ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104158.1| Zea mays PCO135695 mRNA sequence 264 2e-67
2gb|AY789530.1| Oryza sativa (indica cultivar-group) syntaxin rel... 248 1e-62
3ref|NM_187897.1| Oryza sativa (japonica cultivar-group), Ozsa833... 248 1e-62
4dbj|AK068204.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 1e-62
5gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 135 1e-28
6dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
8dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
9gb|AC087771.3|AC087771 Genomic Sequence for Medicago truncatula,... 88 3e-14
10gb|AF532627.1| Glycine max syntaxin mRNA, complete cds 86 1e-13
11gb|AC174378.9| Medicago truncatula clone mth2-57m5, complete seq... 56 1e-04
12gb|AC150505.12| Medicago truncatula clone mth2-99l2, complete se... 56 1e-04
13gb|AC150647.13| Medicago truncatula clone mth2-65p21, complete s... 56 1e-04
14gb|DQ200364.1| Solanum tuberosum clone 054F04 syntaxin-like prot... 46 0.11
15gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Canc... 42 1.7
16gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell... 42 1.7
17dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 42 1.7
18ref|NM_124057.2| Arabidopsis thaliana VAM3; t-SNARE AT5G46860 (V... 40 6.6
19gb|DQ212950.1| Staphylococcus aureus strain ATCC 6538 16S riboso... 40 6.6
20gb|AC132948.3| Mus musculus BAC clone RP24-467P6 from chromosome... 40 6.6
21gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence 40 6.6
22gb|DP000008.1| Bos taurus target 1 genomic scaffold 40 6.6
23gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, comp... 40 6.6
24gb|AC074347.8| Homo sapiens BAC clone RP11-646H18 from 7, comple... 40 6.6
25gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete s... 40 6.6
26emb|AL137009.8| Human DNA sequence from clone RP3-370O5 on chrom... 40 6.6
27emb|AL049613.2|HS231N13 Human DNA sequence from clone RP1-231N13... 40 6.6
28emb|AL645685.12| Mouse DNA sequence from clone RP23-198I4 on chr... 40 6.6
29gb|AY133666.1| Arabidopsis thaliana AT4g17730/dl4901w mRNA, comp... 40 6.6
30gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete se... 40 6.6
31gb|AC116345.2| Homo sapiens chromosome 5 clone RP11-232L2, compl... 40 6.6
32gb|AY072015.1| Arabidopsis thaliana AT4g17730/dl4901w mRNA, comp... 40 6.6
33gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome... 40 6.6
34gb|AC020942.6| Homo sapiens chromosome 5 clone CTD-2361L15, comp... 40 6.6
35gb|AF385695.1|AF385695 Arabidopsis thaliana AT4g17730/dl4901w mR... 40 6.6
36ref|NM_001026627.2| Caenorhabditis elegans Y6B3A.1a (Y6B3A.1) mR... 40 6.6
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
38gb|AC026416.4|AC026416 Homo sapiens chromosome 5 clone CTD-2048J... 40 6.6
39gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromos... 40 6.6
40gb|AC005280.3|AC005280 Homo sapiens PAC clone RP1-240K6 from 14,... 40 6.6
41gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complet... 40 6.6
42gb|AY085121.1| Arabidopsis thaliana clone 13184 mRNA, complete s... 40 6.6
43dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
44dbj|AK101097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
45dbj|AK100646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
46emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in l... 40 6.6
47emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, compl... 40 6.6
48gb|U88045.1|ATU88045 Arabidopsis thaliana syntaxin related prote... 40 6.6
49gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome... 40 6.6
50gb|AC158367.3| Gallus gallus BAC clone CH261-50N13 from chromoso... 40 6.6
51gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complet... 40 6.6 
>gb|AY104158.1| Zea mays PCO135695 mRNA sequence
          Length = 932

 Score =  264 bits (133), Expect = 2e-67
 Identities = 235/269 (87%)
 Strand = Plus / Minus

                                                                       
Query: 214 gctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacaggcat 273
           |||||||| |||||||||||||||||||| ||||| ||||| |||||||  |||| ||||
Sbjct: 793 gctgcaagtactattatcactatgagcaggaccacgccgaagataaccagtaacaagcat 734

