ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38h01 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 108 bits (269), Expect = 1e-23 Identities = 50/55 (90%), Positives = 54/55 (98%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDGWLKDMPAVA 335 K+LDY+KIFDNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLD WLKDMPAVA Sbjct: 426 KTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 55.5 bits (132), Expect = 8e-08 Identities = 22/40 (55%), Positives = 34/40 (85%) Frame = -2 Query: 493 LDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGK 374 LD+K+I+ +M KPA++FDGR ++D E+L++IGF V +IGK Sbjct: 420 LDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 374 K LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 421 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 374 K LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 421 KELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 374 K LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 421 KELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 374 K LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 421 KELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 47.0 bits (110), Expect = 3e-05 Identities = 21/43 (48%), Positives = 31/43 (72%) Frame = -2 Query: 493 LDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLD 365 L+Y +I ++MQ PA +FDGR ++D + LREIGF ++IG D Sbjct: 428 LNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 42.7 bits (99), Expect = 5e-04 Identities = 18/39 (46%), Positives = 29/39 (74%) Frame = -2 Query: 490 DYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGK 374 D++KI N+ K VFDGRN++D EK++++GF Y +G+ Sbjct: 858 DWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFKYYGVGR 895
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 37.4 bits (85), Expect = 0.023 Identities = 15/44 (34%), Positives = 31/44 (70%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPL 368 K L++++I+D ++ P + D RN++D E +++IGF Y++G + Sbjct: 390 KELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGSKI 432
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 37.4 bits (85), Expect = 0.023 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = -2 Query: 490 DYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDGWLK 353 D++KI +M+ P V DGRN+ ++ E+GFI IG+P G K Sbjct: 405 DFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIGRPRAGHCK 449
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 35.4 bits (80), Expect = 0.086 Identities = 15/44 (34%), Positives = 30/44 (68%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPL 368 K L++++I+ N+ K + D RN++D E +++IGF Y++G + Sbjct: 392 KELNWQEIY-NLVKSPMIIDLRNILDNEVMKKIGFRYYAVGSQI 434
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid| X receptor-interacting protein 13) (RIP13) Length = 2453 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +2 Query: 284 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 412 D A+ P DV+ E +G VL+PP AD VD E +PE Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 33.5 bits (75), Expect = 0.33 Identities = 14/43 (32%), Positives = 28/43 (65%) Frame = -2 Query: 499 KSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKP 371 K ++ K+ +++P + DGRN+ E+++ G+I +SIG+P Sbjct: 391 KEMELVKVKTLLKQPVII-DGRNLFSLEEMQAAGYIYHSIGRP 432
>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)| Length = 302 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 275 APIDDAAGRQTRPADVESE-LGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAA 439 A D AA ++ PAD E E + + +E ++ LAD V+ E + E VDD AA Sbjct: 229 ADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDDEAA 284
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 30.4 bits (67), Expect = 2.8 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = +2 Query: 278 PIDDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVEDE 451 P D G T P D + DGG+V P DG DD P+ G DDVA +D Sbjct: 99 PKPDNGGDVTPPDDGGNVTPPDDGGNVTPPD-----DGGDDNVTPPDDSGDDDVAPPDDS 153 Query: 452 G 454 G Sbjct: 154 G 154
>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1449 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -2 Query: 490 DYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLD 365 DY +I +Q F+ NV D E+LRE+ +Y +GK +D Sbjct: 702 DYLEI-QPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742
>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)| Length = 564 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +2 Query: 269 PAAPIDDAAGRQTRPADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED 448 P + A+G + PA GG E E L + +DE + ELL DD +ED Sbjct: 200 PEERLSAASGPGSAPA------AGGGTGAEDDEEELLEDEEDEEEEEELLEDDDEELLED 253 Query: 449 EGRLL 463 + R L Sbjct: 254 DARAL 258
>Y4747_STRCO (O86788) Hypothetical UPF0079 protein SCO4747| Length = 148 Score = 29.3 bits (64), Expect = 6.2 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 314 ADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED--EGRLLHVVEDLL 484 A V LGDG ++ RL+ G+D+ DL + + D V + EG++ + ED L Sbjct: 53 ARVHPSLGDGPPLVHVDAYRLSGGLDEMEDLDLDVSLSDSVIVVEWGEGKVEELTEDRL 111
>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein| homolog) Length = 1320 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 345 PPSPNSLSTSAGLVCLPAASSIGAAGRQGKEG 250 PP PNS ++ G +PAA GA Q ++G Sbjct: 717 PPVPNSTVSARGQRSVPAAGKAGAPATQAQKG 748
>DDX58_MOUSE (Q6Q899) Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)| (DEAD-box protein 58) (Retinoic acid-inducible gene 1 protein) (RIG-1) (RIG-I) Length = 926 Score = 24.6 bits (52), Expect(2) = 9.6 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Frame = -3 Query: 96 CRSYNQTPRPP--VLSEEVFSPLYPMNF 19 C++ +Q P PP S + SPL P N+ Sbjct: 220 CQNLSQNPGPPSEASSNNLHSPLKPRNY 247 Score = 22.3 bits (46), Expect(2) = 9.6 Identities = 16/66 (24%), Positives = 29/66 (43%) Frame = -2 Query: 355 KDMPAVA*FALHVGRPRLSAGGVVDRGCRKAGEGRKEDEXXXXXXXXPFFIVCVLQEKHQ 176 ++ P V AL + S +VD+G ++A ED+ F +QE+ + Sbjct: 165 ENWPKVLQLALEKDNSKFSELWIVDKGFKRAESKADEDDGAEASSIQIF-----IQEEPE 219 Query: 175 QQFLAR 158 Q L++ Sbjct: 220 CQNLSQ 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,604,887 Number of Sequences: 219361 Number of extensions: 1357533 Number of successful extensions: 4501 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4496 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
