ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39a02 |
|---|---|
| Clone Library Name | barley_pub |
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 62.0 bits (149), Expect = 9e-10 Identities = 30/61 (49%), Positives = 38/61 (62%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340 A+++K + S I+F DDP RKPDI KAK MLGWEP V L+EGL + FRK Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394 Query: 339 I 337 + Sbjct: 395 L 395
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 62.0 bits (149), Expect = 9e-10 Identities = 30/61 (49%), Positives = 38/61 (62%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340 A+++K + S I+F DDP RKPDI KAK MLGWEP V L+EGL + FRK Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394 Query: 339 I 337 + Sbjct: 395 L 395
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 62.0 bits (149), Expect = 9e-10 Identities = 30/61 (49%), Positives = 38/61 (62%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340 A+++K + S I+F DDP RKPDI KAK MLGWEP V L+EGL + FRK Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394 Query: 339 I 337 + Sbjct: 395 L 395
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 62.0 bits (149), Expect = 9e-10 Identities = 30/61 (49%), Positives = 38/61 (62%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340 A+++K + S I+F DDP RKPDI KAK MLGWEP V L+EGL + FRK Sbjct: 335 AQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 394 Query: 339 I 337 + Sbjct: 395 L 395
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 59.7 bits (143), Expect = 5e-09 Identities = 27/61 (44%), Positives = 38/61 (62%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340 A+++K + S I+F P DDP R+PDI KAK +LGWEP V L+EGL + F + Sbjct: 333 AQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSRE 392 Query: 339 I 337 + Sbjct: 393 L 393
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 58.5 bits (140), Expect = 1e-08 Identities = 28/61 (45%), Positives = 36/61 (59%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKR 340 A ++K+ + I F DDP RKPDI KAK +LGWEP V L+EGL + FRK Sbjct: 336 ARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKE 395 Query: 339 I 337 + Sbjct: 396 L 396
>TGDS_MOUSE (Q8VDR7) dTDP-D-glucose 4,6-dehydratase (EC 4.2.1.46)| Length = 355 Score = 37.0 bits (84), Expect = 0.033 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = -2 Query: 516 EVVKETIDPMSTIEFKPNTADDPH--MRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRK 343 +++KET T + +D PH MR P ++ LGW+PKV +EG+ V +RK Sbjct: 274 QLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRK 333
>GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 1) (GMD 1) Length = 361 Score = 36.6 bits (83), Expect = 0.042 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -2 Query: 474 FKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTD 352 F+P D+ K D +KAK+MLGW+PKV ++ + +MV + Sbjct: 301 FRPTEVDN---LKGDASKAKEMLGWKPKVGFEKLVKMMVDE 338
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 35.4 bits (80), Expect = 0.095 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370 AE+VKE + + + + D + D +K ++M GW+PKV LKEGL Sbjct: 264 AELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQEM-GWKPKVPLKEGL 312
>Y1055_METJA (Q58455) Hypothetical protein MJ1055| Length = 326 Score = 33.9 bits (76), Expect = 0.28 Identities = 14/49 (28%), Positives = 33/49 (67%) Frame = -2 Query: 516 EVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370 E++++ ++ + +F P D D++K++++LG++PKV+++EGL Sbjct: 261 ELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSEKLLGYKPKVTIEEGL 309
>Y4NL_RHISN (P55584) Hypothetical 38.7 kDa protein y4nL| Length = 356 Score = 33.1 bits (74), Expect = 0.47 Identities = 12/21 (57%), Positives = 20/21 (95%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGL 370 DITKA+++LG+ PK++L+EG+ Sbjct: 322 DITKARKVLGYAPKIALREGM 342
>ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 32.3 bits (72), Expect = 0.80 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331 D RKP I A++ L WEPK+ ++E + DF R +D Sbjct: 615 DVEHRKPSIRNARRCLDWEPKIDMQETID-ETLDFFLRTVD 654
>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) (AtGER2) Length = 328 Score = 32.3 bits (72), Expect = 0.80 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370 AE+VKE + + + D + D +K LGW PK+SLK+GL Sbjct: 264 AELVKEVVGFKGKLVWDTTKPDGTPRKLMDSSKLAS-LGWTPKISLKDGL 312
>ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 668 Score = 32.0 bits (71), Expect = 1.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKE 376 D RKP I AK++L WEP V + E Sbjct: 617 DVEHRKPSIDNAKRLLNWEPTVEMSE 642
>ARNA_PSE14 (Q48HZ1) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 663 Score = 32.0 bits (71), Expect = 1.0 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILDE 328 D RKP I A+Q++GW P + L E + + F + + E Sbjct: 617 DVSHRKPSIDNARQLIGWTPGIELSETIGKTLDFFLREAMAE 658
>GMDS_HUMAN (O60547) GDP-mannose 4,6 dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) (GMD) Length = 372 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -2 Query: 507 KETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMV 358 KET T++ K + + D TKAKQ L W+P+V+ E + MV Sbjct: 310 KETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMV 359
>ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331 D RKP I A + L WEPK+ ++E + DF R +D Sbjct: 615 DVEHRKPSIRNAHRCLDWEPKIDMQETID-ETLDFFLRTVD 654
>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 31.2 bits (69), Expect = 1.8 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -2 Query: 441 RKPDITKAKQMLGWEPKVSLKE 376 RKP I A++ LGWEP +++++ Sbjct: 619 RKPSIDNARRCLGWEPSIAMRD 640
>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 31.2 bits (69), Expect = 1.8 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = -2 Query: 441 RKPDITKAKQMLGWEPKVSLKE 376 RKP I A++ LGWEP +++++ Sbjct: 619 RKPSIDNARRCLGWEPSIAMRD 640
>ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331 D RKP I A + L WEPK+ ++E + DF R +D Sbjct: 615 DVEHRKPSIRNAHRCLDWEPKIDMQETID-ETLDFFLRTVD 654
>GMD2_ARATH (P93031) GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 2) (GMD 2) Length = 373 Score = 31.2 bits (69), Expect = 1.8 Identities = 14/41 (34%), Positives = 27/41 (65%) Frame = -2 Query: 474 FKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTD 352 F+P D+ + D +KAK++LGW+P+V ++ + +MV + Sbjct: 313 FRPAEVDN---LQGDASKAKEVLGWKPQVGFEKLVKMMVDE 350
>ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 30.8 bits (68), Expect = 2.3 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILD 331 D RKP I A L WEPK+ ++E + DF R +D Sbjct: 615 DVEHRKPSIRNAHHCLDWEPKIDMQETID-ETLDFFLRTVD 654
>ALR_RICPR (Q9ZE52) Alanine racemase (EC 5.1.1.1)| Length = 404 Score = 30.8 bits (68), Expect = 2.3 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 6/98 (6%) Frame = +2 Query: 236 NCTEWIQLVKHVSYIRGIQNQIDLSHCCLD------YSSKILLRKSVTIKGRPSLRDTFG 397 N E QL+ ++G+ Q +SH Y+ L R V ++ P+++ +F Sbjct: 137 NSDEIEQLINDRDLLKGLDLQYIISHLAASEETGNPYNLIQLNRFKVYLEYFPNVKASFA 196 Query: 398 SQPSICFALVISGFLIWGSSAVLGLNSIVDIGSIVSFT 511 + I L +A+ GLNS++++ S +S+T Sbjct: 197 NSGGIFLGQDYHFDLARPGAALYGLNSLIEVSSNLSYT 234
>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) (AtGER1) (AtFX) Length = 312 Score = 30.4 bits (67), Expect = 3.0 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -2 Query: 519 AEVVKETIDPMSTIEFKPNTADDPHMRKPDITKAKQMLGWEPKVSLKEGL 370 AE+VKE + + + D + D +K LGW PKVSL++GL Sbjct: 250 AELVKEVVGFEGKLGWDCTKPDGTPRKLMDSSKLAS-LGWTPKVSLRDGL 298
>EXOB_RHIME (P26503) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| Length = 328 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Frame = -2 Query: 510 VKETIDPMSTIEFKPNTADDPHMRKPDIT-------KAKQMLGWEPKVSL 382 VKE +D + + +P R+ D T KA+Q+LGWEP+ L Sbjct: 261 VKELLDAIEKVAKRPFNIGYAERREGDSTTLVANNDKARQVLGWEPQYDL 310
>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 662 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 441 RKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILDE 328 RKP I A+++L W+P + L+E + + F L E Sbjct: 620 RKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALRE 657
>GM4D_SHIFL (P0AC91) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352 D TKA + LGW+P+++L+E + MV + Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349
>GM4D_ECOLI (P0AC88) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352 D TKA + LGW+P+++L+E + MV + Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349
>GM4D_ECOL6 (P0AC89) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352 D TKA + LGW+P+++L+E + MV + Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349
