ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kina... 33 0.23
2LEU3_KLULA (P23390) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 27 9.7

>M3K4_HUMAN (Q9Y6R4) Mitogen-activated protein kinase kinase kinase 4 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4)
           (MEKK 4) (MAP three kinase 1)
          Length = 1607

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = -3

Query: 171 DQVLGWDHP*IEFGAEDQVLETGFLYHSLISVYTPSVPK*LSQL 40
           D  LGW       GA D   E GF  H L S+Y P V K L Q+
Sbjct: 501 DDSLGW-------GAPDWSTEAGFSRHCLTSIYRPFVDKALKQM 537



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>LEU3_KLULA (P23390) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 362

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 66  REYKRR*ENDIETQFPRLDLQHQIL 140
           R +++  E  I+T+FP+L +QHQ++
Sbjct: 198 RLWRKTVEETIKTEFPQLTVQHQLI 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,318,740
Number of Sequences: 219361
Number of extensions: 772546
Number of successful extensions: 1450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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