ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_747353.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g10810) partial mRNA Length = 1176 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 320 tccagcggcagcccgtaccgcagcaccgtctcgacaaacacacgcagcgccagcacgtgg 379 ||||| ||||| |||||||||||||| ||||| |||||||| ||||| | ||||||||| Sbjct: 959 tccagaggcagaccgtaccgcagcacggtctcaacaaacacccgcagaacaagcacgtgg 900 Query: 380 atcca 384 ||||| Sbjct: 899 atcca 895
>ref|XM_953529.1| Neurospora crassa OR74A hypothetical protein (NCU09897.1) partial mRNA Length = 1158 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Minus Query: 320 tccagcggcagcccgtaccgcagcaccgtctcgacaaacacacg 363 ||||| ||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 947 tccagaggcagaccgtatcgcagcactgtctcgacaaaaacacg 904
>ref|XM_329644.1| Neurospora crassa OR74A hypothetical protein (NCU09897.1) partial mRNA Length = 1158 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Minus Query: 320 tccagcggcagcccgtaccgcagcaccgtctcgacaaacacacg 363 ||||| ||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 947 tccagaggcagaccgtatcgcagcactgtctcgacaaaaacacg 904
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Plus Query: 160 cgactgcatctcggcggtcagcgccgagtc 189 |||||||| |||||||||||||||| |||| Sbjct: 702448 cgactgcacctcggcggtcagcgcccagtc 702477
>emb|AL354862.11| Human DNA sequence from clone RP11-83L6 on chromosome 9 Contains an olfactory receptor pseudsogene, the SYK gene for spleen tyrosine kinase and a CpG island, complete sequence Length = 153954 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 aggttggcttttgccttctttg 281 |||||||||||||||||||||| Sbjct: 49720 aggttggcttttgccttctttg 49699
>gb|AC021581.10| Homo sapiens chromosome 17, clone RP11-956N15, complete sequence Length = 181607 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 aggttggcttttgccttctttg 281 |||||||||||||||||||||| Sbjct: 98703 aggttggcttttgccttctttg 98724
>gb|AC010612.8| Homo sapiens chromosome 5 clone CTB-91C24, complete sequence Length = 139873 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 aggttggcttttgccttctttg 281 |||||||||||||||||||||| Sbjct: 61350 aggttggcttttgccttctttg 61371
>gb|AE009692.1| Brucella melitensis 16M chromosome II, section 54 of 107 of the complete sequence Length = 6633 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 160 cgactgcatctcggcggtcagcgccgagtc 189 |||||||| |||||||||||||||| |||| Sbjct: 6079 cgactgcacctcggcggtcagcgcccagtc 6050
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 160 cgactgcatctcggcggtcagcgccgagtc 189 |||||||| |||||||||||||||| |||| Sbjct: 514695 cgactgcacctcggcggtcagcgcccagtc 514666
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 160 cgactgcatctcggcggtcagcgccgagtc 189 |||||||| |||||||||||||||| |||| Sbjct: 514683 cgactgcacctcggcggtcagcgcccagtc 514654
>ref|XM_510991.1| PREDICTED: Pan troglodytes LOC454118 (LOC454118), mRNA Length = 1711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 cctcctcctccttgccgccct 500 ||||||||||||||||||||| Sbjct: 418 cctcctcctccttgccgccct 398
>ref|XM_464681.1| Oryza sativa (japonica cultivar-group), mRNA Length = 813 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 477 gggcctcctcctccttgccgccctc 501 ||||||| ||||||||||||||||| Sbjct: 147 gggcctcatcctccttgccgccctc 171
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 481 ctcctcctccttgccgccctccttg 505 |||||||||||||||||| |||||| Sbjct: 2187205 ctcctcctccttgccgccgtccttg 2187229
>gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, complete sequence Length = 186258 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gctcgctcaattctatcccca 42 ||||||||||||||||||||| Sbjct: 89428 gctcgctcaattctatcccca 89448
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 atctcggcggtcagcgccgag 187 ||||||||||||||||||||| Sbjct: 2492617 atctcggcggtcagcgccgag 2492637
>ref|XM_567138.1| Cryptococcus neoformans var. neoformans JEC21 siderochrome-iron (ferrioxamine) uptake transporter (CNA07920) partial mRNA Length = 1968 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 481 ctcctcctccttgccgccctccttg 505 |||||||||||||||||| |||||| Sbjct: 871 ctcctcctccttgccgccgtccttg 895
