QRERHDLDPRAGAACVCRDGAAVRAAAGLCVWD 305 +RERH + GA + +DG A++A L WD Sbjct: 998 ERERHKIP--YGATLLVQDGQAIKAGTQLATWD 1028 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,042,474 Number of Sequences: 219361 Number of extensions: 931846 Number of successful extensions: 3667 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3644 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
