ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_639573.1| Dictyostelium discoideum hypothetical protein (... 46 0.096
2ref|XM_639494.1| Dictyostelium discoideum hypothetical protein (... 46 0.096
3gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214... 46 0.096
4gb|AY193643.1| Lactuca saligna clone LC13 resistance protein RGC... 46 0.096
5gb|AY193505.1| Lactuca sativa clone TC11 resistance protein RGC2... 46 0.096
6ref|XM_716597.1| Candida albicans SC5314 hypothetical protein (C... 44 0.38
7gb|AY193670.1| Lactuca serriola clone RAB14 resistance protein R... 44 0.38
8gb|AY193575.1| Lactuca saligna clone LB9 resistance protein RGC2... 44 0.38
9gb|AY193559.1| Lactuca sativa clone TM2 resistance protein RGC2 ... 44 0.38
10gb|AY193531.1| Lactuca sativa clone TDAC resistance protein cand... 44 0.38
11gb|AF113957.1|LSRGC2S3 Lactuca sativa resistance protein candida... 44 0.38
12ref|XM_716477.1| Candida albicans SC5314 hypothetical protein (C... 42 1.5
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP005464.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16gb|AF047976.1| Arabidopsis thaliana putative ethylene receptor (... 40 5.9
17ref|NM_100312.2| Arabidopsis thaliana ERS2 (ETHYLENE RESPONSE SE... 40 5.9
18gb|AY800560.1| Arabidopsis thaliana clone H0000001114 hypothetic... 40 5.9
19gb|AC102355.13| Mus musculus chromosome 5, clone RP23-120C8, com... 40 5.9
20gb|AC005714.11| Drosophila melanogaster clone BACR48M13, complet... 40 5.9
21ref|XM_715638.1| Candida albicans SC5314 hypothetical protein (C... 40 5.9
22ref|XM_715510.1| Candida albicans SC5314 hypothetical protein (C... 40 5.9
23gb|AY339821.1| Actinidia deliciosa sucrose synthase (SusA) mRNA,... 40 5.9
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
25emb|CR774185.17| Zebrafish DNA sequence from clone CH211-237H18 ... 40 5.9
26gb|AC106738.3| Homo sapiens chromosome 16 clone CTD-3032H12, com... 40 5.9
27gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom... 40 5.9
28gb|AC146566.7| Medicago truncatula clone mth2-71p5, complete seq... 40 5.9
29emb|AL133270.24| Human DNA sequence from clone RP4-810F7 on chro... 40 5.9
30emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in ... 40 5.9
31gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 5.9
32gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete... 40 5.9
33gb|AC008349.2|AC008349 Drosophila melanogaster, chromosome 2R, r... 40 5.9
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
36dbj|AB190366.1| Pyrus pyrifolia PpGAL5 mRNA for beta-D-galactosi... 40 5.9
37gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana... 40 5.9
38gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis tha... 40 5.9
39gb|AE003457.4| Drosophila melanogaster chromosome 2R, section 65... 40 5.9
40emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
41dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 5.9 
>ref|XM_639573.1| Dictyostelium discoideum hypothetical protein (DDB0217198), partial
           mRNA
          Length = 1446

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 186 aacaatcaactactactactact 208
           |||||||||||||||||||||||
Sbjct: 551 aacaatcaactactactactact 573
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>ref|XM_639494.1| Dictyostelium discoideum hypothetical protein (DDB0203344), partial
           mRNA
          Length = 1446

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 186 aacaatcaactactactactact 208
           |||||||||||||||||||||||
Sbjct: 551 aacaatcaactactactactact 573
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>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4,
             complete sequence
          Length = 132254

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 186   aacaatcaactactactactact 208
             |||||||||||||||||||||||
Sbjct: 28281 aacaatcaactactactactact 28259
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>gb|AY193643.1| Lactuca saligna clone LC13 resistance protein RGC2-like gene, partial
            sequence
          Length = 1447

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 193  aactactactactactcttttca 215
            |||||||||||||||||||||||
Sbjct: 1054 aactactactactactcttttca 1076
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>gb|AY193505.1| Lactuca sativa clone TC11 resistance protein RGC2 (RGC2) gene,
            partial cds
          Length = 1641

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 193  aactactactactactcttttca 215
            |||||||||||||||||||||||
Sbjct: 1248 aactactactactactcttttca 1270
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>ref|XM_716597.1| Candida albicans SC5314 hypothetical protein (CaO19_1611), mRNA
          Length = 933