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 ctgccgaacgcgttgccgccg 238 ||||||||||||||||||||| Sbjct: 1647237 ctgccgaacgcgttgccgccg 1647257
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 agtccagcggcagcccgtacc 338 ||||||||||||||||||||| Sbjct: 367491 agtccagcggcagcccgtacc 367471
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 ctccttgccgccctccttgta 507 ||||||||||||||||||||| Sbjct: 2481415 ctccttgccgccctccttgta 2481395
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 cctcctcctccttgccgccct 500 ||||||||||||||||||||| Sbjct: 964834 cctcctcctccttgccgccct 964814
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 tcctcctccttgccgccctcc 502 ||||||||||||||||||||| Sbjct: 34019591 tcctcctccttgccgccctcc 34019571 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cctcctgggcctcctcctcct 491 ||||||||||||||||||||| Sbjct: 23234793 cctcctgggcctcctcctcct 23234813 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 477 gggcctcctcctccttgccgccctc 501 ||||||| ||||||||||||||||| Sbjct: 6676442 gggcctcatcctccttgccgccctc 6676466
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 468 ccgcctcctgggcctcctcctccttgccgccct 500 ||||||||||||||||| || ||| |||||||| Sbjct: 171514 ccgcctcctgggcctcccccgcctggccgccct 171546
>dbj|AK176976.1| Mus musculus cDNA, clone:Y0G0101C21, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000008999, based on BLAT search Length = 601 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 cctcctgggcctcctcctcct 491 ||||||||||||||||||||| Sbjct: 82 cctcctgggcctcctcctcct 62
>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_D07 Length = 110585 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 tcctcctccttgccgccctcc 502 ||||||||||||||||||||| Sbjct: 46866 tcctcctccttgccgccctcc 46846
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 cctcctgggcctcctcctcct 491 ||||||||||||||||||||| Sbjct: 92024 cctcctgggcctcctcctcct 92044
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 477 gggcctcctcctccttgccgccctc 501 ||||||| ||||||||||||||||| Sbjct: 110817 gggcctcatcctccttgccgccctc 110841
>dbj|AK103079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118E17, full insert sequence Length = 2400 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 tcctcctccttgccgccctcc 502 ||||||||||||||||||||| Sbjct: 367 tcctcctccttgccgccctcc 347
>dbj|AK101070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023P18, full insert sequence Length = 2471 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 tcctcctccttgccgccctcc 502 ||||||||||||||||||||| Sbjct: 367 tcctcctccttgccgccctcc 347
>ref|NM_210388.1| Eremothecium gossypii AER177Wp (AER177W), mRNA Length = 2376 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 cctcctcctccttgccgccct 500 ||||||||||||||||||||| Sbjct: 220 cctcctcctccttgccgccct 200
>gb|AC150898.2| Mus musculus BAC clone RP23-196E12 from 19, complete sequence Length = 231474 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 467 tccgcctcctgggcctcctcctcct 491 |||||||||||| |||||||||||| Sbjct: 84290 tccgcctcctggtcctcctcctcct 84314
>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence Length = 45702 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 481 ctcctcctccttgccgccctccttg 505 |||||||||||||||||||| |||| Sbjct: 24893 ctcctcctccttgccgcccttcttg 24917
>emb|AL773533.12| Mouse DNA sequence from clone RP23-159H12 on chromosome 2, complete sequence Length = 137804 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 467 tccgcctcctgggcctcctcctccttgcc 495 |||||||||| | |||||||||||||||| Sbjct: 68990 tccgcctcctcgtcctcctcctccttgcc 69018
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 468 ccgcctcctgggcctcctcctccttgccgccct 500 ||||||||||||||||| || ||| |||||||| Sbjct: 1718286 ccgcctcctgggcctcccccgcctggccgccct 1718254
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 catctcggcggtcagcgccg 185 |||||||||||||||||||| Sbjct: 3571142 catctcggcggtcagcgccg 3571123
>gb|AC163617.5| Mus musculus BAC clone RP23-115O21 from chromosome 8, complete sequence Length = 224322 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 gctcgctcaattctatcccc 41 |||||||||||||||||||| Sbjct: 191464 gctcgctcaattctatcccc 191483