>GM4D_ECO57 (P0AC90) GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose| dehydratase) Length = 373 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352 D TKA + LGW+P+++L+E + MV + Sbjct: 323 DPTKAHEKLGWKPEITLREMVSEMVAN 349
>ARNA_PHOLL (Q7N3Q7) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 29.6 bits (65), Expect = 5.2 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDFRKRILDE 328 D RKP I A+++L W+P + +K+ + + F + ++E Sbjct: 615 DVEHRKPSIKNAERLLDWKPTIDMKQTINETLDFFLRGAVEE 656
>GALE_LACHE (Q7WTB1) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 330 Score = 29.6 bits (65), Expect = 5.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 468 PNTADDPHMRKPDITKAKQMLGWEPK 391 P DP D TKA+ +LGW+PK Sbjct: 280 PRRGGDPDSLVADSTKARTVLGWKPK 305
>NU4M_LOCMI (Q36424) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 444 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 15/46 (32%) Frame = +1 Query: 388 YLWLPT*H--------------LLRLGNIGLSHM-GIISCVGLEFN 480 +LWLP H LL+LG G+ M +ISC+GL FN Sbjct: 201 HLWLPKAHVEAPISGSMILAGILLKLGGYGIFRMMKVISCLGLSFN 246
>DEPD5_HUMAN (O75140) DEP domain-containing protein 5| Length = 1572 Score = 29.6 bits (65), Expect = 5.2 Identities = 19/74 (25%), Positives = 31/74 (41%) Frame = +2 Query: 41 FILQLGVNWKSKTEPNSSRNIAPSPILHSTSIVSHVDKKQFATSVQSHQDGNKFK*FYKD 220 F+ L WK K + + S + V + A+ Q H+ G ++ FYK Sbjct: 199 FLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSVDEFPEINRASIRQDHK-GRFYEDFYKV 257 Query: 221 VIQTQNCTEWIQLV 262 V+Q + EW L+ Sbjct: 258 VVQNERREEWTSLL 271
>GALE_METJA (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2)| (Galactowaldenase) (UDP-galactose 4-epimerase) Length = 305 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGLPLMV 358 DI KA+ LGW+P++ LKEG+ +V Sbjct: 273 DIKKAES-LGWKPEIDLKEGIKRVV 296
>DEPD5_MOUSE (P61460) DEP domain-containing protein 5| Length = 1527 Score = 29.3 bits (64), Expect = 6.8 Identities = 18/74 (24%), Positives = 30/74 (40%) Frame = +2 Query: 41 FILQLGVNWKSKTEPNSSRNIAPSPILHSTSIVSHVDKKQFATSVQSHQDGNKFK*FYKD 220 F+ L WK K + + S + + + A S+Q G ++ FYK Sbjct: 157 FLADLFTKWKEKNCSHEVTVVLFSRTFYDAKSIDEFPEINRA-SIQEDHKGRFYEDFYKV 215 Query: 221 VIQTQNCTEWIQLV 262 V+Q + EW L+ Sbjct: 216 VVQNERREEWTSLL 229
>TRUA_HELHP (Q7U328) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 248 Score = 29.3 bits (64), Expect = 6.8 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 149 DKKQFATSVQSHQDGNKFK*FYKDVIQTQNCTEWIQLVKHVSY 277 D+ F ++Q+ Q + F F K+ T+NC I +KH +Y Sbjct: 140 DETLFKNALQAFQGQHNFVFFKKNGSYTKNCIRTIFAIKHYTY 182
>ARNA_WIGBR (Q8D341) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 654 Score = 28.9 bits (63), Expect = 8.9 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -2 Query: 453 DPHMRKPDITKAKQMLGWEPKVSLKEGLPLMVTDF 349 D RKP+I AK++L W PK ++ L ++ F Sbjct: 614 DIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINFF 648
>VIPB_SALTI (Q04973) Vi polysaccharide biosynthesis protein vipB/tviC| Length = 348 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGL 370 DITK K L +EP+ +KEGL Sbjct: 310 DITKIKTFLSYEPEFDIKEGL 330
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 441 RKPDITKAKQMLGWEPKVSLKEGL 370 R D T K+ LGW P + LK+GL Sbjct: 307 RNSDNTLIKEKLGWAPTMKLKDGL 330
>GM4D2_VIBCH (Q56598) Probable GDP-mannose 4,6-dehydratase (EC 4.2.1.47)| (GDP-D-mannose dehydratase) Length = 372 Score = 28.9 bits (63), Expect = 8.9 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 432 DITKAKQMLGWEPKVSLKEGLPLMVTD 352 D +KAKQ LGW P+++++E MV + Sbjct: 323 DPSKAKQKLGWTPEITVQEMCAEMVME 349
>ERG26_YEAST (P53199) Sterol-4-alpha-carboxylate 3-dehydrogenase,| decarboxylating (EC 1.1.1.170) Length = 349 Score = 28.9 bits (63), Expect = 8.9 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = -2 Query: 441 RKPDITKAKQMLGWEPKVSLKEGL 370 R +I KAK++LG+ P+V ++EG+ Sbjct: 315 RYHNIAKAKKLLGYTPRVGIEEGI 338 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,983,965 Number of Sequences: 219361 Number of extensions: 1518627 Number of successful extensions: 3354 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 3287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3353 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
