ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.... 62 9e-10
2UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.... 62 9e-10
3UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.... 62 9e-10
4UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.... 62 9e-10
5UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.... 60 5e-09
6UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.... 59 1e-08
7TGDS_MOUSE (Q8VDR7) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46) 37 0.033
8GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) ... 37 0.042
9FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.2... 35 0.095
10Y1055_METJA (Q58455) Hypothetical protein MJ1055 34 0.28
11Y4NL_RHISN (P55584) Hypothetical 38.7 kDa protein y4nL 33 0.47
12ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA prote... 32 0.80
13FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.2... 32 0.80
14ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA prote... 32 1.0
15ARNA_PSE14 (Q48HZ1) Bifunctional polymyxin resistance arnA prote... 32 1.0
16GMDS_HUMAN (O60547) GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (G... 32 1.4
17ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA prote... 31 1.8
18ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA prote... 31 1.8
19ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA prote... 31 1.8
20ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA prote... 31 1.8
21GMD2_ARATH (P93031) GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) ... 31 1.8
22ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA prote... 31 2.3
23ALR_RICPR (Q9ZE52) Alanine racemase (EC 5.1.1.1) 31 2.3
24FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271) (GDP-... 30 3.0
25EXOB_RHIME (P26503) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galact... 30 3.0
26ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA prote... 30 4.0
27GM4D_SHIFL (P0AC91) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (G... 30 4.0
28GM4D_ECOLI (P0AC88) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (G... 30 4.0
29GM4D_ECOL6 (P0AC89) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (G... 30 4.0
30GM4D_ECO57 (P0AC90) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (G... 30 4.0
31ARNA_PHOLL (Q7N3Q7) Bifunctional polymyxin resistance arnA prote... 30 5.2
32GALE_LACHE (Q7WTB1) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galact... 30 5.2
33NU4M_LOCMI (Q36424) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 30 5.2
34DEPD5_HUMAN (O75140) DEP domain-containing protein 5 30 5.2
35GALE_METJA (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2... 29 6.8
36DEPD5_MOUSE (P61460) DEP domain-containing protein 5 29 6.8
37TRUA_HELHP (Q7U328) tRNA pseudouridine synthase A (EC 5.4.99.12)... 29 6.8
38ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA prote... 29 8.9
39VIPB_SALTI (Q04973) Vi polysaccharide biosynthesis protein vipB/... 29 8.9
40GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (G... 29 8.9
41GM4D2_VIBCH (Q56598) Probable GDP-mannose 4,6-dehydratase (EC 4.... 29 8.9
42ERG26_YEAST (P53199) Sterol-4-alpha-carboxylate 3-dehydrogenase,... 29 8.9

>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340
           A+++K  +   S I+F     DDP  RKPDI KAK MLGWEP V L+EGL   +  FRK 
Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394

Query: 339 I 337
           +
Sbjct: 395 L 395



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>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340
           A+++K  +   S I+F     DDP  RKPDI KAK MLGWEP V L+EGL   +  FRK 
Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394

Query: 339 I 337
           +
Sbjct: 395 L 395



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>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340
           A+++K  +   S I+F     DDP  RKPDI KAK MLGWEP V L+EGL   +  FRK 
Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394

Query: 339 I 337
           +
Sbjct: 395 L 395



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>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1)
          Length = 420

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340
           A+++K  +   S I+F     DDP  RKPDI KAK MLGWEP V L+EGL   +  FRK 
Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394

Query: 339 I 337
           +
Sbjct: 395 L 395



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>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UXS-1)
          Length = 418

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 27/61 (44%), Positives = 38/61 (62%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340
           A+++K  +   S I+F P   DDP  R+PDI KAK +LGWEP V L+EGL   +  F + 
Sbjct: 333 AQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSRE 392

Query: 339 I 337
           +
Sbjct: 393 L 393



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>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)|
           (UDP-glucuronate decarboxylase 1) (UXS-1)
          Length = 421

