ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
2emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 98 2e-17
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
4dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
5ref|XM_471560.1| Oryza sativa (japonica cultivar-group), predic... 44 0.27
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
7dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
8dbj|AK100512.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
9gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosom... 42 1.1
10gb|AC138605.1| Mus musculus BAC clone RP23-392L23 from chromosom... 42 1.1
11gb|AC146202.3| Pan troglodytes BAC clone RP43-35A11 from 7, comp... 42 1.1
12gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.1
13emb|AL133355.13| Human DNA sequence from clone RP11-541N10 on ch... 42 1.1
14gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, comp... 42 1.1
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
16gb|AC007606.8| Homo sapiens chromosome 16 clone RP11-35P16, comp... 42 1.1
17gb|AC023830.9| Homo sapiens chromosome 16 clone RP11-709D24, com... 42 1.1
18dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.1
19gb|AE000657.1| Aquifex aeolicus VF5, complete genome 42 1.1
20dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosom... 40 4.2
22ref|NM_031333.1| Rattus norvegicus cadherin 2 (Cdh2), mRNA 40 4.2
23gb|AC153147.7| Mus musculus BAC clone RP23-205D14 from chromosom... 40 4.2
24gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.2
25gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, comp... 40 4.2
26gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, com... 40 4.2
27gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosom... 40 4.2
28gb|BT011420.1| Drosophila melanogaster AT07459 full insert cDNA 40 4.2
29gb|AC134534.3| Mus musculus BAC clone RP24-562E3 from chromosome... 40 4.2
30ref|XM_571479.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 4.2
31gb|AC129194.3| Mus musculus BAC clone RP24-147H7 from chromosome... 40 4.2
32gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, ... 40 4.2
33gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome... 40 4.2
34gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, co... 40 4.2
35gb|AC125576.4| Rattus norvegicus 18 BAC CH230-9F9 (Children's Ho... 40 4.2
36gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, co... 40 4.2
37emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in ... 40 4.2
38dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, c... 40 4.2
39gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 4.2
40gb|AY118680.1| Drosophila melanogaster AT10348 full insert cDNA 40 4.2
41ref|NM_169941.1| Drosophila melanogaster Na/Ca-exchange protein ... 40 4.2
42ref|NM_169940.1| Drosophila melanogaster Na/Ca-exchange protein ... 40 4.2
43ref|NM_079699.2| Drosophila melanogaster Na/Ca-exchange protein ... 40 4.2
44gb|AC019084.9| Homo sapiens BAC clone RP11-354O2 from 7, complet... 40 4.2
45ref|XM_624313.1| PREDICTED: Apis mellifera similar to GA19045-PA... 40 4.2
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
47dbj|AB210446.1| Ciona intestinalis mRNA for transcription factor... 40 4.2
48gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, r... 40 4.2
49gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y... 40 4.2
50ref|XM_579508.1| PREDICTED: Rattus norvegicus hypothetical gene ... 40 4.2
51ref|XM_574905.1| PREDICTED: Rattus norvegicus ring finger protei... 40 4.2
52gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosom... 40 4.2
53dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 4.2
54gb|M74895.1|SMFPOLORF Simian foamy virus type 3, gag polyprotein... 40 4.2
55dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
56dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
57gb|AC150271.4| Mus musculus BAC clone RP23-289F8 from 7, complet... 40 4.2
58gb|AY110793.1| Zea mays CL9336_1 mRNA sequence 40 4.2
59gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71... 40 4.2
60gb|AF097593.1|AF097593 Rattus norvegicus testicular N-cadherin m... 40 4.2
61gb|BC087100.1| Rattus norvegicus ring finger protein 29, mRNA (c... 40 4.2
62ref|NM_001012218.1| Rattus norvegicus ring finger protein 29 (Rn... 40 4.2
63gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete... 40 4.2
64gb|AC132609.3| Mus musculus BAC clone RP23-351O8 from 12, comple... 40 4.2
65gb|AF009897.1|AF009897 Drosophila melanogaster 3Na(+)-1Ca(2+) ex... 40 4.2
66gb|AC104451.2| Homo sapiens chromosome 3 clone RP11-632N2, compl... 40 4.2
67dbj|AB017695.1| Rattus norvegicus mRNA for N-cadherin, complete cds 40 4.2 
>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24,
            complete sequence
          Length = 132465

