ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38h07 |
|---|---|
| Clone Library Name | barley_pub |
>PTC_DROME (P18502) Protein patched (Hedgehog receptor)| Length = 1286 Score = 30.8 bits (68), Expect = 0.90 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 161 EISCSPLIHMTKAMFLNWLLLYTRKFEFCLKHVCTCSSLVLC 36 ++S PL+H + +L T FEF ++H C +VLC Sbjct: 1048 QMSLGPLVHGMLTSGVAVFMLSTSPFEFVIRHFCWLLLVVLC 1089
>ATPK_SCHPO (O94377) ATP synthase f chain, mitochondrial precursor (EC| 3.6.3.14) Length = 96 Score = 30.8 bits (68), Expect = 0.90 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = -1 Query: 266 SGRRMGRVTAFTSSGRHAPRLKRRS----AWSLNFWAPDEISCSPLIHMTKAMFLNWLLL 99 S RMGR+ F S H P K+ S +W + S +PL+H+ A+ + Sbjct: 25 SSARMGRIVDFYSRLPHGPAPKKSSNSFFSWYYKKYLGKNASGAPLLHLVGAVL---VFS 81 Query: 98 YTRKFEFCLKH 66 Y ++ + ++H Sbjct: 82 YASEYYYHIRH 92
>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA| cleavage complex II protein Pcf11) (Fragment) Length = 1654 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/42 (30%), Positives = 17/42 (40%) Frame = -1 Query: 308 VRNWLGAAGKARWKSGRRMGRVTAFTSSGRHAPRLKRRSAWS 183 V NW + RWKSG + P L+ R +WS Sbjct: 684 VENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRESWS 725
>DHSB_YEAST (P21801) Succinate dehydrogenase [ubiquinone] iron-sulfur protein,| mitochondrial precursor (EC 1.3.5.1) (IP) Length = 266 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 257 RMGRVTAFTSSGRHAPRLKRRSAWSLNFWAPDEISCSP 144 + G TA T++ H PRLK + + W PDE S P Sbjct: 16 KKGMATATTAAATHTPRLK---TFKVYRWNPDEPSAKP 50
>L_RABVP (P11213) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2142 Score = 27.7 bits (60), Expect = 7.6 Identities = 21/70 (30%), Positives = 29/70 (41%) Frame = -1 Query: 212 PRLKRRSAWSLNFWAPDEISCSPLIHMTKAMFLNWLLLYTRKFEFCLKHVCTCSSLVLCS 33 P + R S ++LN SPLI + L WL R + L C+ S VL Sbjct: 28 PNILRNSDYNLN---------SPLIEDPARLMLEWLKTGNRPYRMTLTDNCSRSFRVLKD 78 Query: 32 VYKT*SILSL 3 +K + SL Sbjct: 79 YFKKVDLGSL 88
>L_RABVS (P16289) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2127 Score = 27.7 bits (60), Expect = 7.6 Identities = 21/70 (30%), Positives = 29/70 (41%) Frame = -1 Query: 212 PRLKRRSAWSLNFWAPDEISCSPLIHMTKAMFLNWLLLYTRKFEFCLKHVCTCSSLVLCS 33 P + R S ++LN SPLI + L WL R + L C+ S VL Sbjct: 28 PNILRNSDYNLN---------SPLIEDPARLMLEWLKTGNRPYRMTLTDNCSRSFRVLKD 78 Query: 32 VYKT*SILSL 3 +K + SL Sbjct: 79 YFKKVDLGSL 88
>DNAJ_SALPA (Q5PDJ4) Chaperone protein dnaJ| Length = 374 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 105 GRQRAARGADLRYNMDLTLEEAVRGVTKEIRIP 137
>DNAJ_SALTY (P0A1G7) Chaperone protein dnaJ| Length = 378 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 109 GRQRAARGADLRYNMDLTLEEAVRGVTKEIRIP 141
>DNAJ_SALTI (P0A1G8) Chaperone protein dnaJ| Length = 378 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 109 GRQRAARGADLRYNMDLTLEEAVRGVTKEIRIP 141
>DNAJ_SALCH (Q57TP2) Chaperone protein dnaJ| Length = 378 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 109 GRQRAARGADLRYNMDLTLEEAVRGVTKEIRIP 141
>DNAJ_SHIFL (Q7UDU1) Chaperone protein dnaJ| Length = 375 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 106 GRQRAARGADLRYNMELTLEEAVRGVTKEIRIP 138
>DNAJ_ECOLI (P08622) Chaperone protein dnaJ (Heat shock protein J) (HSP40)| Length = 375 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 106 GRQRAARGADLRYNMELTLEEAVRGVTKEIRIP 138
>DNAJ_ECOL6 (Q8FLC5) Chaperone protein dnaJ| Length = 375 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 106 GRQRAARGADLRYNMELTLEEAVRGVTKEIRIP 138
>DNAJ_ECO57 (Q8XA65) Chaperone protein dnaJ| Length = 375 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 166 GAQKFSDHADLRFSLGACRPEEVKAVTLPIRLP 264 G Q+ + ADLR+++ E V+ VT IR+P Sbjct: 106 GRQRAARGADLRYNMELTLEEAVRGVTKEIRIP 138
>DNAE2_NOCFA (Q5Z1D1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1146 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -1 Query: 299 WLGAAGKARWKSGRRMGRV-TAFTSSGRHAPRLKRRSAWSLNFWAP 165 WL AG A +SG M R+ A + +A L R A+ L AP Sbjct: 335 WLAPAGGAHLRSGAEMARLFAACPDAVANAVALSRECAFDLRLIAP 380
>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2| (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3305 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +2 Query: 170 PRNSATTRTCASAWAHVGRKR*KP*PCPSASQISTSPCQPLPTNFSQY 313 P +A T T +WA CP+ S IS+SP +PL T + Y Sbjct: 2984 PACAARTATGPGSWATPTSTN-----CPTDSLISSSPLRPLRTTPAHY 3026 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,683,249 Number of Sequences: 219361 Number of extensions: 807453 Number of successful extensions: 2343 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2343 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
