ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY677176.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 827 0.0
2dbj|AB079063.2| Oryza sativa (japonica cultivar-group) UXS-4 mRN... 214 2e-52
3dbj|AK104675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
4dbj|AK069181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
6dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 212 9e-52
7ref|NM_190499.1| Oryza sativa (japonica cultivar-group), predic... 206 5e-50
8gb|AY105825.1| Zea mays PCO074580 mRNA sequence 90 8e-15
9gb|AY922313.1| Populus tomentosa UDP-glucuronic acid decarboxyla... 52 0.002
10emb|CR683678.1|CNS0FQH6 Tetraodon nigroviridis full-length cDNA 42 1.8
11emb|CR388058.6| Zebrafish DNA sequence from clone DKEY-184L17 in... 42 1.8
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
13dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
14dbj|AP005000.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
15ref|NM_103267.1| Arabidopsis thaliana cysteine-type peptidase AT... 40 7.0
16gb|AC146455.3| Pan troglodytes BAC clone CH251-460B7 from Y, com... 40 7.0
17gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 7.0
18emb|AJ297276.1|PNI297276 Populus nigra microsatellite DNA, clone... 40 7.0
19emb|CR318599.18| Zebrafish DNA sequence from clone DKEY-28D5 in ... 40 7.0
20emb|CR293522.9| Zebrafish DNA sequence from clone DKEY-29I3 in l... 40 7.0
21emb|AL353725.14| Human DNA sequence from clone RP11-218C11 on ch... 40 7.0
22emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chr... 40 7.0
23gb|AC023235.24| Homo sapiens 3 BAC RP11-484D18 (Roswell Park Can... 40 7.0
24emb|AL049824.4|HSJ117L23 Human DNA sequence from clone RP1-117L2... 40 7.0
25emb|AL031776.7|HS312L17 Human DNA sequence from clone RP1-312L17... 40 7.0
26gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.0
27gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, comp... 40 7.0
28gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chrom... 40 7.0
29gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 7.0
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
31emb|BX322625.9| Mouse DNA sequence from clone RP24-158I12 on chr... 40 7.0
32gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana... 40 7.0
33dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 40 7.0
34gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08,... 40 7.0
35gb|U48435.1|SCU48435 Solanum chacoense putative cytochrome P450 ... 40 7.0
36emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chr... 40 7.0 
>gb|AY677176.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS4) mRNA, complete
            cds
          Length = 1455

 Score =  827 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                        
Query: 104  gccccttcacctatccttcactcaacttctatagtttcacatgtggacaaaaaacagttt 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1455 gccccttcacctatccttcactcaacttctatagtttcacatgtggacaaaaaacagttt 1396

                                                                        
Query: 164  gctacttctgtccaatctcaccaagacggaaacaaatttaaatgattctacaaggacgtt 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 gctacttctgtccaatctcaccaagacggaaacaaatttaaatgattctacaaggacgtt 1336

                                                                        
Query: 224  atacaaacacagaattgtactgaatggatccagttggtgaagcacgtttcctatattcgc 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 atacaaacacagaattgtactgaatggatccagttggtgaagcacgtttcctatattcgc 1276

                                                                        
Query: 284  ggcattcagaaccaaatagatttatctcactgttgccttgattactcatccaagatcctt 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 ggcattcagaaccaaatagatttatctcactgttgccttgattactcatccaagatcctt 1216

                                                                        
Query: 344  ttgcggaaatctgtcaccatcaagggaaggccttccttaagagatacctttggctcccaa 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 ttgcggaaatctgtcaccatcaagggaaggccttccttaagagatacctttggctcccaa 1156

                                                                        
Query: 404  cctagcatttgcttcgccttggtaatatcgggctttctcatatggggatcatcagctgtg 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 cctagcatttgcttcgccttggtaatatcgggctttctcatatggggatcatcagctgtg 1096