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 180 acaatcaacaatcaactactactactactc 209
           |||| |||||||| ||||||||||||||||
Sbjct: 83  acaaacaacaatctactactactactactc 112
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>gb|AY193670.1| Lactuca serriola clone RAB14 resistance protein RGC2-like gene,
            partial sequence
          Length = 1579

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  actactactactactcttttca 215
            ||||||||||||||||||||||
Sbjct: 1187 actactactactactcttttca 1208
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>gb|AY193575.1| Lactuca saligna clone LB9 resistance protein RGC2 (RGC2) gene,
            partial cds
          Length = 1596

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  actactactactactcttttca 215
            ||||||||||||||||||||||
Sbjct: 1204 actactactactactcttttca 1225
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>gb|AY193559.1| Lactuca sativa clone TM2 resistance protein RGC2 (RGC2) gene, partial
            cds
          Length = 1628

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  actactactactactcttttca 215
            ||||||||||||||||||||||
Sbjct: 1236 actactactactactcttttca 1257
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>gb|AY193531.1| Lactuca sativa clone TDAC resistance protein candidate RGC2 (RGC2)
            gene, partial cds
          Length = 3267

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  actactactactactcttttca 215
            ||||||||||||||||||||||
Sbjct: 2905 actactactactactcttttca 2926
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>gb|AF113957.1|LSRGC2S3 Lactuca sativa resistance protein candidate RGC2S (RGC2S) gene,
            complete cds
          Length = 6300

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  actactactactactcttttca 215
            ||||||||||||||||||||||
Sbjct: 5353 actactactactactcttttca 5374
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>ref|XM_716477.1| Candida albicans SC5314 hypothetical protein (CaO19_9179), mRNA
          Length = 963

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 180 acaatcaacaatcaactactactactact 208
           |||| |||||||| |||||||||||||||
Sbjct: 83  acaaacaacaatctactactactactact 111
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 194      actactactactactcttttc 214
                |||||||||||||||||||||
Sbjct: 16629773 actactactactactcttttc 16629793
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>dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1014_E02
          Length = 159669

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 194    actactactactactcttttc 214
              |||||||||||||||||||||
Sbjct: 101597 actactactactactcttttc 101617
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>dbj|AP005464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:B1027A11
          Length = 169506

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 194  actactactactactcttttc 214
            |||||||||||||||||||||
Sbjct: 5683 actactactactactcttttc 5703
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>gb|AF047976.1| Arabidopsis thaliana putative ethylene receptor (ERS2) gene, complete
            cds
          Length = 2441

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  actactactactactcttttcacc 217
            ||||||||||||||||| ||||||
Sbjct: 1929 actactactactactctcttcacc 1906
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>ref|NM_100312.2| Arabidopsis thaliana ERS2 (ETHYLENE RESPONSE SENSOR 2); receptor
            AT1G04310 (ERS2) mRNA, complete cds
          Length = 2468

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 194  actactactactactcttttcacc 217
            ||||||||||||||||| ||||||
Sbjct: 1890 actactactactactctcttcacc 1867
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>gb|AY800560.1| Arabidopsis thaliana clone H0000001114 hypothetical protein
           (AT1G03710) mRNA, complete cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 actactactactactctttt 213
           ||||||||||||||||||||
Sbjct: 541 actactactactactctttt 560
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>gb|AC102355.13| Mus musculus chromosome 5, clone RP23-120C8, complete sequence
          Length = 194854

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   actactactactactctttt 213
             ||||||||||||||||||||
Sbjct: 73208 actactactactactctttt 73227
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>gb|AC005714.11| Drosophila melanogaster clone BACR48M13, complete sequence
          Length = 177736

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    ccaccagcagcgttgtgttt 371
              ||||||||||||||||||||
Sbjct: 139223 ccaccagcagcgttgtgttt 139242
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>ref|XM_715638.1| Candida albicans SC5314 hypothetical protein (CaO19_11771), mRNA
          Length = 3054

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  aatcaactactactactact 208
            ||||||||||||||||||||
Sbjct: 1334 aatcaactactactactact 1353
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>ref|XM_715510.1| Candida albicans SC5314 hypothetical protein (CaO19_4295), mRNA
          Length = 2289

