ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38g10 |
|---|---|
| Clone Library Name | barley_pub |
>VGLB_HHV2H (P08666) Glycoprotein B precursor| Length = 904 Score = 30.8 bits (68), Expect = 2.1 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +2 Query: 293 NTSLSLWYHSRACPCLALAAAGTSSRPQAGA-GVCGTWGAHAPRFPGRSAAITSNRSASR 469 N L+LW +R A+A+A R A G P P S R +SR Sbjct: 530 NHELTLWNEARKLNPNAIASATVGRRVSARMLGDVMAVSTCVPVAPDNVIVQNSMRVSSR 589 Query: 470 NGTCSSRPL 496 GTC SRPL Sbjct: 590 PGTCYSRPL 598
>VGLB_HHV23 (P06763) Glycoprotein B precursor| Length = 904 Score = 30.8 bits (68), Expect = 2.1 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Frame = +2 Query: 293 NTSLSLWYHSRACPCLALAAAGTSSRPQAGA-GVCGTWGAHAPRFPGRSAAITSNRSASR 469 N L+LW +R A+A+A R A G P P S R +SR Sbjct: 530 NHELTLWNEARKLNPNAIASATVGRRVSARMLGDVMAVSTCVPVAPDNVIVQNSMRVSSR 589 Query: 470 NGTCSSRPL 496 GTC SRPL Sbjct: 590 PGTCYSRPL 598
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +2 Query: 248 GRARLAGGVEISGTANTSLSLW------YHSRACPCLALAAAGTSSRPQAGAGVCGTWGA 409 G+A A + G +SL+ + Y ++A + AA +S Q A G++GA Sbjct: 320 GQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRAAASSYNTQGAASSLGSYGA 379 Query: 410 HAPRFPGRSAA 442 A + +SAA Sbjct: 380 QAASYGAQSAA 390
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +2 Query: 248 GRARLAGGVEISGTANTSLSLW------YHSRACPCLALAAAGTSSRPQAGAGVCGTWGA 409 G+A A + G +SL+ + Y ++A + AA +S Q A G++GA Sbjct: 320 GQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRAAASSYNTQGAASSLGSYGA 379 Query: 410 HAPRFPGRSAA 442 A + +SAA Sbjct: 380 QAASYGAQSAA 390
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = +2 Query: 248 GRARLAGGVEISGTANTSLSLW------YHSRACPCLALAAAGTSSRPQAGAGVCGTWGA 409 G+A A + G +SL+ + Y ++A + AA +S Q A G++GA Sbjct: 320 GQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRAAASSYNTQGAASSLGSYGA 379 Query: 410 HAPRFPGRSAA 442 A + +SAA Sbjct: 380 QAASYGAQSAA 390
>FKBP4_ARATH (Q9SCY3) Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4,| chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) Length = 217 Score = 30.4 bits (67), Expect = 2.7 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +2 Query: 50 ISFLCSST*QHITTTIDARATRVPYYSSHTKATTSKDYTSDGPIGCCD---GVSD*HPRW 220 + FL SS T +DA ATR+ YY++ Y G +G CD G D PR Sbjct: 56 LGFLASSILS--LTPLDADATRIDYYATVGDPLCEYSYAKSG-LGFCDLDVGFGDEAPRG 112 Query: 221 -LVHMHQNDDGRARLAGG 271 LV++H AR A G Sbjct: 113 VLVNIHYT----ARFADG 126
>LIPB1_MOUSE (Q8C8U0) Liprin-beta-1 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein binding protein 1) (PTPRF-interacting protein binding protein 1) Length = 969 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Frame = +2 Query: 236 QNDDGRARLAGGVEISGTANTSLSLWYHSRACPCLALAAA-GTSSRPQAGAGVCGTWGAH 412 + DGRA L E+S + S S S + L A+ GT P T+G Sbjct: 405 EEGDGRAILGAAAEVSLSDGVSTSSLQKSSSLGNLKKEASDGTDKAPTDSR----TFGTL 460 Query: 413 APRFPGRSAAITSNRSASRNGTCS 484 P+ PG A++ N +R S Sbjct: 461 PPKVPGHEASVDDNPFGTRKARSS 484
