>IF2_PSEPK (Q88DV7) Translation initiation factor IF-2|
          Length = 846

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 39  RTSNSNKQRINKGRGDQSEIKKKSTHGIQRDQG 137
           RT++       +GRG +S++KK++ HG Q   G
Sbjct: 229 RTTDEESDGARRGRGGKSKLKKRNQHGFQNPTG 261

>H1_EMENI (Q9P8F8) Histone H1|
          Length = 200

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +3

Query: 3   QPANKHRSFIQIRTSNSNKQRINKGRGDQSEIKKKSTHGIQRDQGNPSYNHSNTRGTMIA 182
           +PA   ++    +T+     +  K    ++   KK+  G+++  G P  N +  R    A
Sbjct: 104 KPATTTKTAAPKKTATKKADKAEKAEKPKT---KKTNAGVKKPAGRPKANTAKPRKASTA 160

Query: 183 AYSVQDAPRINRSTELSR 236
           A +V D P++   T+  R
Sbjct: 161 APAVVDKPKVVSVTKSGR 178

>YJH1_YEAST (P40360) Hypothetical 65.6 kDa protein in SMC3-MRPL8 intergenic|
           region
          Length = 574

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 106 NQHMEYKGTKETHRIITLTLEEP*SQHIQYRM 201
           +Q +E+  +  +H I TLT  EP SQ++ +RM
Sbjct: 212 SQELEHLSSSLSHNISTLTKREPRSQNLLHRM 243

>RBP1A_XENLA (Q9PT60) RalA-binding protein 1-A (RalBP1-A) (Ral-interacting|
           protein 1-A) (XRLIP2) (XRLIP76-A) (RIP1-A)
          Length = 654

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 51  SNKQRINKGRGDQSEIKKKSTHGIQRDQGNPSYNHSNTRGTMIAAYSVQDAPRINRSTEL 230
           + K+ I++ R + SEI+ +  HG    +   S + S +       Y ++D  R N   E+
Sbjct: 504 TEKEEIDRLRAEISEIQSRQQHGRSETEEYSSESESESEDEEELQYILEDLQRQNEELEI 563

>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6|
          Length = 1268

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
 Frame = +3

Query: 42   TSNSNKQRINKGRGDQSEIKKKSTHGIQ-----------RDQGNPSYNHSNTRGTMIAAY 188
            TSN +   +N+G    SE+KKK ++ ++            D   P Y  S +  T   ++
Sbjct: 1128 TSNGSSTDVNRGSRITSELKKKESNAVRGQPCGSCSPTNNDVSAPGY-ASRSHPTTDPSH 1186

Query: 189  SVQDAPRINR 218
            SV+ + RI R
Sbjct: 1187 SVRRSSRIRR 1196

>CADHN_XENLA (P20310) Neural-cadherin 1 precursor (N-cadherin 1)|
          Length = 905

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 QGNPSYNHSNTRGTMIAAYSVQDAP 206
           +GNP+Y  SNT   +IA   V D P
Sbjct: 356 EGNPTYGLSNTATAVIAVTDVNDNP 380

>CADHO_XENLA (P33147) Neural-cadherin 2 precursor (N-cadherin 2)|
          Length = 906

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 132 QGNPSYNHSNTRGTMIAAYSVQDAP 206
           +GNP+Y  SNT   +IA   V D P
Sbjct: 356 EGNPTYGLSNTATAVIAVTDVNDNP 380

>CADH2_BRARE (Q90275) Neural-cadherin precursor (N-cadherin) (Cadherin-2)|
           (ZNCAD)
          Length = 893

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 132 QGNPSYNHSNTRGTMIAAYSVQD-APRINRST 224
           +GNP+Y  SNT   +I    V D AP   R T
Sbjct: 342 EGNPTYGLSNTATAVIRLLDVNDNAPEFTRET 373

>IF2_PSEAE (Q9HV55) Translation initiation factor IF-2|
          Length = 840

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 75  GRGDQSEIKKKSTHGIQRDQG 137
           GRG +S++KK++ HG Q   G
Sbjct: 235 GRGGKSKLKKRNQHGFQNPTG 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,554,224
Number of Sequences: 219361
Number of extensions: 696916
Number of successful extensions: 1557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)