ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38h11 |
|---|---|
| Clone Library Name | barley_pub |
>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic| protein 2a) (PIP2a) (OsPIP2.1) Length = 290 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/20 (100%), Positives = 20/20 (100%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSNA 327 HQYILRAGAIKALGSFRSNA Sbjct: 271 HQYILRAGAIKALGSFRSNA 290
>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)| (Salt stress-induced major intrinsic protein) Length = 280 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/20 (95%), Positives = 19/20 (95%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSNA 327 HQYILRA AIKALGSFRSNA Sbjct: 259 HQYILRASAIKALGSFRSNA 278
>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2.6) (OsPIP2.6) Length = 282 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/19 (94%), Positives = 18/19 (94%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSN 330 HQYILRA AIKALGSFRSN Sbjct: 261 HQYILRAAAIKALGSFRSN 279
>PIP1_ATRCA (P42767) Aquaporin PIP-type| Length = 282 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSN 330 HQY+LRA AIKALGSFRSN Sbjct: 261 HQYVLRAAAIKALGSFRSN 279
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 37.0 bits (84), Expect = 0.011 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRS 333 HQ++LRAGAIKALGSFRS Sbjct: 265 HQFVLRAGAIKALGSFRS 282
>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic| protein 3b) (PIP3b) Length = 278 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/19 (89%), Positives = 17/19 (89%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSN 330 HQYILRA AIKAL SFRSN Sbjct: 257 HQYILRAAAIKALASFRSN 275
>Q300_MOUSE (Q02722) Protein Q300| Length = 77 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -3 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICMMDP 54 Y+CV C+CVC C + +S G+L S + C + + +P Sbjct: 26 YVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHCGVFVCVLIFEP 73
>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic| protein 2.4) Length = 291 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRS 333 HQ+ILRA AIKALGSF S Sbjct: 266 HQFILRAAAIKALGSFGS 283
>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2e) (PIP2e) Length = 289 Score = 31.2 bits (69), Expect = 0.63 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRS 333 HQ++LRAGA+KA GS RS Sbjct: 265 HQFVLRAGAMKAYGSVRS 282
>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic| protein 2.2) (OsPIP2.2) Length = 288 Score = 30.8 bits (68), Expect = 0.82 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSNA 327 HQY+LRA A K LGS+RSNA Sbjct: 270 HQYVLRASAAK-LGSYRSNA 288
>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)| (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced tonoplast intrinsic protein) (WSI-TIP) Length = 285 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSNA 327 HQ++LRA K+LGSFRS A Sbjct: 264 HQFVLRASGSKSLGSFRSAA 283
>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)| (PIP2b) (TMP2b) Length = 285 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSNA 327 HQ++LRA K+LGSFRS A Sbjct: 264 HQFVLRASGSKSLGSFRSAA 283
>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)| (PIP2a) Length = 287 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -3 Query: 386 HQYILRAGAIKALGSFRSNA 327 HQ++LRA K+LGSFRS A Sbjct: 266 HQFVLRASGSKSLGSFRSAA 285
>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 580 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353
>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 576 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 309 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 349
>NU5M_ANOAR (P51899) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) (Fragment) Length = 384 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGSL + P + SCFN+A + + Sbjct: 313 FMCAGSIIHNMKNS----QDIRMMGSLSMSMPLTCSCFNVANLAL 353
>ATC3_SCHPO (P22189) Calcium-transporting ATPase 3 (EC 3.6.3.8)| Length = 1037 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%) Frame = +1 Query: 22 GLMIWIEGGDVGSIIHM------VAKLKQEKECGLIKT-SDPMDRITTHGTHDWAHTHMQ 180 G WIEGG + +II + + + K EK ++T + PM +T D +H+ Sbjct: 80 GTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKTDAIDSHLL 139 Query: 181 LP 186 +P Sbjct: 140 VP 141
>ATS12_HUMAN (P58397) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1593 Score = 29.3 bits (64), Expect = 2.4 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Frame = -3 Query: 272 CVHPSKEKAAFATSRQFSWPLQWS------CYLCVGSCICVCAQSCV-----PCVVIRSM 126 C H K K + +R P W+ C + G + + + +C PC V R Sbjct: 925 CQHLLKPKTLLSCNRDILCPSDWTVGNWSECSVSCGGGVRIRSVTCAKNHDEPCDVTRKP 984 Query: 125 GSLVLIS----PHSFSCFNLATICMMDPTSPPSIQIINPPTKR 9 S L P S + + +PP+++ + PPT R Sbjct: 985 NSRALCGLQQCPSSRRVLKPNKGTISNGKNPPTLKPVPPPTSR 1027
>NU5M_LOCMI (Q36428) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 572 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -3 Query: 197 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 ++C GS I S IR MGS++ P + CFN++++C+ Sbjct: 307 FMCAGSMIHNLRDS----QDIRFMGSIIHFMPLTSICFNVSSLCL 347