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gggcctcctcctccttgccg 496 |||||||||||||||||||| Sbjct: 855198 gggcctcctcctccttgccg 855179
>ref|NM_193942.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 735 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tggcgagctggtccgcctcc 475 |||||||||||||||||||| Sbjct: 204 tggcgagctggtccgcctcc 223
>ref|XM_368151.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01093.4) partial mRNA Length = 990 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gcccgtaccgcagcaccgtctcga 353 |||||||||||||| ||||||||| Sbjct: 928 gcccgtaccgcagcgccgtctcga 905
>ref|XM_958294.1| Neurospora crassa OR74A hypothetical protein (NCU09623.1) partial mRNA Length = 534 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ctgcttctgcgcatccttgg 458 |||||||||||||||||||| Sbjct: 510 ctgcttctgcgcatccttgg 491
>ref|XM_330272.1| Neurospora crassa OR74A hypothetical protein (NCU09623.1) partial mRNA Length = 534 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ctgcttctgcgcatccttgg 458 |||||||||||||||||||| Sbjct: 510 ctgcttctgcgcatccttgg 491
>ref|XM_653707.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1195.2), mRNA Length = 1062 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 191 tccttcttgacgcggcccttgttgtccc 218 ||||||||||| |||||||| ||||||| Sbjct: 980 tccttcttgacccggcccttcttgtccc 953 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 314 acaaagtccagcggcagcccgtaccgcagcaccgtctcgacaaa 357 |||||||||||||| || ||||| || || || ||||||||||| Sbjct: 854 acaaagtccagcgggaggccgtagcggagtacggtctcgacaaa 811
>ref|XM_846080.1| PREDICTED: Canis familiaris similar to adipocyte enhancer binding protein 1 precursor (LOC608927), mRNA Length = 2601 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 481 ctcctcctccttgccgccctcctt 504 |||||||||||||| ||||||||| Sbjct: 519 ctcctcctccttgcggccctcctt 496
>gb|AC006334.3| Homo sapiens BAC clone RP11-421B22 from 7, complete sequence Length = 141899 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 gcctcctcctccttgccgccctcc 502 |||||||||||||||| ||||||| Sbjct: 49596 gcctcctcctccttgcagccctcc 49573
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 tgccgccgaggtagctgtagctggcgtc 258 |||||||||||||||||| |||| |||| Sbjct: 2405138 tgccgccgaggtagctgttgctgccgtc 2405111 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cgcgcggcgtccagcgcttc 535 |||||||||||||||||||| Sbjct: 1280633 cgcgcggcgtccagcgcttc 1280614
>emb|CR937052.2| Rattus norvegicus chromosome 1 BAC CH230-445C15, complete sequence Length = 151854 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 acctcaaactcatagaagac 123 |||||||||||||||||||| Sbjct: 26536 acctcaaactcatagaagac 26517
>gb|AC121819.3| Mus musculus BAC clone RP23-460F21 from chromosome 8, complete sequence Length = 194109 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gctcgctcaattctatcccc 41 |||||||||||||||||||| Sbjct: 108953 gctcgctcaattctatcccc 108934
>emb|AL591409.3| Human DNA sequence from clone RP11-161K18 on chromosome X, complete sequence Length = 133516 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 catcactctacacaacctcaaact 113 ||||||||||| |||||||||||| Sbjct: 63415 catcactctacccaacctcaaact 63438
>emb|AL356124.17| Human DNA sequence from clone RP1-69D17 on chromosome 6 The two published cDNAs for gene LAMA2 have a deletion with respect to our clone, at clone position 75717. Consequently our translation is different from that published. We have resequenced 24 chromosomes from different individuals that all support the sequence presented here. ESTs also support our sequence, complete sequence Length = 106687 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 accgtctcgacaaacacacgcagc 367 |||||||||| ||||||||||||| Sbjct: 60569 accgtctcgataaacacacgcagc 60546
>emb|AL021329.1|HS239K6 Human DNA sequence from clone RP1-239K6 on chromosome 6p22.3-23 Contains a novel gene, complete sequence Length = 105162 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 gcgtccagcgcttctccctg 541 |||||||||||||||||||| Sbjct: 9547 gcgtccagcgcttctccctg 9566
>ref|XM_969375.1| PREDICTED: Tribolium castaneum similar to CG1975-PA (LOC663320), mRNA Length = 1505 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgacgcggcccttgttgtcc 217 |||||||||||||||||||| Sbjct: 505 tgacgcggcccttgttgtcc 486