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                        
Query: 236  aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaagggcttca 295
            ||||||||||||| ||||||||||||||||| |||||||| || |||||||  | |||||
Sbjct: 5381 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 5440

                                     
Query: 296  ccctggtcttcctctcctccaggag 320
            ||||| ||||||||||||| |||||
Sbjct: 5441 ccctgctcttcctctcctcaaggag 5465
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
              complete sequence
          Length = 185211

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                          
Query: 236    aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaagggcttca 295
              ||||||||||||| ||||||||||||||||| |||||||| || |||||||  | |||||
Sbjct: 156239 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 156298

                                       
Query: 296    ccctggtcttcctctcctccaggag 320
              ||||| ||||||||||||| |||||
Sbjct: 156299 ccctgctcttcctctcctcaaggag 156323
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                            
Query: 236      aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaagggcttca 295
                ||||||||||||| ||||||||||||||||| |||||||| || |||||||  | |||||
Sbjct: 12331355 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 12331414

                                         
Query: 296      ccctggtcttcctctcctccaggag 320
                ||||| ||||||||||||| |||||
Sbjct: 12331415 ccctgctcttcctctcctcaaggag 12331439
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>dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full
            insert sequence
          Length = 1549

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 236  aggctgagcactactccttgaaggacatgaccgtctcgaaggcccctaccaagggcttca 295
            ||||||||||||| ||||||||||||||||| |||||||| || |||||||  | |||||
Sbjct: 1325 aggctgagcactattccttgaaggacatgacggtctcgaacgcgcctaccagagccttca 1266

                                     
Query: 296  ccctggtcttcctctcctccaggag 320
            ||||| ||||||||||||| |||||
Sbjct: 1265 ccctgctcttcctctcctcaaggag 1241
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>ref|XM_471560.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2922

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 291  cttcaccctggtcttcctctcctccaggag 320
            |||||||||| ||||||||||||| |||||
Sbjct: 1377 cttcaccctgctcttcctctcctcaaggag 1348
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                  
Query: 261      catgaccgtctcgaaggcccctaccaagggcttcaccctggtcttcctct 310
                ||||||||||||||| ||||| ||||  | ||||||| || |||||||||
Sbjct: 28687689 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctct 28687640
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0622F03
          Length = 170064

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 261   catgaccgtctcgaaggcccctaccaagggcttcaccctggtcttcctct 310
             ||||||||||||||| ||||| ||||  | ||||||| || |||||||||
Sbjct: 88255 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctct 88206
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>dbj|AK100512.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O06, full
            insert sequence
          Length = 2301

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 261  catgaccgtctcgaaggcccctaccaagggcttcaccctggtcttcctct 310
            ||||||||||||||| ||||| ||||  | ||||||| || |||||||||
Sbjct: 1886 catgaccgtctcgaacgccccaaccagcgccttcaccttgctcttcctct 1837
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>gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosome 16, complete
             sequence
          Length = 171261

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 299   tggtcttcctctcctccagga 319
             |||||||||||||||||||||
Sbjct: 30909 tggtcttcctctcctccagga 30889
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>gb|AC138605.1| Mus musculus BAC clone RP23-392L23 from chromosome 16, complete
             sequence
          Length = 172684

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 299   tggtcttcctctcctccagga 319
             |||||||||||||||||||||
Sbjct: 44301 tggtcttcctctcctccagga 44321
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>gb|AC146202.3| Pan troglodytes BAC clone RP43-35A11 from 7, complete sequence
          Length = 161532

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 239   ctgagcactactccttgaagg 259
             |||||||||||||||||||||
Sbjct: 82751 ctgagcactactccttgaagg 82771
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 55      acaagcagcgcatcaacaagg 75
               |||||||||||||||||||||
Sbjct: 1482723 acaagcagcgcatcaacaagg 1482743
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>emb|AL133355.13| Human DNA sequence from clone RP11-541N10 on chromosome 10 Contains the
             5' end of the SH3MD1 gene for SH3 multiple domains 1, a
             novel gene and two CpG islands, complete sequence
          Length = 190882

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 292   ttcaccctggtcttcctctcc 312
             |||||||||||||||||||||
Sbjct: 62494 ttcaccctggtcttcctctcc 62514
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>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence
          Length = 171696