                                                                       
Query: 274 atcagagaagagtttgacttttgggttttagcagcttttgaaagctggccttttgcttgt 333
           ||||| |||||||| ||||| || || || ||||||||||||||||| ||||| || || 
Sbjct: 733 atcagcgaagagttcgacttctgagtcttggcagcttttgaaagctgacctttagcctgc 674

                                                                       
Query: 334 gcagtcgcagcaacagaattgtcgagatgattctcaatgtcatcgatcattgctccttga 393
           | ||||||  |||||| ||| || | |||    ||||||||||| |||||||||||||||
Sbjct: 673 gaagtcgctacaacagcattctctatatgggaatcaatgtcatctatcattgctccttga 614

                                                                       
Query: 394 tcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttggtattga 453
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct: 613 tcatggactagcacagcaagatctttgaagatttcatttacttcagtgatttggtgttga 554

                                        
Query: 454 atctcttgtattccctggtccctttcctc 482
           ||||||||||||||||| ||||| |||||
Sbjct: 553 atctcttgtattccctgatccctctcctc 525
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>gb|AY789530.1| Oryza sativa (indica cultivar-group) syntaxin related protein
           (Vam3) mRNA, complete cds
          Length = 1284

 Score =  248 bits (125), Expect = 1e-62
 Identities = 236/273 (86%)
 Strand = Plus / Minus

                                                                       
Query: 210 ctaggctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacag 269
           ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| 
Sbjct: 918 ctaggctgcgaggacgattatcactatgagcaggaccaccccgaatataaccagcaacaa 859

                                                                       
Query: 270 gcatatcagagaagagtttgacttttgggttttagcagcttttgaaagctggccttttgc 329
           ||||||||| |||||||| ||||| || ||||||||||| || || || |||||||||||
Sbjct: 858 gcatatcagcgaagagttcgacttctgagttttagcagccttagagagttggccttttgc 799

                                                                       
Query: 330 ttgtgcagtcgcagcaacagaattgtcgagatgattctcaatgtcatcgatcattgctcc 389
           ||||| ||||||   ||||| ||| |||| |||  | ||||||||||| ||||||  |||
Sbjct: 798 ttgtgtagtcgctataacagcattctcgatatgggtgtcaatgtcatcaatcatttgtcc 739

                                                                       
Query: 390 ttgatcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttggta 449
           |||||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||| 
Sbjct: 738 ttgatcgtggactagaacagcaagatctttgaagatttcatttacttcagtaatttggtg 679

                                            
Query: 450 ttgaatctcttgtattccctggtccctttcctc 482
            ||||| |||||||||||||| ||||| |||||
Sbjct: 678 ctgaatttcttgtattccctgatccctctcctc 646
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>ref|NM_187897.1| Oryza sativa (japonica cultivar-group), Ozsa8339 predicted mRNA
          Length = 843

 Score =  248 bits (125), Expect = 1e-62
 Identities = 236/273 (86%)
 Strand = Plus / Minus

                                                                       
Query: 210 ctaggctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacag 269
           ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| 
Sbjct: 843 ctaggctgcgaggacgattatcactatgagcaggaccaccccgaatataaccagcaacaa 784

                                                                       
Query: 270 gcatatcagagaagagtttgacttttgggttttagcagcttttgaaagctggccttttgc 329
           ||||||||| |||||||| ||||| || ||||||||||| || || || |||||||||||
Sbjct: 783 gcatatcagcgaagagttcgacttctgagttttagcagccttagagagttggccttttgc 724

                                                                       
Query: 330 ttgtgcagtcgcagcaacagaattgtcgagatgattctcaatgtcatcgatcattgctcc 389
           ||||| ||||||   ||||| ||| |||| |||  | ||||||||||| ||||||  |||
Sbjct: 723 ttgtgtagtcgctataacagcattctcgatatgggtgtcaatgtcatcaatcatttgtcc 664

                                                                       
Query: 390 ttgatcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttggta 449
           |||||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||| 
Sbjct: 663 ttgatcgtggactagaacagcaagatctttgaagatttcatttacttcagtaatttggtg 604

