>ATL1A_ARATH (P93823) RING-H2 finger protein ATL1A|
          Length = 381

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
 Frame = -1

Query: 440 EPIRRSMSMDFLPGDRGRKPPKED------HADVAGTSSSVAATPAGVGETSGRLRRLMS 279
           +PIRRS+SMD     +     +E+         VAG     +++  G    S  ++R   
Sbjct: 305 QPIRRSISMDSSVDRQLYLAVQEEISRRNRQIPVAGDGEDSSSSGGG---NSRVMKRCFF 361

Query: 278 SFGLGRSSR-STVLPVNLDP 222
           SFG  R+S+ S++LPV L+P
Sbjct: 362 SFGSSRTSKSSSILPVYLEP 381

>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein|
           0) (EP0)
          Length = 410

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 355 ATSAWSSFGGFRPRSPGKKSMDMERLMGSCTAMPC 459
           A+SAW  FG +RPRSP   S   +RL    T M C
Sbjct: 15  ASSAWGIFGFYRPRSP---SPPPQRLSLPLTVMDC 46

>HSLU_XANAC (Q8PPP7) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 455

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 392 GRKPPKEDHADVAGTSSSVAATPAGVGETSGRLRRLMSSFGLGRSSR 252
           G    +E   +VA  +S    TP G+ E   +LR++ S+ G G+S +
Sbjct: 177 GELDEREIELEVAVNASMDIMTPPGMEEMGQQLRQMFSNLGSGKSQK 223

>GCSP_PSEU2 (Q4ZXH2) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 954

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247 VLRELRPSPNDDIS--RRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           ++R LR   + D++  R   PL S T    AA+ + +P T  W+ FG   P +P ++S  
Sbjct: 486 LMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEM-IPVT--WAEFGNLHPFAPAEQSAG 542

Query: 421 MERLMGSCTAMPC 459
            ++L     AM C
Sbjct: 543 YQQLTDELEAMLC 555

>GCSP_PSESM (Q887L5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 954

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247 VLRELRPSPNDDIS--RRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           ++R LR   + D++  R   PL S T    AA+ + +P T  W+ FG   P +P ++S  
Sbjct: 486 LMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEM-IPVT--WAEFGNLHPFAPAEQSAG 542

Query: 421 MERLMGSCTAMPC 459
            ++L     AM C
Sbjct: 543 YQQLTDELEAMLC 555

>GCSP_PSE14 (Q48ME3) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 954

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247 VLRELRPSPNDDIS--RRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           ++R LR   + D++  R   PL S T    AA+ + +P T  W+ FG   P +P ++S  
Sbjct: 486 LMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEM-IPVT--WAEFGNLHPFAPAEQSTG 542

Query: 421 MERLMGSCTAMPC 459
            ++L     AM C
Sbjct: 543 YQQLTDELEAMLC 555

>GCSP1_PSEPF (Q3K7X5) Glycine dehydrogenase [decarboxylating] 1 (EC 1.4.4.2)|
           (Glycine decarboxylase 1) (Glycine cleavage system
           P-protein 1)
          Length = 950

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247 VLRELRPSPNDDIS--RRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           ++R LR   + D++  R   PL S T    AA+ + +P T  W+ FG   P +P ++S  
Sbjct: 484 LMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEM-IPVT--WAEFGALHPFAPAEQSAG 540

Query: 421 MERLMGSCTAMPC 459
            ++L     AM C
Sbjct: 541 YQQLTDELEAMLC 553

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 463 PSRASPCRSPSGAPCPWTSCRAIADGSRRRRTMPTW 356
           PSR+S   SP+ +P PW+     A+ SRR+R+  +W
Sbjct: 19  PSRSSWPASPTTSPPPWS--EPDAEISRRKRSSSSW 52

>VANX_ENTFC (Q06241) D-alanyl-D-alanine dipeptidase (EC 3.4.13.-) (D-Ala-D-Ala|
           dipeptidase) (Vancomycin B-type resistance protein vanX)
          Length = 202

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 118 RGGCMDGLLFCVDASNVQPVGDC*SFLDESCHHS 17
           RG  +D  L+ +D   + P+G    F+DE  HH+
Sbjct: 118 RGSAIDLTLYRLDTGELVPMGSRFDFMDERSHHA 151

>HSLU_XYLFA (Q9PD94) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 459

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 392 GRKPPKEDHADVAGTSSSVAATPAGVGETSGRLRRLMSSFGLGRSSR 252
           G    +E   DVA   S    TP G+ E   +LR++ S+ G G+S +
Sbjct: 182 GELEEREIELDVAVNVSMDIMTPPGMEEMGQQLRQMFSNIGGGKSQK 228

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 268  SPNDDISRRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKS 414
            +P +       PL  P P G+AAT +  P     S  GG  P SPG  S
Sbjct: 1521 TPTEQPPGAEAPLPGPPPTGMAATPVPTP-----SPAGGPDPTSPGSDS 1564