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 95     aataaagaaaaaatcaacacatgga 119
              |||||||||||||| ||||||||||
Sbjct: 115322 aataaagaaaaaataaacacatgga 115298
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 98       aaagaaaaaatcaacacatggaatacaaaggga 130
                |||||||| | |||||| |||||||||||||||
Sbjct: 18153006 aaagaaaacaacaacacctggaatacaaaggga 18152974
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>gb|AC007606.8| Homo sapiens chromosome 16 clone RP11-35P16, complete sequence
          Length = 157477

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    aaagggaccaaggaaacccat 144
              |||||||||||||||||||||
Sbjct: 130979 aaagggaccaaggaaacccat 130999
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>gb|AC023830.9| Homo sapiens chromosome 16 clone RP11-709D24, complete sequence
          Length = 182662

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   aaagggaccaaggaaacccat 144
             |||||||||||||||||||||
Sbjct: 52114 aaagggaccaaggaaacccat 52134
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>dbj|AB010072.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6
          Length = 83698

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    agtccgaaataaagaaaaaat 108
             |||||||||||||||||||||
Sbjct: 56808 agtccgaaataaagaaaaaat 56828
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 302     tcttcctctcctccaggagct 322
               |||||||||||||||||||||
Sbjct: 1120091 tcttcctctcctccaggagct 1120071
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>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1090H08
          Length = 200720

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 98     aaagaaaaaatcaacacatggaatacaaaggga 130
              |||||||| | |||||| |||||||||||||||
Sbjct: 156802 aaagaaaacaacaacacctggaatacaaaggga 156770
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>gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosome 7, complete sequence
          Length = 218284

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ataaagaaaaaatcaacaca 115
             ||||||||||||||||||||
Sbjct: 39115 ataaagaaaaaatcaacaca 39096
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>ref|NM_031333.1| Rattus norvegicus cadherin 2 (Cdh2), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  cctggtcttcctctcctcca 316
            ||||||||||||||||||||
Sbjct: 2686 cctggtcttcctctcctcca 2667
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>gb|AC153147.7| Mus musculus BAC clone RP23-205D14 from chromosome 12, complete sequence
          Length = 206281

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 288    gggcttcaccctggtcttcctctc 311
              |||||||||||||| |||||||||
Sbjct: 169914 gggcttcaccctggccttcctctc 169937
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     caacagcaacaagcagcgca 66
              ||||||||||||||||||||
Sbjct: 134747 caacagcaacaagcagcgca 134728
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>gb|AC149789.1| Pan troglodytes BAC clone CH251-56H2 from Y, complete sequence
          Length = 172440

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   aaataaagaaaaaatcaaca 113
            ||||||||||||||||||||
Sbjct: 9065 aaataaagaaaaaatcaaca 9046
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>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence
          Length = 182113

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaataaagaaaaaatcaaca 113
              ||||||||||||||||||||
Sbjct: 179810 aaataaagaaaaaatcaaca 179791
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>gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosome 7, complete sequence
          Length = 155682

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     ataaagaaaaaatcaacaca 115
              ||||||||||||||||||||
Sbjct: 148640 ataaagaaaaaatcaacaca 148621
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>gb|BT011420.1| Drosophila melanogaster AT07459 full insert cDNA
          Length = 3747

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  cagcaacagcaacaagcagc 63
           ||||||||||||||||||||
Sbjct: 457 cagcaacagcaacaagcagc 476
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>gb|AC134534.3| Mus musculus BAC clone RP24-562E3 from chromosome 7, complete sequence
          Length = 185268

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     ataaagaaaaaatcaacaca 115
              ||||||||||||||||||||
Sbjct: 182682 ataaagaaaaaatcaacaca 182701
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>ref|XM_571479.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNF00370) partial mRNA
          Length = 2912

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   caacagcaacaagcagcgca 66
            ||||||||||||||||||||
Sbjct: 1166 caacagcaacaagcagcgca 1185
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>gb|AC129194.3| Mus musculus BAC clone RP24-147H7 from chromosome 7, complete sequence
          Length = 124950

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     ataaagaaaaaatcaacaca 115
              ||||||||||||||||||||
Sbjct: 118394 ataaagaaaaaatcaacaca 118413
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>gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, complete sequence
          Length = 196117

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 277   gcccctaccaagggcttcaccctggtcttcct 308
             ||||||| |||||||||||||| |||| ||||
Sbjct: 96082 gcccctagcaagggcttcacccgggtcctcct 96113
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>gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome 7, complete sequence
          Length = 160293