                                            
Query: 450 ttgaatctcttgtattccctggtccctttcctc 482
            ||||| |||||||||||||| ||||| |||||
Sbjct: 603 ctgaatttcttgtattccctgatccctctcctc 571
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>dbj|AK068204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136O09, full
            insert sequence
          Length = 1389

 Score =  248 bits (125), Expect = 1e-62
 Identities = 236/273 (86%)
 Strand = Plus / Minus

                                                                        
Query: 210  ctaggctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacag 269
            ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| 
Sbjct: 1024 ctaggctgcgaggacgattatcactatgagcaggaccaccccgaatataaccagcaacaa 965

                                                                        
Query: 270  gcatatcagagaagagtttgacttttgggttttagcagcttttgaaagctggccttttgc 329
            ||||||||| |||||||| ||||| || ||||||||||| || || || |||||||||||
Sbjct: 964  gcatatcagcgaagagttcgacttctgagttttagcagccttagagagttggccttttgc 905

                                                                        
Query: 330  ttgtgcagtcgcagcaacagaattgtcgagatgattctcaatgtcatcgatcattgctcc 389
            ||||| ||||||   ||||| ||| |||| |||  | ||||||||||| ||||||  |||
Sbjct: 904  ttgtgtagtcgctataacagcattctcgatatgggtgtcaatgtcatcaatcatttgtcc 845

                                                                        
Query: 390  ttgatcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttggta 449
            |||||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||| 
Sbjct: 844  ttgatcgtggactagaacagcaagatctttgaagatttcatttacttcagtaatttggtg 785

                                             
Query: 450  ttgaatctcttgtattccctggtccctttcctc 482
             ||||| |||||||||||||| ||||| |||||
Sbjct: 784  ctgaatttcttgtattccctgatccctctcctc 752
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score =  135 bits (68), Expect = 1e-28
 Identities = 95/104 (91%)
 Strand = Plus / Minus

                                                                          
Query: 379    atcattgctccttgatcatggactagcacagcaagatctttgaagatctcgtttacttca 438
              ||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||
Sbjct: 115730 atcattgctccttgaccatgaactagcacagcaagatctttgaaaatttcgtttacttca 115671

                                                          
Query: 439    gtgatttggtattgaatctcttgtattccctggtccctttcctc 482
              || |||||||  |||||||||||||||||||| ||||| |||||
Sbjct: 115670 gtaatttggtgctgaatctcttgtattccctgatccctctcctc 115627



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                            
Query: 211    taggctgcaaggactattatcactatgagc 240
              ||||||||||||||||||||||||||||||
Sbjct: 116061 taggctgcaaggactattatcactatgagc 116032



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 299    ttttagcagcttttgaaagctggccttt 326
              |||||||||| ||||| |||||||||||
Sbjct: 115914 ttttagcagcctttgagagctggccttt 115887
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>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0711E10
          Length = 157903

 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                         
Query: 387   tccttgatcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttg 446
             ||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct: 50411 tccttgatcgtggactagaacagcaagatctttgaagatttcatttacttcagtaatttg 50470

                                                 
Query: 447   gtattgaatctcttgtattccctggtccctttcctc 482
             ||  ||||| |||||||||||||| ||||| |||||
Sbjct: 50471 gtgctgaatttcttgtattccctgatccctctcctc 50506



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                         
Query: 210   ctaggctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacag 269
             ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| 
Sbjct: 50022 ctaggctgcgaggacgattatcactatgagcaggaccaccccgaatataaccagcaacaa 50081

                    
Query: 270   gcatatc 276
             |||||||
Sbjct: 50082 gcatatc 50088



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 280   gaagagtttgacttttgggttttagcagcttttgaaagctggccttttgcttgtgcagtc 339
             |||||||| ||||| || ||||||||||| || || || |||||||||||||||| ||||
Sbjct: 50185 gaagagttcgacttctgagttttagcagccttagagagttggccttttgcttgtgtagtc 50244

               
Query: 340   gc 341
             ||
Sbjct: 50245 gc 50246
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                           
Query: 387     tccttgatcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttg 446
               ||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct: 8475258 tccttgatcgtggactagaacagcaagatctttgaagatttcatttacttcagtaatttg 8475317