                                                                     
Query: 464  ttgggcttgaattcaattgttgacattgggtcgattgtttccttcacaacctctgca 520
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ttgggcttgaattcaattgttgacattgggtcgattgtttccttcacaacctctgca 1039
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>dbj|AB079063.2| Oryza sativa (japonica cultivar-group) UXS-4 mRNA for UDP-glucuronic
            acid decarboxylase, complete cds
          Length = 1404

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Minus

                                                                        
Query: 321  ttgattactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggccttcct 380
            |||||||||||||||| || ||||  ||||| ||  ||||||| |||||||| |||||| 
Sbjct: 1237 ttgattactcatccaaaattctttgacggaagtccttcaccattaagggaagaccttccc 1178

                                                                        
Query: 381  taagagatacctttggctcccaacctagcatttgcttcgccttggtaatatcgggctttc 440
            | ||||| |||||||||||||||| |||||  ||||| |||||||||||||| |||||||
Sbjct: 1177 tgagagagacctttggctcccaacgtagcaggtgcttggccttggtaatatctggctttc 1118

                                                                        
Query: 441  tcatatggggatcatcagctgtgttgggcttgaattcaattgttgacattgggtcgattg 500
            |||| || |||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 1117 tcatgtgaggatcatcagctgtgttgggtttgaattcaattgttgccattgggtcaattg 1058

                                
Query: 501  tttccttcacaacctctgca 520
            ||||||||||||||| ||||
Sbjct: 1057 tttccttcacaacctgtgca 1038
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>dbj|AK104675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-H12, full
           insert sequence
          Length = 805

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Minus

                                                                       
Query: 321 ttgattactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggccttcct 380
           |||||||||||||||| || ||||  ||||| ||  ||||||| |||||||| |||||| 
Sbjct: 478 ttgattactcatccaaaattctttgacggaagtccttcaccattaagggaagaccttccc 419

                                                                       
Query: 381 taagagatacctttggctcccaacctagcatttgcttcgccttggtaatatcgggctttc 440
           | ||||| |||||||||||||||| |||||  ||||| |||||||||||||| |||||||
Sbjct: 418 tgagagagacctttggctcccaacgtagcaggtgcttggccttggtaatatctggctttc 359

                                                                       
Query: 441 tcatatggggatcatcagctgtgttgggcttgaattcaattgttgacattgggtcgattg 500
           |||| || |||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 358 tcatgtgaggatcatcagctgtgttgggtttgaattcaattgttgccattgggtcaattg 299

                               
Query: 501 tttccttcacaacctctgca 520
           ||||||||||||||| ||||
Sbjct: 298 tttccttcacaacctgtgca 279
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>dbj|AK069181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F13, full
            insert sequence
          Length = 2387

 Score =  214 bits (108), Expect = 2e-52
 Identities = 177/200 (88%)
 Strand = Plus / Minus

                                                                        
Query: 321  ttgattactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggccttcct 380
            |||||||||||||||| || ||||  ||||| ||  ||||||| |||||||| |||||| 
Sbjct: 2055 ttgattactcatccaaaattctttgacggaagtccttcaccattaagggaagaccttccc 1996

                                                                        
Query: 381  taagagatacctttggctcccaacctagcatttgcttcgccttggtaatatcgggctttc 440
            | ||||| |||||||||||||||| |||||  ||||| |||||||||||||| |||||||
Sbjct: 1995 tgagagagacctttggctcccaacgtagcaggtgcttggccttggtaatatctggctttc 1936

                                                                        
Query: 441  tcatatggggatcatcagctgtgttgggcttgaattcaattgttgacattgggtcgattg 500
            |||| || |||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 1935 tcatgtgaggatcatcagctgtgttgggtttgaattcaattgttgccattgggtcaattg 1876

                                
Query: 501  tttccttcacaacctctgca 520
            ||||||||||||||| ||||
Sbjct: 1875 tttccttcacaacctgtgca 1856
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  212 bits (107), Expect = 9e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                            
Query: 321      ttgattactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggccttcct 380
                |||||||||||||||| || ||||  ||||| ||  ||||||| |||||||| |||||| 
Sbjct: 35893507 ttgattactcatccaaaattctttgacggaagtccttcaccattaagggaagaccttccc 35893448

