>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 216 HQSSPSASRRNGHDPPPRCPVQPTXXXXXXPTRCRRGAIAKNR 344
           H++ PSASR     P PR P  P         R  R A+A +R
Sbjct: 267 HETRPSASRSRRRSPSPRRPATPPKPAAVGTRRSTRQALAHSR 309

>FA53C_MOUSE (Q8BXQ8) Protein FAM53C|
          Length = 393

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = +2

Query: 101 PPIQLIGNP*NVHPKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPS---L 271
           PP+  + +P    P+++ +PP       P +     L  P+   R  P W RP+PS    
Sbjct: 90  PPLSQVLSPEPPDPEKLPVPPAP-----PSKRHCRSLSVPVDLSRWQPVW-RPAPSKLWT 143

Query: 272 PCTADGSGSGSTNAVPARCHCQEPPNQQKNYCIYSVR-LRAPS 397
           P    G+  G    VP     Q PP +     + S+R L+APS
Sbjct: 144 PIKHRGNAGGGGPQVPQ----QSPPKR-----VSSLRFLQAPS 177

>FTSH_MYCLE (Q9CD58) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 787

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 158 PPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLP 274
           PP   +   P +    + YPP      +P WP+P+PS P
Sbjct: 703 PPGWHAPGWPPQQPPDYWYPPEQQPSQSPYWPQPAPSYP 741

>MOSA_MAIZE (P15268) Autonomous transposable element EN-1 mosaic protein|
           (Suppressor-mutator system protein) (SPM)
          Length = 621

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 215 PPIFSLRLAPQWPRPSPSLPCTADGSGSGSTNAVPARCHCQEPPNQ 352
           PP       P+    SP LP  + GSGSGS +A P       PP+Q
Sbjct: 562 PPPMPWGFPPRGQSQSPGLPSHSPGSGSGSHHASP-------PPDQ 600

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +2

Query: 140  PKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLPCTADGSGSGS--TNA 313
            P  I +P  D   F P    SS ++PP     +    P P P+   T D SGS    T+ 
Sbjct: 958  PSSIPVPSPD---FPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSK 1014

Query: 314  VPARCHCQEPPNQQKNYCIYS 376
              +    + PP  Q+N  I S
Sbjct: 1015 TSSPGGKKPPPTPQRNSSIKS 1035

>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
 Frame = +2

Query: 77  LVSTNCTLPPIQLIGNP*NVH------PKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRL 238
           L+ T   L  ++ +G P N+       P + ++P   +   LPK    + L P     R 
Sbjct: 339 LLQTGPRLGHLECLGQPANLRTSERSPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRS 398

Query: 239 APQWPRPSPSLPCTADGSGSG 301
            P  P P  +LP  A  S  G
Sbjct: 399 YPFLPNPPAALPSIAYTSSRG 419

>SCR11_ARATH (P82630) Hypothetical protein SCRL11 precursor|
          Length = 86

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 SPSLPCTADGSGSGSTNAVPARCHCQEPPNQQK 358
           SPS  C  D  GS S +A+P  C C   P+ ++
Sbjct: 43  SPSYTCFLDLLGSKSASAMPKNCKCTPLPHNRR 75

>APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2843

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 210  SIHQSSPSASRRNGHDPPPRCPVQPTXXXXXXPTRCRRGAIAKNRPTNKRI 362
            S   S+P+ ++ +G    P  PV+P        TR R+ A +KN    +R+
Sbjct: 1754 SASSSAPNKNQLDGKKKKPTSPVKPIPQNTEYRTRVRKNADSKNNLNAERV 1804

>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
 Frame = +2

Query: 77  LVSTNCTLPPIQLIGNP*NVH------PKRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRL 238
           L+ T   L  ++ +G P N+       P + ++P   +   LPK    + L P     R 
Sbjct: 339 LLQTGPRLGHLERLGQPANLRTSERSPPTKRRLPRSSEPNRLPKPLPEATLAPSYRHRRP 398

Query: 239 APQWPRPSPSLPCTADGSGSG 301
            P  P P  +LP  A  S  G
Sbjct: 399 YPLLPNPPAALPSIAYTSSRG 419

>HXD4_HUMAN (P09016) Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13)|
          Length = 255

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 287 GSGSGSTNAVPARCHCQEPPNQQKNYCIYSVRLRAPSTKP 406
           GSG G  +A+PAR H QEP     +Y        AP   P
Sbjct: 64  GSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPP 103

>RREB1_HUMAN (Q92766) RAS-responsive element-binding protein 1 (RREB-1)|
           (Raf-responsive zinc finger protein LZ321)
          Length = 755

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +2

Query: 251 PRPSPSLPCTADGSGSGSTNAVPARCHCQEPPNQ 352
           P P PSLP T   SG   +   PA     EPP Q
Sbjct: 42  PAPGPSLPVTLGPSGILESPMAPAPAATPEPPAQ 75