>GCSP1_PSEF5 (Q4K7Q8) Glycine dehydrogenase [decarboxylating] 1 (EC 1.4.4.2)|
           (Glycine decarboxylase 1) (Glycine cleavage system
           P-protein 1)
          Length = 951

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247 VLRELRPSPNDDIS--RRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           ++R LR   + D++  R   PL S T    AA+ + +P T  W+ FG   P +P ++S  
Sbjct: 483 LMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEM-IPIT--WAEFGALHPFAPAEQSAG 539

Query: 421 MERLMGSCTAMPC 459
            ++L     AM C
Sbjct: 540 YQQLTTELEAMLC 552

>HSLU_XANCP (Q8P552) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 455

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 392 GRKPPKEDHADVAGTSSSVAATPAGVGETSGRLRRLMSSFGLGRSSR 252
           G    +E   +VA  +S    TP G+ E   +LR++ S+ G G+S +
Sbjct: 177 GELDEREIELEVAVNASMDIMTPPGMEEMGQQLRQMFSNLGGGKSQK 223

>FRAT1_MOUSE (P70339) Proto-oncogene FRAT1 (Frequently rearranged in advanced|
           T-cell lymphomas) (Frat-1)
          Length = 274

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
 Frame = -3

Query: 402 GRSRTEAAEGGPCRRGW---------HQQQRGSHP 325
           G+  T     GPCRRGW          QQ+RGS P
Sbjct: 149 GKLSTPQPLSGPCRRGWLRNAAASRRLQQRRGSQP 183

>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4
          Length = 1203

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +1

Query: 223  GSRLTGSTVLRELRPSPNDDISRRNRPLVSPTPAGVAATLLLVPATS----AWSSFGGFR 390
            G+   G T    L P  +     R  P   P  +G   +LLL PA+S          G  
Sbjct: 1013 GASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTP 1072

Query: 391  PRSPGKKSMDMERLMGSCTAMP 456
            P +PG+ + D++ +  S  A+P
Sbjct: 1073 PLTPGRLTQDLKLISASQPALP 1094

>FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged in advanced|
           T-cell lymphomas) (Frat-1)
          Length = 279

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
 Frame = -3

Query: 405 AGRSRTEAAEGGPCRRGW---------HQQQRGSHP 325
           AG+        GPCRRGW          QQ+RGS P
Sbjct: 155 AGKQGIPQPLSGPCRRGWLRGAAASRRLQQRRGSQP 190

>HRBL_HUMAN (O95081) HIV-1 Rev-binding protein-like protein (Rev/Rex activation|
           domain-binding protein-related) (RAB-R)
          Length = 481

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 253 RELRPSPNDDISRRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           R  +P P+  + + +  L++       A   + PA +A+ +FGG  P   G  + D
Sbjct: 208 RSTQPPPHSSVKKASTDLLADIGGDPFAAPQMAPAFAAFPAFGGQTPSQGGFANFD 263

>IRS2A_XENLA (Q9DF49) Insulin receptor substrate 2-A (IRS-2-A) (Insulin receptor|
           substrate-unique) (Insulin receptor
           substrate-undetermined designation) (xIRS-u)
          Length = 1074

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = -1

Query: 437 PIRRSMSMDFLPGDRGRKPPKEDHADVAGTSSSVAATPAGVGETSGRLRRLMSSFGLGRS 258
           P  ++ S  F     G          V G+ S +      +G+  G  R + + F  G  
Sbjct: 346 PSAKNNSFRFRTSSEGEGTMTRPFRSVTGSLSHLNTARINLGKQEGAGRYVRAPFNSGYQ 405

Query: 257 SRSTVLPVNLDP 222
           SRS  LPV+  P
Sbjct: 406 SRSASLPVSHFP 417

>HXA11_HUMAN (P31270) Homeobox protein Hox-A11 (Hox-1I)|
          Length = 313

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 271 PNDDISRRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMDMER 429
           P D  + +  P  + T A  AA     PATS+  S GG   R     + + ER
Sbjct: 160 PGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKER 212

>GCSP1_PSEAE (Q9I137) Glycine dehydrogenase [decarboxylating] 1 (EC 1.4.4.2)|
           (Glycine decarboxylase 1) (Glycine cleavage system
           P-protein 1)
          Length = 959

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 247 VLRELRPSPNDDIS--RRNRPLVSPTPAGVAATLLLVPATSAWSSFGGFRPRSPGKKSMD 420
           ++R LR   + D++  R   PL S T    AA+ + +P T  W+ FG   P +P ++S  
Sbjct: 491 LMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEM-IPVT--WAEFGNLHPFAPAEQSEG 547

Query: 421 MERLMGSCTAMPC 459
             +L     AM C
Sbjct: 548 YRQLTDELEAMLC 560


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,872,399
Number of Sequences: 219361
Number of extensions: 1453831
Number of successful extensions: 4942
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)