>MYRA_MICGR (P37000) Mycinamicin-resistance protein myrA| Length = 295 Score = 30.0 bits (66), Expect = 3.5 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Frame = +2 Query: 332 PCLALAAAGTSSRPQAGAGVCGTWGAHAPRFP--GRSAAITSNRSASRNG 475 P L AA + P+AGA VC TWG R P + A+ N A RNG Sbjct: 140 PALRRAAR---AHPRAGAAVCDTWG----RLPLADATVAVLVNVFAPRNG 182
>FOXO1_MOUSE (Q9R1E0) Forkhead box protein O1A (Forkhead in rhabdomyosarcoma)| Length = 652 Score = 29.3 bits (64), Expect = 6.0 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = +2 Query: 239 NDDGRARLAGGVEISGTANTSLSLWYHS----RACPCLALAAAGTSSRPQAGAGVCG 397 N D A LA +S ++LSL S RA C+A+AAA +SR G+CG Sbjct: 51 NPDAAASLASASAVSTDFMSNLSLLEESEDFARAPGCVAVAAAAAASR-----GLCG 102
>Y022_TREPA (O83066) Hypothetical protein TP0022| Length = 722 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/87 (26%), Positives = 37/87 (42%) Frame = -2 Query: 432 RPGKRGAWAPHVPHTPAPAWGLEEVPAAARAKQGHAREWYHSDSDVFAVPEISTPPAKRA 253 RPG++GA A HVP P V +A + R++ H + V P +S + Sbjct: 489 RPGEQGARALHVPSFSFP------VRSARGVSEESTRDFAHLGAFVLETPNVSCTHSAAD 542 Query: 252 RPSSFWCM*TSQRGCQSLTPSQQPIGP 172 PS + Q G + S++ + P Sbjct: 543 TPSI-----SEQTGGVAHVQSEEDVDP 564
>TOP2_ASFB7 (Q00942) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1192 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 278 ISGTANTSLSLWYHSRACPCLALAAAGTS 364 +S T LS W + RAC C A GT+ Sbjct: 210 LSETEQADLSAWIYLRACQCAAYVGKGTT 238
>SP5_HUMAN (Q6BEB4) Transcription factor Sp5| Length = 398 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +2 Query: 347 AAAGTSSRPQAGAGVCGTWGAHAPRFPGRSAAITSNRSASRNG 475 A G S P +G HAPRFP +AA + +A + G Sbjct: 197 AGPGASGVPGSGLSGACAGAPHAPRFPASAAAAAAAAAALQRG 239
>TOP2_ASFM2 (P34203) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1191 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 278 ISGTANTSLSLWYHSRACPCLALAAAGTS 364 +S T LS W + RAC C A GT+ Sbjct: 210 LSETEQADLSAWIYLRACQCAAYVGKGTT 238
>NUMBL_MOUSE (O08919) Numb-like protein| Length = 604 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 6/87 (6%) Frame = -2 Query: 414 AWAPHVPHTPAPAWGLEEVPAAARAKQGH------AREWYHSDSDVFAVPEISTPPAKRA 253 A P T AWG VPAAA + GH A W S V + ++ Sbjct: 378 ASGPPPATTGTSAWGEPSVPAAAAFQPGHKRTPSEAERWLEEVSQVAKAQQQQQQQQQQQ 437 Query: 252 RPSSFWCM*TSQRGCQSLTPSQQPIGP 172 + + +L P P+GP Sbjct: 438 QQQQATSVPPMPTMAPTLQPFSAPVGP 464 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,773,474 Number of Sequences: 219361 Number of extensions: 928875 Number of successful extensions: 3115 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3010 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3110 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
