Clone Name | rbart38h11 |
---|---|
Clone Library Name | barley_pub |
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 391 bits (197), Expect = e-105 Identities = 348/392 (88%), Gaps = 16/392 (4%) Strand = Plus / Minus Query: 12 cttggttggcggattgatgatttggatagaa-ggtggcgacgttgggtccatcatacata 70 |||| |||| |||||||||| || ||||||| |||||||||||||| || |||||||||| Sbjct: 1273 cttgcttggtggattgatgacttagatagaaaggtggcgacgttggatcgatcatacata 1214 Query: 71 tggtcgctaaattaaaaca------ggaaaaggaatgcgggctaattaagacaagcgatc 124 ||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| Sbjct: 1213 tggtcgctaaatttaaatacaagtaggaaaagcaatgcgggctaattaagacaagcgatc 1154 Query: 125 ccatggaccgaattacaacacacggcacgcatgactgggc-acatac---gcatatgcag 180 |||||||||||||||||| |||||||||||||||| || | || ||| |||||||||| Sbjct: 1153 ccatggaccgaattacaagacacggcacgcatgaccggaccacgtactacgcatatgcag 1094 Query: 181 ctgccgacacataaataacacgaccattgcagcggcc-aactgaactgtcgagaagttgc 239 |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| Sbjct: 1093 ctgccgacacataa-taacacgaccattgcggcggccgaactgaactgtcgagaagttgc 1035 Query: 240 aaaagcggctttctctttggatggatggacacagcacaggtcgccattgcttcaatcttg 299 ||||||| ||||||| |||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 1034 aaaagcgcatttctctctggatggatggacacaacacgggtcgccattgcttcagtcttg 975 Query: 300 catgcacatcacatg---gataactccttacgcgttgctcctgaaggagcccagggcctt 356 ||| || || ||||| ||||||| |||||||||||||||||||||||| |||||||| Sbjct: 974 catacagatgacatggatgataacttgttacgcgttgctcctgaaggagccgagggcctt 915 Query: 357 gatggcgcccgccctgagtatgtactggtggt 388 ||||||||| |||||||| ||||||||||||| Sbjct: 914 gatggcgccggccctgaggatgtactggtggt 883
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 865 Query: 386 ggt 388 ||| Sbjct: 864 ggt 862
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgccagcccggaggatgtactggt 813 Query: 386 ggt 388 ||| Sbjct: 812 ggt 810
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||| Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 937 Query: 386 ggt 388 ||| Sbjct: 936 ggt 934
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggcccggaggatgtactggt 909 Query: 386 ggt 388 ||| Sbjct: 908 ggt 906
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 93.7 bits (47), Expect = 4e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||| Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcccgcccggaggatgtactggt 1587 Query: 386 ggt 388 ||| Sbjct: 1586 ggt 1584
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 386 ggt 388 ||| Sbjct: 918 ggt 916
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 386 ggt 388 ||| Sbjct: 920 ggt 918
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 386 ggt 388 ||| Sbjct: 921 ggt 919
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 15355793 Query: 386 ggt 388 ||| Sbjct: 15355792 ggt 15355790
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| |||||||||||||| || |||| ||| |||||||||| Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggccccagcccggaggatgtactggt 884 Query: 386 ggt 388 ||| Sbjct: 883 ggt 881
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||||||||||| ||| |||| ||| |||||||||| Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggcccggaggatgtactggt 485 Query: 386 ggt 388 ||| Sbjct: 484 ggt 482
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 62792 Query: 386 ggt 388 ||| Sbjct: 62791 ggt 62789
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 386 ggt 388 ||| Sbjct: 918 ggt 916
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 513 Query: 386 ggt 388 ||| Sbjct: 512 ggt 510
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 919 Query: 386 ggt 388 ||| Sbjct: 918 ggt 916
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 |||||||||||||||||||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggcccggaggatgtactggt 922 Query: 386 ggt 388 ||| Sbjct: 921 ggt 919
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 326 acgcgttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggt 385 ||||||||||||||| |||||| ||||| ||||||||||| |||| ||| |||||||||| Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggcccggaggatgtactggt 921 Query: 386 ggt 388 ||| Sbjct: 920 ggt 918
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 65.9 bits (33), Expect = 9e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 837 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 781
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 65.9 bits (33), Expect = 9e-08 Identities = 51/57 (89%) Strand = Plus / Plus Query: 330 gttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 91068
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 9e-08 Identities = 51/57 (89%) Strand = Plus / Plus Query: 330 gttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 8906759
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 65.9 bits (33), Expect = 9e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 936 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 880