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 28/61 (45%), Positives = 36/61 (59%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340
           A ++K+ +     I F     DDP  RKPDI KAK +LGWEP V L+EGL   +  FRK 
Sbjct: 336 ARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKE 395

Query: 339 I 337
           +
Sbjct: 396 L 396



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>TGDS_MOUSE (Q8VDR7) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)|
          Length = 355

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 516 EVVKETIDPMSTIEFKPNTADDPH--MRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRK 343
           +++KET     T  +    +D PH  MR P  ++    LGW+PKV  +EG+   V  +RK
Sbjct: 274 QLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRK 333



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>GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase 1) (GMD 1)
          Length = 361

 Score = 36.6 bits (83), Expect = 0.042
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -2

Query: 474 FKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTD 352
           F+P   D+    K D +KAK+MLGW+PKV  ++ + +MV +
Sbjct: 301 FRPTEVDN---LKGDASKAKEMLGWKPKVGFEKLVKMMVDE 338



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>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1)
          Length = 328

 Score = 35.4 bits (80), Expect = 0.095
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370
           AE+VKE +     + +  +  D    +  D +K ++M GW+PKV LKEGL
Sbjct: 264 AELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQEM-GWKPKVPLKEGL 312



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>Y1055_METJA (Q58455) Hypothetical protein MJ1055|
          Length = 326

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 14/49 (28%), Positives = 33/49 (67%)
 Frame = -2

Query: 516 EVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370
           E++++ ++  +  +F P    D      D++K++++LG++PKV+++EGL
Sbjct: 261 ELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGL 309



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>Y4NL_RHISN (P55584) Hypothetical 38.7 kDa protein y4nL|
          Length = 356

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 12/21 (57%), Positives = 20/21 (95%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGL 370
           DITKA+++LG+ PK++L+EG+
Sbjct: 322 DITKARKVLGYAPKIALREGM 342



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>ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331
           D   RKP I  A++ L WEPK+ ++E +     DF  R +D
Sbjct: 615 DVEHRKPSIRNARRCLDWEPKIDMQETID-ETLDFFLRTVD 654



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>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2) (AtGER2)
          Length = 328

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370
           AE+VKE +     + +     D    +  D +K    LGW PK+SLK+GL
Sbjct: 264 AELVKEVVGFKGKLVWDTTKPDGTPRKLMDSSKLAS-LGWTPKISLKDGL 312



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>ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 668

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKE 376
           D   RKP I  AK++L WEP V + E
Sbjct: 617 DVEHRKPSIDNAKRLLNWEPTVEMSE 642



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>ARNA_PSE14 (Q48HZ1) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 663

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILDE 328
           D   RKP I  A+Q++GW P + L E +   +  F +  + E
Sbjct: 617 DVSHRKPSIDNARQLIGWTPGIELSETIGKTLDFFLREAMAE 658



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>GMDS_HUMAN (O60547) GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase) (GMD)
          Length = 372

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 507 KETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMV 358
           KET     T++ K     +    + D TKAKQ L W+P+V+  E +  MV
Sbjct: 310 KETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMV 359



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>ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331
           D   RKP I  A + L WEPK+ ++E +     DF  R +D
Sbjct: 615 DVEHRKPSIRNAHRCLDWEPKIDMQETID-ETLDFFLRTVD 654



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>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin|
           resistance protein pmrI) [Includes: UDP-glucuronic acid
           decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase)
           (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase (EC 2.1
          Length = 660

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 441 RKPDITKAKQMLGWEPKVSLKE 376
           RKP I  A++ LGWEP +++++
Sbjct: 619 RKPSIDNARRCLGWEPSIAMRD 640



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>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 441 RKPDITKAKQMLGWEPKVSLKE 376
           RKP I  A++ LGWEP +++++
Sbjct: 619 RKPSIDNARRCLGWEPSIAMRD 640



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>ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA protein (Polymyxin|
           resistance protein pmrI) [Includes: UDP-glucuronic acid
           decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase)
           (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase (EC 2.1
          Length = 660