                                                   
Query: 447     gtattgaatctcttgtattccctggtccctttcctc 482
               ||  ||||| |||||||||||||| ||||| |||||
Sbjct: 8475318 gtgctgaatttcttgtattccctgatccctctcctc 8475353



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                           
Query: 210     ctaggctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacag 269
               ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| 
Sbjct: 8474869 ctaggctgcgaggacgattatcactatgagcaggaccaccccgaatataaccagcaacaa 8474928

                      
Query: 270     gcatatc 276
               |||||||
Sbjct: 8474929 gcatatc 8474935



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                           
Query: 280     gaagagtttgacttttgggttttagcagcttttgaaagctggccttttgcttgtgcagtc 339
               |||||||| ||||| || ||||||||||| || || || |||||||||||||||| ||||
Sbjct: 8475032 gaagagttcgacttctgagttttagcagccttagagagttggccttttgcttgtgtagtc 8475091

                 
Query: 340     gc 341
               ||
Sbjct: 8475092 gc 8475093
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>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0705D01
          Length = 147174

 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                         
Query: 387   tccttgatcatggactagcacagcaagatctttgaagatctcgtttacttcagtgatttg 446
             ||||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct: 90213 tccttgatcgtggactagaacagcaagatctttgaagatttcatttacttcagtaatttg 90272

                                                 
Query: 447   gtattgaatctcttgtattccctggtccctttcctc 482
             ||  ||||| |||||||||||||| ||||| |||||
Sbjct: 90273 gtgctgaatttcttgtattccctgatccctctcctc 90308



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                         
Query: 210   ctaggctgcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacag 269
             ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| 
Sbjct: 89824 ctaggctgcgaggacgattatcactatgagcaggaccaccccgaatataaccagcaacaa 89883

                    
Query: 270   gcatatc 276
             |||||||
Sbjct: 89884 gcatatc 89890



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 280   gaagagtttgacttttgggttttagcagcttttgaaagctggccttttgcttgtgcagtc 339
             |||||||| ||||| || ||||||||||| || || || |||||||||||||||| ||||
Sbjct: 89987 gaagagttcgacttctgagttttagcagccttagagagttggccttttgcttgtgtagtc 90046

                                                   
Query: 340   gcagcaacagaattgtcgagatgattctcaatgtcatc 377
             ||   ||||| ||| |||| |||  | |||||||||||
Sbjct: 90047 gctataacagcattctcgatatgggtgtcaatgtcatc 90084
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>gb|AC087771.3|AC087771 Genomic Sequence for Medicago truncatula, clone 8D15, complete sequence
          Length = 69590

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 379   atcattgctccttgatcatggactagcacagcaagatctttgaagatctcgtttacttca 438
             |||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 11495 atcattgctccttgctcatgaacaagcacagcaagatctttgaagatctcatttacttca 11436
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>gb|AF532627.1| Glycine max syntaxin mRNA, complete cds
          Length = 1214

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 750 caatatcatcaatcatggctccttgctcatggacaagcacagcaagatctttgaagatct 691

                                                                  
Query: 428 cgtttacttcagtgatttggtattgaatctcttgtattccctggtccctttcctc 482
           | || ||||||   ||||| | ||| || ||||| || || || |||||||||||
Sbjct: 690 cattaacttcaccaatttgctgttgtatttcttgaatgccttgctccctttcctc 636



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 97/122 (79%)
 Strand = Plus / Minus

                                                                       
Query: 217 gcaaggactattatcactatgagcagcaccaccccgaaaataaccatcaacaggcatatc 276
           ||||| ||||| ||||| ||||| ||||| | ||| ||||| ||||  | || |||| ||
Sbjct: 901 gcaagaactatgatcacgatgagaagcacaatcccaaaaatcaccaaaagcaagcatgtc 842

                                                                       
Query: 277 agagaagagtttgacttttgggttttagcagcttttgaaagctggccttttgcttgtgca 336
           | ||| || |||||  |||||||||| | |||||||| ||| ||   |||||||||||||
Sbjct: 841 aaagaggaatttgatctttgggtttttgaagcttttgcaagttgagattttgcttgtgca 782