                                                                            
Query: 381      taagagatacctttggctcccaacctagcatttgcttcgccttggtaatatcgggctttc 440
                | ||||| |||||||||||||||| |||||  ||||| |||||||||||||| |||||||
Sbjct: 35893447 tgagagagacctttggctcccaacgtagcaggtgcttggccttggtaatatctggctttc 35893388

                                                                            
Query: 441      tcatatggggatcatcagctgtgttgggcttgaattcaattgttgacattgggtcgattg 500
                |||| || |||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 35893387 tcatgtgaggatcatcagctgtgttgggtttgaattcaattgttgccattgggtcaattg 35893328

                               
Query: 501      tttccttcacaacct 515
                |||||||||||||||
Sbjct: 35893327 tttccttcacaacct 35893313
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score =  212 bits (107), Expect = 9e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                          
Query: 321    ttgattactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggccttcct 380
              |||||||||||||||| || ||||  ||||| ||  ||||||| |||||||| |||||| 
Sbjct: 157965 ttgattactcatccaaaattctttgacggaagtccttcaccattaagggaagaccttccc 157906

                                                                          
Query: 381    taagagatacctttggctcccaacctagcatttgcttcgccttggtaatatcgggctttc 440
              | ||||| |||||||||||||||| |||||  ||||| |||||||||||||| |||||||
Sbjct: 157905 tgagagagacctttggctcccaacgtagcaggtgcttggccttggtaatatctggctttc 157846

                                                                          
Query: 441    tcatatggggatcatcagctgtgttgggcttgaattcaattgttgacattgggtcgattg 500
              |||| || |||||||||||||||||||| |||||||||||||||| ||||||||| ||||
Sbjct: 157845 tcatgtgaggatcatcagctgtgttgggtttgaattcaattgttgccattgggtcaattg 157786

                             
Query: 501    tttccttcacaacct 515
              |||||||||||||||
Sbjct: 157785 tttccttcacaacct 157771
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>ref|NM_190499.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1173

 Score =  206 bits (104), Expect = 5e-50
 Identities = 173/196 (88%)
 Strand = Plus / Minus

                                                                        
Query: 325  ttactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggccttccttaag 384
            |||||||||||| || ||||  ||||| ||  ||||||| |||||||| |||||| | ||
Sbjct: 1173 ttactcatccaaaattctttgacggaagtccttcaccattaagggaagaccttccctgag 1114

                                                                        
Query: 385  agatacctttggctcccaacctagcatttgcttcgccttggtaatatcgggctttctcat 444
            ||| |||||||||||||||| |||||  ||||| |||||||||||||| |||||||||||
Sbjct: 1113 agagacctttggctcccaacgtagcaggtgcttggccttggtaatatctggctttctcat 1054

                                                                        
Query: 445  atggggatcatcagctgtgttgggcttgaattcaattgttgacattgggtcgattgtttc 504
             || |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||
Sbjct: 1053 gtgaggatcatcagctgtgttgggtttgaattcaattgttgccattgggtcaattgtttc 994

                            
Query: 505  cttcacaacctctgca 520
            ||||||||||| ||||
Sbjct: 993  cttcacaacctgtgca 978
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>gb|AY105825.1| Zea mays PCO074580 mRNA sequence
          Length = 583

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                       
Query: 316 ttgccttgattactcatccaagatccttttgcggaaatctgtcaccatcaagggaaggcc 375
           |||| |||||||||||||| |||||||||  |||||||||   ||||| |  ||||||||
Sbjct: 123 ttgctttgattactcatccgagatcctttgacggaaatcttgaaccattagcggaaggcc 64

                                                                    
Query: 376 ttccttaagagatacctttggctcccaacctagcatttgcttcgccttggtaatatc 432
           ||| || ||||| |||||||||||||||  ||||| |||||| |||||||| |||||
Sbjct: 63  ttctttgagagagacctttggctcccaatgtagcagttgcttagccttggtgatatc 7
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>gb|AY922313.1| Populus tomentosa UDP-glucuronic acid decarboxylase 1 (UXS1) mRNA,
            complete cds
          Length = 1482