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ataaagaaaaaatcaacaca 115
             ||||||||||||||||||||
Sbjct: 55102 ataaagaaaaaatcaacaca 55121
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>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence
          Length = 176345

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaataaagaaaaaatcaaca 113
              ||||||||||||||||||||
Sbjct: 109504 aaataaagaaaaaatcaaca 109485
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>gb|AC125576.4| Rattus norvegicus 18 BAC CH230-9F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 237754

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   cctggtcttcctctcctcca 316
             ||||||||||||||||||||
Sbjct: 34018 cctggtcttcctctcctcca 34037
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>gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 277    gcccctaccaagggcttcaccctggtcttcct 308
              ||||||| |||||||||||||| |||| ||||
Sbjct: 158514 gcccctagcaagggcttcacccgggtcctcct 158483
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>emb|CR847868.9| Zebrafish DNA sequence from clone DKEYP-99G4 in linkage group 8, complete
              sequence
          Length = 147399

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aatcaacacatggaatacaa 125
              ||||||||||||||||||||
Sbjct: 123031 aatcaacacatggaatacaa 123012
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>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaataaagaaaaaatcaaca 113
              ||||||||||||||||||||
Sbjct: 128922 aaataaagaaaaaatcaaca 128903
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 94       aaataaagaaaaaatcaaca 113
                ||||||||||||||||||||
Sbjct: 20830078 aaataaagaaaaaatcaaca 20830097
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>gb|AY118680.1| Drosophila melanogaster AT10348 full insert cDNA
          Length = 3743

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  cagcaacagcaacaagcagc 63
           ||||||||||||||||||||
Sbjct: 460 cagcaacagcaacaagcagc 479
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>ref|NM_169941.1| Drosophila melanogaster Na/Ca-exchange protein CG5685-RC,
           transcript variant C (Calx), mRNA
          Length = 4726

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  cagcaacagcaacaagcagc 63
           ||||||||||||||||||||
Sbjct: 354 cagcaacagcaacaagcagc 373
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>ref|NM_169940.1| Drosophila melanogaster Na/Ca-exchange protein CG5685-RB,
           transcript variant B (Calx), mRNA
          Length = 4829

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  cagcaacagcaacaagcagc 63
           ||||||||||||||||||||
Sbjct: 457 cagcaacagcaacaagcagc 476
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>ref|NM_079699.2| Drosophila melanogaster Na/Ca-exchange protein CG5685-RA, transcript
            variant A (Calx), mRNA
          Length = 5390

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   cagcaacagcaacaagcagc 63
            ||||||||||||||||||||
Sbjct: 1018 cagcaacagcaacaagcagc 1037
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>gb|AC019084.9| Homo sapiens BAC clone RP11-354O2 from 7, complete sequence
          Length = 201215

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   tcttcctctcctccaggagc 321
             ||||||||||||||||||||
Sbjct: 23326 tcttcctctcctccaggagc 23307
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>ref|XM_624313.1| PREDICTED: Apis mellifera similar to GA19045-PA (LOC551928), mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   caacagcaacaagcagcgca 66
            ||||||||||||||||||||
Sbjct: 991  caacagcaacaagcagcgca 1010
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      cagtacaggatgcacccagg 209
                ||||||||||||||||||||
Sbjct: 27989889 cagtacaggatgcacccagg 27989870
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>dbj|AB210446.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: cilv047l24
          Length = 3256

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  cagcaacagcaacaagcagc 63
           ||||||||||||||||||||
Sbjct: 813 cagcaacagcaacaagcagc 832
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>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
             BACR05I01, complete sequence
          Length = 187151

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    cagcaacagcaacaagcagc 63
             ||||||||||||||||||||
Sbjct: 90375 cagcaacagcaacaagcagc 90394
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>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence
          Length = 176524

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaataaagaaaaaatcaaca 113
              ||||||||||||||||||||
Sbjct: 174013 aaataaagaaaaaatcaaca 173994
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>ref|XM_579508.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_031333
            (LOC497718), mRNA
          Length = 4345

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  cctggtcttcctctcctcca 316
            ||||||||||||||||||||
Sbjct: 2680 cctggtcttcctctcctcca 2661
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>ref|XM_574905.1| PREDICTED: Rattus norvegicus ring finger protein 29 (predicted)
           (Rnf29_predicted), mRNA
          Length = 2658