>emb|X91007.1|HMSERS H.marismortui serS gene Length = 2030 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 470 gcctcctgggcctcctcctccttgccgccctccttg 505 |||||||||||||| || ||||||||| ||| |||| Sbjct: 554 gcctcctgggcctcttcgtccttgccgtcctgcttg 519
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 accgcagcaccgtctcgaca 355 |||||||||||||||||||| Sbjct: 1321234 accgcagcaccgtctcgaca 1321215
>emb|AL355931.1|NCB3E4 Neurospora crassa DNA linkage group II BAC clone B3E4 Length = 62421 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ctgcttctgcgcatccttgg 458 |||||||||||||||||||| Sbjct: 37986 ctgcttctgcgcatccttgg 37967
>gb|AC129908.4| Homo sapiens chromosome 18, clone RP11-1147P1, complete sequence Length = 190809 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 gcctcctcctccttgccgccctcc 502 |||||||||||||||| ||||||| Sbjct: 6393 gcctcctcctccttgcagccctcc 6370
>gb|AC010942.8| Homo sapiens, clone RP11-115E5, complete sequence Length = 140730 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 accgtctcgacaaacacacgcagc 367 |||||||||| ||||||||||||| Sbjct: 30403 accgtctcgataaacacacgcagc 30426
>gb|AC087238.25| Homo sapiens 12 BAC RP11-174M10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175998 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 catcactctacacaacctcaaact 113 ||||||||||| |||||||||||| Sbjct: 81449 catcactctacccaacctcaaact 81426
>gb|AE011741.1| Xanthomonas axonopodis pv. citri str. 306, section 119 of 469 of the complete genome Length = 11361 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 cgcgcggcgtccagcgcttc 535 |||||||||||||||||||| Sbjct: 10535 cgcgcggcgtccagcgcttc 10516
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 gcccgagccgcagcgcctcg 433 |||||||||||||||||||| Sbjct: 2865239 gcccgagccgcagcgcctcg 2865258
>gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene sequence Length = 110467 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 gcccgtaccgcagcaccgtctcga 353 |||||||||||||| ||||||||| Sbjct: 57484 gcccgtaccgcagcgccgtctcga 57461
>gb|AC009123.7| Homo sapiens chromosome 16 clone RP11-486L19, complete sequence Length = 197046 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 ccgcctcctgggcctcctcc 487 |||||||||||||||||||| Sbjct: 152262 ccgcctcctgggcctcctcc 152243
>gb|AC160960.5| Mus musculus BAC clone RP24-230O19 from chromosome 13, complete sequence Length = 152915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 caatgctgttttactccctc 62 |||||||||||||||||||| Sbjct: 17622 caatgctgttttactccctc 17603
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 cctcctcctccttgccgccctcct 503 |||||||||||| ||||||||||| Sbjct: 14595484 cctcctcctcctcgccgccctcct 14595461
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ccccacaatgctgttttact 57 |||||||||||||||||||| Sbjct: 13384500 ccccacaatgctgttttact 13384481
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tggcgagctggtccgcctcc 475 |||||||||||||||||||| Sbjct: 16061966 tggcgagctggtccgcctcc 16061985
>gb|AC093390.4| Homo sapiens BAC clone RP11-755H23 from 2, complete sequence Length = 94150 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 479 gcctcctcctccttgccgccctcc 502 |||||||||||||||||| ||||| Sbjct: 12702 gcctcctcctccttgccgtcctcc 12725
>gb|AE001584.1| Borrelia burgdorferi B31 plasmid lp56, complete sequence Length = 52971 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ttttgccttctttgcctgct 287 |||||||||||||||||||| Sbjct: 14871 ttttgccttctttgcctgct 14852
>gb|AC093332.10| Homo sapiens chromosome 18, clone RP11-802O5, complete sequence Length = 112270 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 479 gcctcctcctccttgccgccctcc 502 |||||||||||||||| ||||||| Sbjct: 101919 gcctcctcctccttgcagccctcc 101896
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 cgcgcggcgtccagcgcttc 535 |||||||||||||||||||| Sbjct: 101006 cgcgcggcgtccagcgcttc 101025
>dbj|AP003853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0091E23 Length = 155939 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tggcgagctggtccgcctcc 475 |||||||||||||||||||| Sbjct: 153551 tggcgagctggtccgcctcc 153570