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 444  tatggggatcatcagctgtgttgggcttgaattcaattgttg 485
            |||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 1300 tatgtggatcatcagcagtgttgggtttgaattctattgttg 1259
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>emb|CR683678.1|CNS0FQH6 Tetraodon nigroviridis full-length cDNA
          Length = 1177

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 308  tctcactgttgccttgattac 328
            |||||||||||||||||||||
Sbjct: 1136 tctcactgttgccttgattac 1116
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>emb|CR388058.6| Zebrafish DNA sequence from clone DKEY-184L17 in linkage group 8,
              complete sequence
          Length = 141160

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 419    gccttggtaatatcgggcttt 439
              |||||||||||||||||||||
Sbjct: 134013 gccttggtaatatcgggcttt 134033
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 19       tacatttcacttgtatcaagtattcattttacagttaggag 59
                ||||||||||||| ||||| ||||| | ||||| |||||||
Sbjct: 25122213 tacatttcacttgaatcaaatattcgtattacaattaggag 25122253
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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1469H02
          Length = 136602

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 19    tacatttcacttgtatcaagtattcattttacagttaggag 59
             ||||||||||||| ||||| ||||| | ||||| |||||||
Sbjct: 22606 tacatttcacttgaatcaaatattcgtattacaattaggag 22646
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>dbj|AP005000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0042D01
          Length = 148305

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 19     tacatttcacttgtatcaagtattcattttacagttaggag 59
              ||||||||||||| ||||| ||||| | ||||| |||||||
Sbjct: 135201 tacatttcacttgaatcaaatattcgtattacaattaggag 135241
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>ref|NM_103267.1| Arabidopsis thaliana cysteine-type peptidase AT1G35650 mRNA,
           complete cds
          Length = 2211

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 cttttgcggaaatctgtcac 360
           ||||||||||||||||||||
Sbjct: 655 cttttgcggaaatctgtcac 674
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>gb|AC146455.3| Pan troglodytes BAC clone CH251-460B7 from Y, complete sequence
          Length = 211439

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 391   ctttggctcccaacctagcatttgcttc 418
             |||||| |||||||||||||| ||||||
Sbjct: 81571 ctttggttcccaacctagcatgtgcttc 81544
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tccttcactcaacttctata 136
              ||||||||||||||||||||
Sbjct: 113650 tccttcactcaacttctata 113669
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>emb|AJ297276.1|PNI297276 Populus nigra microsatellite DNA, clone WPMS07
          Length = 659

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 426 taatatcgggctttctcatatggggatcatcagctgtgttgggcttgaattcaattgttg 485
           ||||||| || || ||| |||| ||||||||||| ||||| ||  ||||||| |||||||
Sbjct: 447 taatatctggtttcctcttatgtggatcatcagcagtgtttggtctgaattctattgttg 388
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>emb|CR318599.18| Zebrafish DNA sequence from clone DKEY-28D5 in linkage group 22, complete
              sequence
          Length = 222575

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    atgtggacaaaaaacagttt 163
              ||||||||||||||||||||
Sbjct: 159608 atgtggacaaaaaacagttt 159627
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>emb|CR293522.9| Zebrafish DNA sequence from clone DKEY-29I3 in linkage group 7,
             complete sequence
          Length = 196250

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   ttcaattgttgacattgggt 494
             ||||||||||||||||||||
Sbjct: 91825 ttcaattgttgacattgggt 91844
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>emb|AL353725.14| Human DNA sequence from clone RP11-218C11 on chromosome 10, complete
             sequence
          Length = 61524

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 86    aatagctccagaaatatagcccct 109
             ||||||||||||||| ||||||||
Sbjct: 39480 aatagctccagaaatttagcccct 39503
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>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a novel
              gene,  the FOXP4 gene for forkhead box P4 and five CpG
              islands, complete sequence
          Length = 180547

