>RPOB_THEMA (P29398) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1263

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 536  NLSLPPPGVPESVATLVKMVNGATANIVGWDD 441
            N+++P PGVPES   L+K + G   ++  +D+
Sbjct: 1222 NMNIPEPGVPESFRVLIKELRGLALDVRLYDE 1253

>RPOB_MYCGA (P47715) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1390

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 533  LSLPPPGVPESVATLVKMVN--GATANIVGWDDEI 435
            LS+P PGVPES   L K +   G T N++  DD I
Sbjct: 1321 LSIPEPGVPESFKLLTKELQGLGMTLNVLYDDDSI 1355

>PAR6B_MOUSE (Q9JK83) Partitioning defective 6 homolog beta (PAR-6 beta)|
           (PAR-6B)
          Length = 371

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 527 LPPPGVPESVATL-----VKMVNGATANIVGWDDEI*MMILPERSLIHLMLE*NQRISVV 363
           L P G+ +S   L     V  VNG   +    D    MMI   R+LI  +   NQR +VV
Sbjct: 197 LVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRNNVV 256

Query: 362 NNTRAFNSCS 333
            N+R   S S
Sbjct: 257 RNSRTSGSSS 266

>VL2_HPV21 (P50795) Minor capsid protein L2|
          Length = 520

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 380 GSTPASDELSSFPAKSSFIFHRPTP 454
           GSTP   EL  FP++ SF    PTP
Sbjct: 219 GSTPELIELQDFPSRYSFEIEEPTP 243

>PAR6B_HUMAN (Q9BYG5) Partitioning defective 6 homolog beta (PAR-6 beta)|
           (PAR-6B)
          Length = 372

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 527 LPPPGVPESVATL-----VKMVNGATANIVGWDDEI*MMILPERSLIHLMLE*NQRISVV 363
           L P G+ +S   L     V  VNG   +    D    MMI   R+LI  +   NQR +VV
Sbjct: 197 LVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRNNVV 256

Query: 362 NNTRAFNS 339
            N+R   S
Sbjct: 257 RNSRTSGS 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,685,103
Number of Sequences: 219361
Number of extensions: 1467815
Number of successful extensions: 3265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3265
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)