>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 383 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 221 SWPLQWSCYLCVGSCICVCAQSC 153 +WPL W+C CV + I V A C Sbjct: 85 AWPLYWACQGCVLTGIWVIAHEC 107
>FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 575 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -3 Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 153 VI C D S C C+HP+ ++ FATS + P+ +C C G+C+ C S Sbjct: 4 VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60 Query: 152 V 150 + Sbjct: 61 I 61
>FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 575 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -3 Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQ-FSWPLQWSCYLCVGSCICVCAQSC 153 VI C D S C C+HP+ ++ FATS + P+ +C C G+C+ C S Sbjct: 4 VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60 Query: 152 V 150 + Sbjct: 61 I 61
>MURF_BACSU (P96613) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase| (EC 6.3.2.10) (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) Length = 457 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +1 Query: 1 GMNLLVGGLMIWIEGGDVGSIIHMVAKLKQEKECGLIKTSDPMDRITTHG 150 G +LV G M+ E GD+ H KECG + + D +DR+ T+G Sbjct: 353 GKKMLVLGDML--ELGDLEETFH--------KECGAVISPDKIDRVFTYG 392
>VHUB_METVO (Q00388) Polyferredoxin protein vhuB| Length = 398 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -3 Query: 203 SCYLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATIC 66 +C LC CA +C ++ + G L+ S C N AT C Sbjct: 33 TCTLCFS-----CASACPTGALVENNGKLIYNSSKCIKCGNCATAC 73
>HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor| Length = 86 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 186 RQLHMRMCPVMRAVCCNSVHGIAC 115 RQ+H+ +C +CCN H I C Sbjct: 61 RQIHLSLC----GLCCNCCHNIGC 80
>SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 649 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Frame = +1 Query: 64 IHMVAKLKQEKECGLIKTSDPMDRITTHGTH----DWAHTHMQLPTHK*HDHCSGQLNCR 231 +H + K ++CG + S P+ + + +W + + QL H+ +L C+ Sbjct: 395 LHSCFQTKMVEKCGCAQYSQPLPPAANYCNYQQHPNWMYCYYQL--HR--AFVQEELGCQ 450 Query: 232 EVAKAAFSLDGWT 270 V K A S WT Sbjct: 451 SVCKEACSFKEWT 463
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 27.7 bits (60), Expect = 7.0 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 15/95 (15%) Frame = -2 Query: 342 LQEQRVRSYPCDVHARLKQWRP-VLCPSIQRE------SR--------FCNFSTVQLAAA 208 ++ Q VRS CD+H + P C +I+R+ SR C + +QL A Sbjct: 23 IRGQTVRSKRCDIHTKFVTHTPCTACAAIRRQLCPWGWSRNFPEKILLDCRYE-LQLRGA 81 Query: 207 MVVLFMCRQLHMRMCPVMRAVCCNSVHGIACLN*P 103 + L C Q + V++ CC G C P Sbjct: 82 AISLSGCSQECWK--DVVQKACCPGYWGSQCFECP 114
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = -3 Query: 236 TSRQFSWPLQWSCYLC--VGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSCFNLATICM 63 T+RQ P + C+ C G + C + + +R++G PH S TIC Sbjct: 398 TARQCRAPRRQGCWKCGKTGHIMSKCPERQAGFLRVRTLGKEASQLPHDPSASGSDTICT 457 Query: 62 MDPTS 48 D S Sbjct: 458 PDEPS 462
>RA54B_CHICK (Q9DG67) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 918 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -3 Query: 236 TSRQFSWPLQWSCYLCVGSCICVCAQSCVPCVVIRSMGSLVLISPH-SFSC-FNLATICM 63 T +QF P++ +C I + QSC P SLV+ P+ S C FN A + + Sbjct: 231 TMKQFCKPIKSACQPSTKENILLNPQSCKPRHNPNDTNSLVMPRPNASHQCMFNKAGLPV 290 Query: 62 MDPTSPPSI 36 +D P I Sbjct: 291 VDVVVDPYI 299
>CT059_HUMAN (Q9BYT1) Putative transporter C20orf59| Length = 436 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -3 Query: 263 PSKEKAAFATSRQFSWP--LQWSCYLCVGSCICVCAQSCVP-CVVIRS 129 P + + A Q+S P W+ L +G+C+ CA+S +P C V S Sbjct: 5 PDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMS 52
>ZN524_MOUSE (Q9D0B1) Zinc finger protein 524| Length = 321 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -2 Query: 312 CDVHARLKQWRPVLCPSIQRES 247 C++HA L+ +R VLCP RE+ Sbjct: 156 CNIHAGLRPFRCVLCPRRFREA 177
>FPRB_MYCLE (O33064) Probable ferredoxin/ferredoxin--NADP reductase (EC| 1.18.1.2) (FNR) Length = 555 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 3/107 (2%) Frame = -3 Query: 320 VIHVMCMQD*SNGDLC---CVHPSKEKAAFATSRQFSWPLQWSCYLCVGSCICVCAQSCV 150 +I C D S C C+HP+ ++ FATS L + CV +CV Sbjct: 4 IITQSCCNDGSCVFACPVNCIHPTPDEPGFATSEM----------LYIDPVACVDCGACV 53 Query: 149 PCVVIRSMGSLVLISPHSFSCFNLATICMMDPTSPPSIQIINPPTKR 9 + ++ S ++P + P P +++ PPT + Sbjct: 54 SACPVGAIASDTRLAPKQLPFIEIN--ASYYPARPIDLKL--PPTSK 96
>TSP2_HUMAN (P35442) Thrombospondin-2 precursor| Length = 1172 Score = 27.3 bits (59), Expect = 9.1 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 8/102 (7%) Frame = -2 Query: 384 PVHTQGGRHQGPGLLQEQRVRSYPCDVHARLKQWRP-----VLCP-SIQRESRFCNFSTV 223 PV GG++ + + + PC + R W P V C I+ +R CN Sbjct: 467 PVPQMGGKNCKGSGRETKACQGAPCPIDGRWSPWSPWSACTVTCAGGIRERTRVCNSPEP 526 Query: 222 QLAA-AMVVLFMCRQL-HMRMCPVMRAVCCNSVHGIACLN*P 103 Q A V RQ+ + R CPV + G C + P Sbjct: 527 QYGGKACVGDVQERQMCNKRSCPVDGCLSNPCFPGAQCSSFP 568 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,095,956 Number of Sequences: 219361 Number of extensions: 1148925 Number of successful extensions: 3165 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3157 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
