ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38h10 |
|---|---|
| Clone Library Name | barley_pub |
>FSHR_CHICK (P79763) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 693 Score = 32.3 bits (72), Expect = 0.81 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = -3 Query: 295 HARIMNCLCRQALAPGSQVPGVFVGLRRVMFYVVDCICAVCVSCIFMNPS 146 + ++ CL P SQ +F+ + V+ +V+ CIC +C+ NP+ Sbjct: 511 YMKVSICLPMHIETPFSQAYVIFLLVLNVLAFVIICICYICIYFTVRNPN 560
>FURIN_BOVIN (Q28193) Furin precursor (EC 3.4.21.75) (Paired basic amino acid| residue-cleaving enzyme) (PACE) (Dibasic-processing enzyme) (Trans Golgi network protease furin) Length = 797 Score = 31.6 bits (70), Expect = 1.4 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +1 Query: 178 QRICSRQHKTSHDANQQRPPAPESP 252 ++ CSRQ ++S +++QQ+PP P P Sbjct: 672 EQTCSRQSQSSRESHQQQPPPPPRP 696
>EFTU_CHICK (P84172) Elongation factor Tu, mitochondrial precursor (EF-Tu)| (Fragment) Length = 352 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/68 (30%), Positives = 28/68 (41%) Frame = +2 Query: 5 HANTAFIGHKHVHTEN*TAFITQVSNAEN*GRIQQVHIHGKAWPYKTRGVHKNTAHAHSA 184 H N IGH TA IT+V + R Q+ KA + RG+ N AH + Sbjct: 47 HVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYEDIDKAPEERARGITINAAHVEYS 106 Query: 185 YAVDNIKH 208 A + H Sbjct: 107 TARRHYAH 114
>FSHR_CAIMO (Q7ZTV5) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 693 Score = 30.4 bits (67), Expect = 3.1 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = -3 Query: 295 HARIMNCLCRQALAPGSQVPGVFVGLRRVMFYVVDCICAVCVSCIFMNPS 146 + ++ CL P SQ +F+ + V+ +V+ C C +C+ NP+ Sbjct: 511 YMKVSICLPMDIETPFSQAYVIFLLVLNVLAFVIICACYICIYFTVRNPN 560
>FSHR_BOVIN (P35376) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 42 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 185 I +TR RSLP Y ++ ++ + TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIRSLPSYGLENLKKLRAKSTYRLKKLPSLEKFVTLVEASLTYPSH 274
>FSHR_SHEEP (P35379) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 42 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 185 I +TR RSLP Y ++ ++ + TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIRSLPSYGLENLKKLRAKSTYHLKKLPSLEKFVTLVEASLTYPSH 274
>FSHR_MACFA (P32212) Follicle-stimulating hormone receptor precursor (FSH-R)| (Follitropin receptor) Length = 695 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 42 IQKTRQRSLPKYPMQKTREEYNRYTYMGK--PGLTKQEGFIKIQLTHTAH 185 I +TR SLP Y ++ ++ R TY K P L K ++ LT+ +H Sbjct: 225 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPSLEKLVALMEASLTYPSH 274
>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog| Length = 1278 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = +1 Query: 91 LGKNTTGTHTWESLALQNKRGS*KYSSRTQRICS---RQHKTSHDANQQRPPAPESPALK 261 L + + + +WE + + S K RT+ +C +HK ++ +R + E+P Sbjct: 311 LSRKRSSSDSWELSGSKQNKFSDK---RTEELCGLRPEKHKRTYHTKSKRVLSREAPRHI 367 Query: 262 PADKDSS*YERACAVDGCWIELL 330 P+++ Y+ C D W L Sbjct: 368 PSERKV--YQTHCTEDSWWCSAL 388
>EFTU_THEAQ (Q01698) Elongation factor Tu (EF-Tu)| Length = 405 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +2 Query: 5 HANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHAHS 181 H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70 Query: 182 AYAVDNIKH 208 A + H Sbjct: 71 ETAKRHYSH 79
>EFTU1_THETH (P60338) Elongation factor Tu-A (EF-Tu-A)| Length = 405 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +2 Query: 5 HANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHAHS 181 H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70 Query: 182 AYAVDNIKH 208 A + H Sbjct: 71 ETAKRHYSH 79
>EFTU1_THET8 (Q5SHN6) Elongation factor Tu-A (EF-Tu-A)| Length = 405 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +2 Query: 5 HANTAFIGHKHVHTEN*TAFITQVSNAEN*G-RIQQVHIHGKAWPYKTRGVHKNTAHAHS 181 H N IGH TA +T V+ AEN ++ KA + RG+ NTAH Sbjct: 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEY 70 Query: 182 AYAVDNIKH 208 A + H Sbjct: 71 ETAKRHYSH 79
>HXA9_HUMAN (P31269) Homeobox protein Hox-A9 (Hox-1G)| Length = 272 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = +2 Query: 365 ASWFPCAPVGCHCLSFLCVHQAHHDTRAHPPAQCAA 472 ASW P G + + H HH HP A AA Sbjct: 65 ASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAA 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,855,358 Number of Sequences: 219361 Number of extensions: 1602365 Number of successful extensions: 4575 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4408 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4575 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