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 ggtcttcctctcctccagga 319
           ||||||||||||||||||||
Sbjct: 809 ggtcttcctctcctccagga 790
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>gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosome 7, complete sequence
          Length = 197003

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ataaagaaaaaatcaacaca 115
             ||||||||||||||||||||
Sbjct: 31471 ataaagaaaaaatcaacaca 31452
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    cctggtcttcctctcctcca 316
              ||||||||||||||||||||
Sbjct: 247655 cctggtcttcctctcctcca 247674
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>gb|M74895.1|SMFPOLORF Simian foamy virus type 3, gag polyprotein 3' end, pol polyprotein 3'
            end, env protein 3' end, orf1 3' end, orf2 partial cds,
            and orf3 3' end
          Length = 13111

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   accagcaacagcaacaagca 61
            ||||||||||||||||||||
Sbjct: 3467 accagcaacagcaacaagca 3486
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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cagtacaggatgcacccagg 209
             ||||||||||||||||||||
Sbjct: 33551 cagtacaggatgcacccagg 33532
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>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_G04
          Length = 124666

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    cagtacaggatgcacccagg 209
              ||||||||||||||||||||
Sbjct: 117341 cagtacaggatgcacccagg 117322
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>gb|AC150271.4| Mus musculus BAC clone RP23-289F8 from 7, complete sequence
          Length = 202277

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     ataaagaaaaaatcaacaca 115
              ||||||||||||||||||||
Sbjct: 184910 ataaagaaaaaatcaacaca 184929
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>gb|AY110793.1| Zea mays CL9336_1 mRNA sequence
          Length = 1098

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 283 accaagggcttcaccctggtcttcctctcctccaggagct 322
           ||||||| |||||||| | |||||||||||  ||||||||
Sbjct: 263 accaaggccttcacccggctcttcctctccagcaggagct 302
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>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the
             complete sequence
          Length = 235707

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    cagcaacagcaacaagcagc 63
             ||||||||||||||||||||
Sbjct: 14238 cagcaacagcaacaagcagc 14257
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>gb|AF097593.1|AF097593 Rattus norvegicus testicular N-cadherin mRNA, complete cds
          Length = 3036

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  cctggtcttcctctcctcca 316
            ||||||||||||||||||||
Sbjct: 2386 cctggtcttcctctcctcca 2367
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>gb|BC087100.1| Rattus norvegicus ring finger protein 29, mRNA (cDNA clone
           MGC:94677 IMAGE:7192411), complete cds
          Length = 2709

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 ggtcttcctctcctccagga 319
           ||||||||||||||||||||
Sbjct: 809 ggtcttcctctcctccagga 790
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>ref|NM_001012218.1| Rattus norvegicus ring finger protein 29 (Rnf29), mRNA
          Length = 2709

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 ggtcttcctctcctccagga 319
           ||||||||||||||||||||
Sbjct: 809 ggtcttcctctcctccagga 790
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>gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete sequence
          Length = 195392

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    ataaagaaaaaatcaacaca 115
             ||||||||||||||||||||
Sbjct: 31508 ataaagaaaaaatcaacaca 31489
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>gb|AC132609.3| Mus musculus BAC clone RP23-351O8 from 12, complete sequence
          Length = 200045

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 288   gggcttcaccctggtcttcctctc 311
             |||||||||||||| |||||||||
Sbjct: 23995 gggcttcaccctggccttcctctc 24018
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>gb|AF009897.1|AF009897 Drosophila melanogaster 3Na(+)-1Ca(2+) exchanger (Calx) mRNA,
            complete cds
          Length = 5408

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   cagcaacagcaacaagcagc 63
            ||||||||||||||||||||
Sbjct: 1022 cagcaacagcaacaagcagc 1041
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>gb|AC104451.2| Homo sapiens chromosome 3 clone RP11-632N2, complete sequence
          Length = 173103

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    gcactactccttgaaggaca 262
              ||||||||||||||||||||
Sbjct: 153941 gcactactccttgaaggaca 153960
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>dbj|AB017695.1| Rattus norvegicus mRNA for N-cadherin, complete cds
          Length = 4350

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 297  cctggtcttcctctcctcca 316
            ||||||||||||||||||||
Sbjct: 2686 cctggtcttcctctcctcca 2667


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,334,708
Number of Sequences: 3902068
Number of extensions: 3334708
Number of successful extensions: 93591
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93281
Number of HSP's gapped (non-prelim): 309
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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