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tgaacccaatagctccagaa 98
              ||||||||||||||||||||
Sbjct: 151558 tgaacccaatagctccagaa 151577
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>gb|AC023235.24| Homo sapiens 3 BAC RP11-484D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169633

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ttgtatcaagtattcatttt 48
             ||||||||||||||||||||
Sbjct: 66948 ttgtatcaagtattcatttt 66967
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>emb|AL049824.4|HSJ117L23 Human DNA sequence from clone RP1-117L23 on chromosome 1p33-34.2
            Contains part of the PPIE gene for peptidylprolyl
            isomerase E (cyclophilin E) and the 3' end of the BMP8B
            gene for bone morphogenetic protein 8b (osteogenic
            protein 2), complete sequence
          Length = 19783

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  aaacacagaattgtactgaa 247
            ||||||||||||||||||||
Sbjct: 9649 aaacacagaattgtactgaa 9668
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>emb|AL031776.7|HS312L17 Human DNA sequence from clone RP1-312L17 on chromosome 6q22.2-23.1
             Contains the 5' end of the FLJ14440 gene for
             thrombospondin and a CpG island, complete sequence
          Length = 108208

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    tcaagtattcattttacagttagg 57
             ||||||||||||||||||| ||||
Sbjct: 48876 tcaagtattcattttacagatagg 48899
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 391     ctttggctcccaacctagcatttgcttc 418
               |||||| |||||||||||||| ||||||
Sbjct: 7573743 ctttggttcccaacctagcatgtgcttc 7573716
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>gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, complete sequence
          Length = 172930

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      caaatctcatcccattacatttca 27
              |||||||||| |||||||||||||
Sbjct: 117203 caaatctcatgccattacatttca 117180
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>gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chromosome y, complete
              sequence
          Length = 168988

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 391    ctttggctcccaacctagcatttgcttc 418
              |||||| |||||||||||||| ||||||
Sbjct: 152890 ctttggttcccaacctagcatgtgcttc 152863
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    aagagatacctttggctcccaacc 405
              ||||||||||||||||| ||||||
Sbjct: 942339 aagagatacctttggcttccaacc 942362
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     ttgtatcaagtattcattttacag 52
              ||||||||| ||||||||||||||
Sbjct: 680320 ttgtatcaaatattcattttacag 680297
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>emb|BX322625.9| Mouse DNA sequence from clone RP24-158I12 on chromosome 2, complete
             sequence
          Length = 98004

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tatacaaacacagaattgta 242
             ||||||||||||||||||||
Sbjct: 14716 tatacaaacacagaattgta 14697
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>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I,
             complete sequence
          Length = 158096

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   cttttgcggaaatctgtcac 360
             ||||||||||||||||||||
Sbjct: 28389 cttttgcggaaatctgtcac 28408
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>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
             clone:P0029D06
          Length = 150120

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 29    ttgtatcaagtattcattttacag 52
             ||||||||| ||||||||||||||
Sbjct: 86748 ttgtatcaaatattcattttacag 86725
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>gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08, complete sequence
          Length = 218698

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   ttatacaaacacagaattgtactg 245
             ||||||||||||||| ||||||||
Sbjct: 38696 ttatacaaacacagatttgtactg 38673
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>gb|U48435.1|SCU48435 Solanum chacoense putative cytochrome P450 gene, complete cds
          Length = 3107

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  tatcaagtattcattttaca 51
           ||||||||||||||||||||
Sbjct: 326 tatcaagtattcattttaca 307
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>emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chromosome 2, complete
              sequence
          Length = 201400

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    tctgtccaatctcaccaaga 189
              ||||||||||||||||||||
Sbjct: 113106 tctgtccaatctcaccaaga 113125


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,106,118
Number of Sequences: 3902068
Number of extensions: 5106118
Number of successful extensions: 90782
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90586
Number of HSP's gapped (non-prelim): 195
length of query: 520
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 497
effective length of database: 17,143,297,704
effective search space: 8520218958888
effective search space used: 8520218958888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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