ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 i... 42 1.0
2gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
3gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
4emb|AL049198.2|HS590K14 Human DNA sequence from clone RP4-590K14... 40 4.0
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
7gb|AC097472.2| Homo sapiens BAC clone RP11-75M18 from 4, complet... 40 4.0
8dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
9dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
11gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, comple... 40 4.0

>emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 in linkage group 4,
             complete sequence
          Length = 157921

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    aattttgttgagcagcatccc 82
             |||||||||||||||||||||
Sbjct: 17798 aattttgttgagcagcatccc 17818



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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tcccaccaattttgttgagc 74
             ||||||||||||||||||||
Sbjct: 76929 tcccaccaattttgttgagc 76910



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>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0028C22, complete sequence
          Length = 154228

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     caacttccaatatatgcata 44
              ||||||||||||||||||||
Sbjct: 127595 caacttccaatatatgcata 127614



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>emb|AL049198.2|HS590K14 Human DNA sequence from clone RP4-590K14 on chromosome 1q25.3-31.2
             Contains EST and GSSs, complete sequence
          Length = 41015

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   caaatgacacttgacactac 188
             ||||||||||||||||||||
Sbjct: 25621 caaatgacacttgacactac 25602



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       tcccaccaattttgttgagc 74
                ||||||||||||||||||||
Sbjct: 11290571 tcccaccaattttgttgagc 11290552



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 25       caacttccaatatatgcata 44
                ||||||||||||||||||||
Sbjct: 19800328 caacttccaatatatgcata 19800347



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>gb|AC097472.2| Homo sapiens BAC clone RP11-75M18 from 4, complete sequence
          Length = 146479

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  acgttgtgttcaggaagcac 149
            ||||||||||||||||||||
Sbjct: 4670 acgttgtgttcaggaagcac 4651



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>dbj|AP005735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0034B12
          Length = 124083

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    caacttccaatatatgcata 44
             ||||||||||||||||||||
Sbjct: 24768 caacttccaatatatgcata 24787



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>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0450E05
          Length = 176553

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     caacttccaatatatgcata 44
              ||||||||||||||||||||
Sbjct: 146014 caacttccaatatatgcata 146033



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 55       tcccaccaattttgttgagc 74
                ||||||||||||||||||||
Sbjct: 11369760 tcccaccaattttgttgagc 11369741



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>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence
          Length = 182809

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    actacaggtctgcagcacac 203
              ||||||||||||||||||||
Sbjct: 136534 actacaggtctgcagcacac 136515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,196,977
Number of Sequences: 3902068
Number of extensions: 2196977
Number of successful extensions: 42865
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42813
Number of HSP's gapped (non-prelim): 52
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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