             
Query: 337 gt 338
           ||
Sbjct: 781 gt 780
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>gb|AC174378.9| Medicago truncatula clone mth2-57m5, complete sequence
          Length = 126476

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 387   tccttgatcatggactagcacagcaagatctttgaa 422
             |||||| |||||||| ||||||||||||||||||||
Sbjct: 47287 tccttgttcatggacaagcacagcaagatctttgaa 47322
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>gb|AC150505.12| Medicago truncatula clone mth2-99l2, complete sequence
          Length = 111277

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 387   tccttgatcatggactagcacagcaagatctttgaa 422
             |||||| |||||||| ||||||||||||||||||||
Sbjct: 20685 tccttgttcatggacaagcacagcaagatctttgaa 20650
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>gb|AC150647.13| Medicago truncatula clone mth2-65p21, complete sequence
          Length = 105458

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 387   tccttgatcatggactagcacagcaagatctttgaa 422
             |||||| |||||||| ||||||||||||||||||||
Sbjct: 85468 tccttgttcatggacaagcacagcaagatctttgaa 85433
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>gb|DQ200364.1| Solanum tuberosum clone 054F04 syntaxin-like protein mRNA, complete
           cds
          Length = 1351

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 95/119 (79%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| ||||| |||||||| || || || ||||||||||| || ||||| || |
Sbjct: 852 caatttcatcaatcatagctccttgctcgtgaacaagcacagcaaggtccttgaaaattt 793

                                                                      
Query: 428 cgtttacttcagtgatttggtattgaatctcttgtattccctggtccctttcctcgatg 486
           | || ||||||   ||||| |  || || |||||||||||||| || ||||| ||||||
Sbjct: 792 cattcacttcaccaatttgttgctgtatttcttgtattccctgctctctttcttcgatg 734
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>gb|AC092945.6| Homo sapiens 12 BAC RP11-290O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 146969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   gcaaaataaaattatgaagga 156
             |||||||||||||||||||||
Sbjct: 80548 gcaaaataaaattatgaagga 80528
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>gb|AC016144.13|AC016144 Homo sapiens 12 BAC RP11-367O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 178453

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 265   aacaggcatatcagagaagag 285
             |||||||||||||||||||||
Sbjct: 78173 aacaggcatatcagagaagag 78193
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 130     tgcacagcaaaataaaattat 150
               |||||||||||||||||||||
Sbjct: 1202305 tgcacagcaaaataaaattat 1202325
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>ref|NM_124057.2| Arabidopsis thaliana VAM3; t-SNARE AT5G46860 (VAM3) mRNA, complete
           cds
          Length = 1300

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| |||||  |||||||||| |  || || || |||||||||||||| ||||
Sbjct: 821 caatatcatctatcatgactccttgatcgttaaccagaaccgcaagatctttgaatatct 762

               
Query: 428 cgtt 431
           ||||
Sbjct: 761 cgtt 758
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>gb|DQ212950.1| Staphylococcus aureus strain ATCC 6538 16S ribosomal RNA gene,
           partial sequence
          Length = 323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 tcactatgagcagcaccacc 249
           ||||||||||||||||||||
Sbjct: 45  tcactatgagcagcaccacc 26
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>gb|AC132948.3| Mus musculus BAC clone RP24-467P6 from chromosome 8, complete sequence
          Length = 166801

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agcaaaataaaattatgaag 154
             ||||||||||||||||||||
Sbjct: 34066 agcaaaataaaattatgaag 34047
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>gb|AC091252.3| Bos taurus clone RP42-324C24, complete sequence
          Length = 183383

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 126    tgactgcacagcaaaataaaattatgaa 153
              ||||||||||| |||| |||||||||||
Sbjct: 103377 tgactgcacaggaaaaaaaaattatgaa 103404
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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 126     tgactgcacagcaaaataaaattatgaa 153
               ||||||||||| |||| |||||||||||
Sbjct: 1623593 tgactgcacaggaaaaaaaaattatgaa 1623620
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>gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, complete sequence
          Length = 151195