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 65.9 bits (33), Expect = 9e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 930 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 874
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 65.9 bits (33), Expect = 9e-08 Identities = 51/57 (89%) Strand = Plus / Minus Query: 330 gttgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 924 gttgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 868
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 332 tgctcctgaaggagcccagggccttgatggcgcccgccctgagtatgtactggtg 386 |||||| |||||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct: 821 tgctccggaaggagcccagcgccttgatggctgccgcccggaggatgtactggtg 767
>gb|DQ202709.1| Olea europaea plasma membrane intrinsic protein (pip2) mRNA, complete cds Length = 1260 Score = 42.1 bits (21), Expect = 1.3 Identities = 57/68 (83%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 323 cttacgcgttgctcctga--aggagcccagggccttgatggcgcccgccctgagtatgta 380 |||| ||||||||||||| | || ||||| ||||||||||| || ||||| || ||||| Sbjct: 946 cttaagcgttgctcctgagaaagatcccagtgccttgatggctcctgcccttaggatgta 887 Query: 381 ctggtggt 388 ||||||| Sbjct: 886 ttggtggt 879
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 aaattaaaacaggaaaaggaa 99 ||||||||||||||||||||| Sbjct: 624952 aaattaaaacaggaaaaggaa 624932
>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence Length = 199569 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ttaaaacaggaaaaggaatg 101 |||||||||||||||||||| Sbjct: 92945 ttaaaacaggaaaaggaatg 92926
>emb|BX545848.23| Zebrafish DNA sequence from clone DKEY-8O19 in linkage group 20 Contains the gene for a novel protein (zgc:63746), the gene for a novel protein (zgc:55614), the gene for the 5' end of a novel protein similar to mouse and human cyclin-dependent kinase (CDC2-like) 11 (CDK11), the gene for a novel protein similar to vertebrate mitogen-activated protein kinase kinase kinase 5 (MAP3K5), a novel gene and eleven CpG islands, complete sequence Length = 199986 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gctaaattaaaacaggaaaa 95 |||||||||||||||||||| Sbjct: 129625 gctaaattaaaacaggaaaa 129606
>gb|AC026898.8| Homo sapiens chromosome 18, clone RP11-767C4, complete sequence Length = 187295 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tcctgaaggagcccagggcc 354 |||||||||||||||||||| Sbjct: 108625 tcctgaaggagcccagggcc 108644
>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence Length = 157375 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttaaaacaggaaaaggaatg 101 |||||||||||||||||||| Sbjct: 143776 ttaaaacaggaaaaggaatg 143795
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tttctctttggatggatgga 268 |||||||||||||||||||| Sbjct: 79799 tttctctttggatggatgga 79818
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattaaaacaggaaaagga 98 |||||||||||||||||||| Sbjct: 751943 aaattaaaacaggaaaagga 751962
>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036E06 Length = 137926 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattaaaacaggaaaagga 98 |||||||||||||||||||| Sbjct: 30074 aaattaaaacaggaaaagga 30093
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattaaaacaggaaaagga 98 |||||||||||||||||||| Sbjct: 108838 aaattaaaacaggaaaagga 108857
>gb|AF234652.1|AF234652 Mesembryanthemum crystallinum protein kinase MK5 mRNA, complete cds Length = 1738 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cacatcacatggataactcc 323 |||||||||||||||||||| Sbjct: 1020 cacatcacatggataactcc 1001
>emb|BX248523.8| Zebrafish DNA sequence from clone CH211-257G8 in linkage group 20, complete sequence Length = 169849 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gctaaattaaaacaggaaaa 95 |||||||||||||||||||| Sbjct: 35269 gctaaattaaaacaggaaaa 35288
>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane intrinsic protein mRNA, complete cds Length = 1120 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 331 ttgctcctgaaggagcccagggccttgatggc 362 |||||||||||||| || || ||||||||||| Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tatggtcgctaaattaaaac 88 |||||||||||||||||||| Sbjct: 4757676 tatggtcgctaaattaaaac 4757657
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tatggtcgctaaattaaaac 88 |||||||||||||||||||| Sbjct: 4688695 tatggtcgctaaattaaaac 4688676
>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5 Length = 178420 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttaaaacaggaaaaggaatg 101 |||||||||||||||||||| Sbjct: 145388 ttaaaacaggaaaaggaatg 145407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,405,879 Number of Sequences: 3902068 Number of extensions: 3405879 Number of successful extensions: 54516 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 54363 Number of HSP's gapped (non-prelim): 150 length of query: 388 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 366 effective length of database: 17,147,199,772 effective search space: 6275875116552 effective search space used: 6275875116552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)