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331
           D   RKP I  A + L WEPK+ ++E +     DF  R +D
Sbjct: 615 DVEHRKPSIRNAHRCLDWEPKIDMQETID-ETLDFFLRTVD 654



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>GMD2_ARATH (P93031) GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase 2) (GMD 2)
          Length = 373

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = -2

Query: 474 FKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTD 352
           F+P   D+    + D +KAK++LGW+P+V  ++ + +MV +
Sbjct: 313 FRPAEVDN---LQGDASKAKEVLGWKPQVGFEKLVKMMVDE 350



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>ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331
           D   RKP I  A   L WEPK+ ++E +     DF  R +D
Sbjct: 615 DVEHRKPSIRNAHHCLDWEPKIDMQETID-ETLDFFLRTVD 654



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>ALR_RICPR (Q9ZE52) Alanine racemase (EC 5.1.1.1)|
          Length = 404

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +2

Query: 236 NCTEWIQLVKHVSYIRGIQNQIDLSHCCLD------YSSKILLRKSVTIKGRPSLRDTFG 397
           N  E  QL+     ++G+  Q  +SH          Y+   L R  V ++  P+++ +F 
Sbjct: 137 NSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYLEYFPNVKASFA 196

Query: 398 SQPSICFALVISGFLIWGSSAVLGLNSIVDIGSIVSFT 511
           +   I         L    +A+ GLNS++++ S +S+T
Sbjct: 197 NSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYT 234



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>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1) (AtGER1) (AtFX)
          Length = 312

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370
           AE+VKE +     + +     D    +  D +K    LGW PKVSL++GL
Sbjct: 250 AELVKEVVGFEGKLGWDCTKPDGTPRKLMDSSKLAS-LGWTPKVSLRDGL 298



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>EXOB_RHIME (P26503) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)|
          Length = 328

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -2

Query: 510 VKETIDPMSTIEFKPNTADDPHMRKPDIT-------KAKQMLGWEPKVSL 382
           VKE +D +  +  +P        R+ D T       KA+Q+LGWEP+  L
Sbjct: 261 VKELLDAIEKVAKRPFNIGYAERREGDSTTLVANNDKARQVLGWEPQYDL 310



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>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 662

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 441 RKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILDE 328
           RKP I  A+++L W+P + L+E +   +  F    L E
Sbjct: 620 RKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALRE 657



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>GM4D_SHIFL (P0AC91) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase)
          Length = 373

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352
           D TKA + LGW+P+++L+E +  MV +
Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349



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>GM4D_ECOLI (P0AC88) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase)
          Length = 373

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352
           D TKA + LGW+P+++L+E +  MV +
Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349



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>GM4D_ECOL6 (P0AC89) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase)
          Length = 373

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352
           D TKA + LGW+P+++L+E +  MV +
Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349



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>GM4D_ECO57 (P0AC90) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose|
           dehydratase)
          Length = 373

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352
           D TKA + LGW+P+++L+E +  MV +
Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349



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>ARNA_PHOLL (Q7N3Q7) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 660

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILDE 328
           D   RKP I  A+++L W+P + +K+ +   +  F +  ++E
Sbjct: 615 DVEHRKPSIKNAERLLDWKPTIDMKQTINETLDFFLRGAVEE 656



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>GALE_LACHE (Q7WTB1) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)|
           (UDP-galactose 4-epimerase)
          Length = 330

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 468 PNTADDPHMRKPDITKAKQMLGWEPK 391
           P    DP     D TKA+ +LGW+PK
Sbjct: 280 PRRGGDPDSLVADSTKARTVLGWKPK 305



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>NU4M_LOCMI (Q36424) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 444

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 15/46 (32%)
 Frame = +1

Query: 388 YLWLPT*H--------------LLRLGNIGLSHM-GIISCVGLEFN 480
           +LWLP  H              LL+LG  G+  M  +ISC+GL FN
Sbjct: 201 HLWLPKAHVEAPISGSMILAGILLKLGGYGIFRMMKVISCLGLSFN 246