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ataaaattatgaaggaattt 160
             ||||||||||||||||||||
Sbjct: 72663 ataaaattatgaaggaattt 72682
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>gb|AC074347.8| Homo sapiens BAC clone RP11-646H18 from 7, complete sequence
          Length = 133691

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   ataaaattatgaaggaattt 160
             ||||||||||||||||||||
Sbjct: 20356 ataaaattatgaaggaattt 20337
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>gb|AC144931.29| Medicago truncatula clone mth2-22b18, complete sequence
          Length = 122819

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   cacagcaaaataaaattatg 151
             ||||||||||||||||||||
Sbjct: 96344 cacagcaaaataaaattatg 96325
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>emb|AL137009.8| Human DNA sequence from clone RP3-370O5 on chromosome 6 Contains the
            5' end of a novel gene containing FLJ13942 and a CpG
            island, complete sequence
          Length = 113254

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  cagagaagagtttgactttt 295
            ||||||||||||||||||||
Sbjct: 8103 cagagaagagtttgactttt 8084
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>emb|AL049613.2|HS231N13 Human DNA sequence from clone RP1-231N13 on chromosome 6q22, complete
             sequence
          Length = 120000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ctgcacagcaaaataaaatt 148
             ||||||||||||||||||||
Sbjct: 49254 ctgcacagcaaaataaaatt 49273
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>emb|AL645685.12| Mouse DNA sequence from clone RP23-198I4 on chromosome 1 Contains a
              ribosomal protein S13 (Rps13) pseudogene, a ribosomal
              protein S27 (Rps27) pseudogene a novel genes and the 3' end
              of a novel gene, complete sequence
          Length = 218950

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    attccctggtccctttcctc 482
              ||||||||||||||||||||
Sbjct: 113395 attccctggtccctttcctc 113376
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>gb|AY133666.1| Arabidopsis thaliana AT4g17730/dl4901w mRNA, complete cds
          Length = 807

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| |||||  |||||||||| |  || || || |||||||||||||| ||||
Sbjct: 649 caatatcatctatcatgactccttgatcgttaaccagaaccgcaagatctttgaatatct 590

               
Query: 428 cgtt 431
           ||||
Sbjct: 589 cgtt 586
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>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
          Length = 151594

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   cacagcaaaataaaattatg 151
             ||||||||||||||||||||
Sbjct: 55251 cacagcaaaataaaattatg 55270
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>gb|AC116345.2| Homo sapiens chromosome 5 clone RP11-232L2, complete sequence
          Length = 161470

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   acttttgggttttagcagcttttg 313
             |||||| |||||||||||||||||
Sbjct: 50201 actttttggttttagcagcttttg 50178
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>gb|AY072015.1| Arabidopsis thaliana AT4g17730/dl4901w mRNA, complete cds
          Length = 1251

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| |||||  |||||||||| |  || || || |||||||||||||| ||||
Sbjct: 805 caatatcatctatcatgactccttgatcgttaaccagaaccgcaagatctttgaatatct 746

               
Query: 428 cgtt 431
           ||||
Sbjct: 745 cgtt 742
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>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence
          Length = 212654

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   agcaaaataaaattatgaag 154
             ||||||||||||||||||||
Sbjct: 98030 agcaaaataaaattatgaag 98011
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>gb|AC020942.6| Homo sapiens chromosome 5 clone CTD-2361L15, complete sequence
          Length = 104995

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   acttttgggttttagcagcttttg 313
             |||||| |||||||||||||||||
Sbjct: 82379 actttttggttttagcagcttttg 82356
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>gb|AF385695.1|AF385695 Arabidopsis thaliana AT4g17730/dl4901w mRNA, complete cds
          Length = 1251

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| |||||  |||||||||| |  || || || |||||||||||||| ||||
Sbjct: 799 caatatcatctatcatgactccttgatcgttaaccagaaccgcaagatctttgaatatct 740

               
Query: 428 cgtt 431
           ||||
Sbjct: 739 cgtt 736
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>ref|NM_001026627.2| Caenorhabditis elegans Y6B3A.1a (Y6B3A.1) mRNA, complete cds
          Length = 5249