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 aatcaactactactactact 208
           ||||||||||||||||||||
Sbjct: 569 aatcaactactactactact 588
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>gb|AY339821.1| Actinidia deliciosa sucrose synthase (SusA) mRNA, partial cds
          Length = 661

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 aatcaactactactactact 208
           ||||||||||||||||||||
Sbjct: 19  aatcaactactactactact 38
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 194      actactactactactctttt 213
                ||||||||||||||||||||
Sbjct: 15476031 actactactactactctttt 15476050
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>emb|CR774185.17| Zebrafish DNA sequence from clone CH211-237H18 in linkage group 13,
             complete sequence
          Length = 154017

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   aactactactactactcttt 212
             ||||||||||||||||||||
Sbjct: 46836 aactactactactactcttt 46855
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>gb|AC106738.3| Homo sapiens chromosome 16 clone CTD-3032H12, complete sequence
          Length = 152312

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    gacaatcaacaatcaactac 198
              ||||||||||||||||||||
Sbjct: 108084 gacaatcaacaatcaactac 108065
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>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
             sequence
          Length = 164705

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   actactactactactctttt 213
             ||||||||||||||||||||
Sbjct: 25495 actactactactactctttt 25476
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>gb|AC146566.7| Medicago truncatula clone mth2-71p5, complete sequence
          Length = 115996

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   caatcaacaatcaactacta 200
             ||||||||||||||||||||
Sbjct: 30523 caatcaacaatcaactacta 30542
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>emb|AL133270.24| Human DNA sequence from clone RP4-810F7 on chromosome 6 Contains a
             ferritin pseudogene, complete sequence
          Length = 87789

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   actactactactcttttcac 216
             ||||||||||||||||||||
Sbjct: 56520 actactactactcttttcac 56539
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>emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in linkage group 9, complete
              sequence
          Length = 217381

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    aatcaactactactactact 208
              ||||||||||||||||||||
Sbjct: 122377 aatcaactactactactact 122396
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       aacagtacttctgatttgac 22
               ||||||||||||||||||||
Sbjct: 3553166 aacagtacttctgatttgac 3553185
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>gb|DQ409175.1| Bambusa ventricosa cytochrome P450 mRNA, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  actactactactactctttt 213
            ||||||||||||||||||||
Sbjct: 1793 actactactactactctttt 1812
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>gb|AC008349.2|AC008349 Drosophila melanogaster, chromosome 2R, region 58E-58E, BAC clone
             BACR01E01, complete sequence
          Length = 173373

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   ccaccagcagcgttgtgttt 371
             ||||||||||||||||||||
Sbjct: 16282 ccaccagcagcgttgtgttt 16301
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 195      ctactactactactcttttc 214
                ||||||||||||||||||||
Sbjct: 27221486 ctactactactactcttttc 27221467
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 194      actactactactactctttt 213
                ||||||||||||||||||||
Sbjct: 15470565 actactactactactctttt 15470584
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>dbj|AB190366.1| Pyrus pyrifolia PpGAL5 mRNA for beta-D-galactosidase, complete cds
          Length = 3310

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  caactactactactactctt 211
            ||||||||||||||||||||
Sbjct: 2899 caactactactactactctt 2880
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>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I,
             complete sequence
          Length = 101176

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   actactactactactctttt 213
             ||||||||||||||||||||
Sbjct: 87818 actactactactactctttt 87837
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>gb|AC000104.1|F19P19 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 107527

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 194   actactactactactcttttcacc 217
             ||||||||||||||||| ||||||
Sbjct: 77788 actactactactactctcttcacc 77765
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>gb|AE003457.4| Drosophila melanogaster chromosome 2R, section 65 of 73 of the complete
              sequence
          Length = 307324

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    ccaccagcagcgttgtgttt 371
              ||||||||||||||||||||
Sbjct: 174226 ccaccagcagcgttgtgttt 174245
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>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03,
             complete sequence
          Length = 136656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   ctactactactactcttttc 214
             ||||||||||||||||||||
Sbjct: 52575 ctactactactactcttttc 52556
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    acaatcaactactactacta 206
              ||||||||||||||||||||
Sbjct: 745811 acaatcaactactactacta 745830


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,643,299
Number of Sequences: 3902068
Number of extensions: 3643299
Number of successful extensions: 125053
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124739
Number of HSP's gapped (non-prelim): 312
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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