>dbj|AP003854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0093M23 Length = 134578 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tggcgagctggtccgcctcc 475 |||||||||||||||||||| Sbjct: 18129 tggcgagctggtccgcctcc 18148
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1294_G06 Length = 115468 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 cctcctcctccttgccgccctcct 503 |||||||||||| ||||||||||| Sbjct: 93773 cctcctcctcctcgccgccctcct 93750
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cgcccgagccgcagcgcctc 432 |||||||||||||||||||| Sbjct: 2056667 cgcccgagccgcagcgcctc 2056648
>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_B01 Length = 105736 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ccccacaatgctgttttact 57 |||||||||||||||||||| Sbjct: 98938 ccccacaatgctgttttact 98919
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0643D11 Length = 137525 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 480 cctcctcctccttgccgccctcct 503 |||||||||||| ||||||||||| Sbjct: 17151 cctcctcctcctcgccgccctcct 17128
>gb|AC153382.1| Mus musculus 10 BAC RP23-9F3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206125 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ctgcttctgcgcatccttgg 458 |||||||||||||||||||| Sbjct: 125990 ctgcttctgcgcatccttgg 126009
>dbj|AK098383.1| Homo sapiens cDNA FLJ25517 fis, clone CBR06646 Length = 1601 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 ccgcctcctgggcctcctcctcct 491 ||||| |||||||||||||||||| Sbjct: 241 ccgccacctgggcctcctcctcct 218
>dbj|AP004349.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0684A03 Length = 64705 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ccccacaatgctgttttact 57 |||||||||||||||||||| Sbjct: 10259 ccccacaatgctgttttact 10240
>dbj|AK073672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054E07, full insert sequence Length = 690 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 cctcctcctccttgccgccctcct 503 |||||||||||| ||||||||||| Sbjct: 43 cctcctcctcctcgccgccctcct 66
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 470 gcctcctgggcctcctcctccttgccgccctccttg 505 |||||||||||||| || ||||||||| ||| |||| Sbjct: 2498482 gcctcctgggcctcttcgtccttgccgtcctgcttg 2498517
>gb|AC011602.17| Homo sapiens 12 BAC RP11-362A1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97995 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 atgctgttttactccctccc 64 |||||||||||||||||||| Sbjct: 47837 atgctgttttactccctccc 47856
>gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, complete sequence Length = 174529 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 caatgctgttttactccctc 62 |||||||||||||||||||| Sbjct: 5998 caatgctgttttactccctc 6017
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 cttgacgcggcccttgttgtccct 219 ||||||||||||||||||| |||| Sbjct: 2151487 cttgacgcggcccttgttgaccct 2151464
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gcccgtaccgcagcaccgtc 349 |||||||||||||||||||| Sbjct: 698584 gcccgtaccgcagcaccgtc 698565
>emb|AJ249388.1|MSE249388 Manduca sexta mRNA for vacuolar ATPase subunit C (mvC gene) Length = 1826 Score = 40.1 bits (20), Expect = 7.4 Identities = 50/60 (83%) Strand = Plus / Minus Query: 325 cggcagcccgtaccgcagcaccgtctcgacaaacacacgcagcgccagcacgtggatcca 384 |||||||||||||| ||||| | ||| || ||||| ||||||||| ||||||||||| Sbjct: 1001 cggcagcccgtacctaagcacggactcaacgaacacgcgcagcgccttaacgtggatcca 942
>gb|AC010551.3| Homo sapiens chromosome 16 clone RP11-558A11, complete sequence Length = 138783 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 ccgcctcctgggcctcctcc 487 |||||||||||||||||||| Sbjct: 43841 ccgcctcctgggcctcctcc 43822 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,516,050 Number of Sequences: 3902068 Number of extensions: 4516050 Number of successful extensions: 94887 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93143 Number of HSP's gapped (non-prelim): 1744 length of query: 546 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 523 effective length of database: 17,143,297,704 effective search space: 8965944699192 effective search space used: 8965944699192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