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  tttgaagatctcgtttactt 436
            ||||||||||||||||||||
Sbjct: 4336 tttgaagatctcgtttactt 4317
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 325     tttgcttgtgcagtcgcagc 344
               ||||||||||||||||||||
Sbjct: 2834581 tttgcttgtgcagtcgcagc 2834600
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>gb|AC026416.4|AC026416 Homo sapiens chromosome 5 clone CTD-2048J22, complete sequence
          Length = 104995

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   acttttgggttttagcagcttttg 313
             |||||| |||||||||||||||||
Sbjct: 82379 actttttggttttagcagcttttg 82356
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>gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromosome 7, complete
             sequence
          Length = 169801

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   ataaaattatgaaggaattt 160
             ||||||||||||||||||||
Sbjct: 62520 ataaaattatgaaggaattt 62539
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>gb|AC005280.3|AC005280 Homo sapiens PAC clone RP1-240K6 from 14, complete sequence
          Length = 137033

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    cattgctccttgatcatgga 400
              ||||||||||||||||||||
Sbjct: 114683 cattgctccttgatcatgga 114702
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>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence
          Length = 151297

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   cagagaagagtttgactttt 295
             ||||||||||||||||||||
Sbjct: 79636 cagagaagagtttgactttt 79617
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>gb|AY085121.1| Arabidopsis thaliana clone 13184 mRNA, complete sequence
          Length = 1221

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| |||||  |||||||||| |  || || || |||||||||||||| ||||
Sbjct: 821 caatatcatctatcatgactccttgatcgttaaccagaaccgcaagatctttgaatatct 762

               
Query: 428 cgtt 431
           ||||
Sbjct: 761 cgtt 758
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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   tttgcttgtgcagtcgcagc 344
             ||||||||||||||||||||
Sbjct: 78062 tttgcttgtgcagtcgcagc 78081
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>dbj|AK101097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024O05, full
            insert sequence
          Length = 2808

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  tttgcttgtgcagtcgcagc 344
            ||||||||||||||||||||
Sbjct: 2104 tttgcttgtgcagtcgcagc 2123
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>dbj|AK100646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110L03, full
            insert sequence
          Length = 2604

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  tttgcttgtgcagtcgcagc 344
            ||||||||||||||||||||
Sbjct: 1900 tttgcttgtgcagtcgcagc 1919
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>emb|BX537133.3| Zebrafish DNA sequence from clone DKEY-90M5 in linkage group 20, complete
              sequence
          Length = 249791

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    acagcaaaataaaattatga 152
              ||||||||||||||||||||
Sbjct: 104862 acagcaaaataaaattatga 104881
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>emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, complete sequence
          Length = 123091

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    tttgaagatctcgtttactt 436
              ||||||||||||||||||||
Sbjct: 114430 tttgaagatctcgtttactt 114449
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>gb|U88045.1|ATU88045 Arabidopsis thaliana syntaxin related protein AtVam3p (AtVAM3)
           mRNA, complete cds
          Length = 1183

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 368 caatgtcatcgatcattgctccttgatcatggactagcacagcaagatctttgaagatct 427
           |||| ||||| |||||  |||||||||| |  || || || |||||||||||||| ||||
Sbjct: 785 caatatcatctatcatgactccttgatcgttaaccagaaccgcaagatctttgaatatct 726

               
Query: 428 cgtt 431
           ||||
Sbjct: 725 cgtt 722
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>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete
             sequence
          Length = 231341

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   taagcatgagcagattttgg 186
             ||||||||||||||||||||
Sbjct: 27678 taagcatgagcagattttgg 27697
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>gb|AC158367.3| Gallus gallus BAC clone CH261-50N13 from chromosome unknown, complete
              sequence
          Length = 230079

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    taagcatgagcagattttgg 186
              ||||||||||||||||||||
Sbjct: 139846 taagcatgagcagattttgg 139865
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>gb|AC149611.6| Mus musculus BAC clone RP23-157P4 from 7, complete sequence
          Length = 217353

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    caaaataaaattatgaagga 156
              ||||||||||||||||||||
Sbjct: 125664 caaaataaaattatgaagga 125683


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,630,052
Number of Sequences: 3902068
Number of extensions: 4630052
Number of successful extensions: 94981
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94791
Number of HSP's gapped (non-prelim): 189
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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