>CATA_RHOCA (P37743) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 576

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -3

Query: 382 PY*VDTVILLLVGRFLAMAPRRHRVGXXXXXAVGCTGQRGGGSWPLRREAEGEDWWIEKR 203
           P   D  +  L GR    A RR R       A G   +R G +W + R + G DW + K 
Sbjct: 283 PEAADVTVRALAGRTRIWAARRRRPSPRGSRAPGPRIRRAG-TWAISRCSSGHDWELTKS 341

Query: 202 RA 197
            A
Sbjct: 342 PA 343

>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1)
          Length = 1050

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 257 PSPSLPCTADGSGSGSTNAV-PARCHCQEP---PNQQKNYCIYSVRLRAPS 397
           PSPS PC++  S SG       +RC    P   P Q +NY      L++P+
Sbjct: 402 PSPSPPCSSSPSPSGRAGPFSSSRCGASVPIPVPTQVQNYQRIERNLQSPT 452

>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 171 NLNFYQKERALLFSIHQSSPSASRRNGHDPPPRCPVQPT 287
           N+ F + E    +++H+    ASR   HDPPPR P  PT
Sbjct: 702 NIRFSRHET---YTVHKRYYCASR---HDPPPRRPPAPT 734

>CLAP1_HUMAN (Q7Z460) CLIP-associating protein 1 (Cytoplasmic linker-associated|
           protein 1) (Multiple asters homolog 1)
          Length = 1538

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +2

Query: 143 KRIKIPPHDQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLPCTADGSGSGSTNAVPA 322
           KR KIP   +S+   + TS     P    L  + + PRPS S  C+ D S   S +  PA
Sbjct: 716 KRSKIP---RSQGCSRETS-----PNRIGLARSSRIPRPSMSQGCSRDTSRESSRDTSPA 767

Query: 323 R 325
           R
Sbjct: 768 R 768

>SCR10_ARATH (P82629) Protein SCRL10 precursor|
          Length = 107

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 254 RPSPSLPCTADGSGSGSTNAVPARCHCQEPPNQQKNYCIYSV 379
           R +P   C  D  G+ S + +P  C C   PN  K  C  SV
Sbjct: 58  RGTPRTTCFLDFLGARSASEMPKNCDCTPQPN-NKRLCECSV 98

>PROL_ARATH (P43299) PROLIFERA protein|
          Length = 716

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +2

Query: 167 DQSEFLPKRTSSSFLYPPIFSLRLAPQWPRPSPSLP------CTADGSGSGSTNAVPARC 328
           +  EFL + T ++  Y  IFS  +    P P+ + P           +  G+ N   +  
Sbjct: 57  ESEEFLGRLTENTRRYVSIFSAAVDELLPEPTEAFPDDDHDILMTQRADDGTDNPDVSDP 116

Query: 329 HCQEPPNQQKNYCIYSVRLRAPS 397
           H Q+ P++ K Y  Y V  +APS
Sbjct: 117 H-QQIPSEIKRY--YEVYFKAPS 136

>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +2

Query: 101 PPIQLIGNP*NVHPKRIKIPPHD-QSEFLPKRTSSSFLYP----PIFSLRLAPQWPRPSP 265
           PP+    +P     + ++IPP   ++  LP  + +S L P    P  S  LAP    P P
Sbjct: 785 PPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSA-LAPPHGSPDP 843

Query: 266 SLPCTADGSGSG 301
            +P    G GSG
Sbjct: 844 PVPELLTGRGSG 855

>ADA2C_CAVPO (Q60476) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor)
          Length = 455

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 222 SSPSASRRNGHDPPPRCPVQPTXXXXXXPTRCRRGAIAK 338
           ++ +A+  NGH  PPR  V+P         R RRGA+ +
Sbjct: 263 AAAAAAGENGHCAPPRADVEPDESSAAERRR-RRGALRR 300

>RPN2_SCHPO (O74762) 26S proteasome regulatory subunit rpn2|
          Length = 965

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = +3

Query: 21  LLRMKESSSITEQNPALFY*YQRIVHCHQSS*LVTPKMSTQKESRSHHMTNLNFYQKERA 200
           LLR+  SS +TE  P  F   + +VH + +S  V  K+  +  S++   + L  YQ    
Sbjct: 204 LLRLLLSSFLTETEPDYFSVGKCVVHLNDAS--VAAKLLMKLSSQNDDKSLLTAYQ---- 257

Query: 201 LLFSIHQSSP 230
           L F +  S+P
Sbjct: 258 LAFDLEDSAP 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,627,813
Number of Sequences: 219361
Number of extensions: 1254548
Number of successful extensions: 3907
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)