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>DEPD5_HUMAN (O75140) DEP domain-containing protein 5|
          Length = 1572

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 41  FILQLGVNWKSKTEPNSSRNIAPSPILHSTSIVSHVDKKQFATSVQSHQDGNKFK*FYKD 220
           F+  L   WK K   +    +  S   +    V    +   A+  Q H+ G  ++ FYK 
Sbjct: 199 FLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSVDEFPEINRASIRQDHK-GRFYEDFYKV 257

Query: 221 VIQTQNCTEWIQLV 262
           V+Q +   EW  L+
Sbjct: 258 VVQNERREEWTSLL 271



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>GALE_METJA (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2)|
           (Galactowaldenase) (UDP-galactose 4-epimerase)
          Length = 305

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGLPLMV 358
           DI KA+  LGW+P++ LKEG+  +V
Sbjct: 273 DIKKAES-LGWKPEIDLKEGIKRVV 296



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>DEPD5_MOUSE (P61460) DEP domain-containing protein 5|
          Length = 1527

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = +2

Query: 41  FILQLGVNWKSKTEPNSSRNIAPSPILHSTSIVSHVDKKQFATSVQSHQDGNKFK*FYKD 220
           F+  L   WK K   +    +  S   +    +    +   A S+Q    G  ++ FYK 
Sbjct: 157 FLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEINRA-SIQEDHKGRFYEDFYKV 215

Query: 221 VIQTQNCTEWIQLV 262
           V+Q +   EW  L+
Sbjct: 216 VVQNERREEWTSLL 229



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>TRUA_HELHP (Q7U328) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 248

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 149 DKKQFATSVQSHQDGNKFK*FYKDVIQTQNCTEWIQLVKHVSY 277
           D+  F  ++Q+ Q  + F  F K+   T+NC   I  +KH +Y
Sbjct: 140 DETLFKNALQAFQGQHNFVFFKKNGSYTKNCIRTIFAIKHYTY 182



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>ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA protein [Includes:|
           UDP-glucuronic acid decarboxylase (EC 4.1.1.-)
           (UDP-GlcUA decarboxylase) (ArnAFT);
           UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC
           2.1.2.-) (UDP-L-Ara4N formyltransferase
          Length = 654

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDF 349
           D   RKP+I  AK++L W PK  ++  L  ++  F
Sbjct: 614 DIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINFF 648



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>VIPB_SALTI (Q04973) Vi polysaccharide biosynthesis protein vipB/tviC|
          Length = 348

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGL 370
           DITK K  L +EP+  +KEGL
Sbjct: 310 DITKIKTFLSYEPEFDIKEGL 330



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>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 1) (OsGME-1)
          Length = 378

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 441 RKPDITKAKQMLGWEPKVSLKEGL 370
           R  D T  K+ LGW P + LK+GL
Sbjct: 307 RNSDNTLIKEKLGWAPTMKLKDGL 330



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>GM4D2_VIBCH (Q56598) Probable GDP-mannose 4,6-dehydratase (EC 4.2.1.47)|
           (GDP-D-mannose dehydratase)
          Length = 372

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352
           D +KAKQ LGW P+++++E    MV +
Sbjct: 323 DPSKAKQKLGWTPEITVQEMCAEMVME 349



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>ERG26_YEAST (P53199) Sterol-4-alpha-carboxylate 3-dehydrogenase,|
           decarboxylating (EC 1.1.1.170)
          Length = 349

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -2

Query: 441 RKPDITKAKQMLGWEPKVSLKEGL 370
           R  +I KAK++LG+ P+V ++EG+
Sbjct: 315 RYHNIAKAKKLLGYTPRVGIEEGI 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,983,965
Number of Sequences: 219361
Number of extensions: 1518627
Number of successful extensions: 3354
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3353
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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