Clone Name | rbart38g04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY676930.1| Oryza sativa (indica cultivar-group) transcription factor WRKY31 (WRKY31) mRNA, complete cds Length = 1086 Score = 58.0 bits (29), Expect = 2e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341 |||||| |||||||||||||| |||||||||| |||| |||||||||| || |||||| Sbjct: 810 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 751 Query: 342 cac 344 ||| Sbjct: 750 cac 748 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 agcccctcggtcttcaccgtcaggc 430 ||||||||| ||||||||||||||| Sbjct: 674 agcccctcgatcttcaccgtcaggc 650
>tpg|BK005077.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 74 (WRKY74) gene, complete cds Length = 1624 Score = 58.0 bits (29), Expect = 2e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341 |||||| |||||||||||||| |||||||||| |||| |||||||||| || |||||| Sbjct: 1348 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 1289 Query: 342 cac 344 ||| Sbjct: 1288 cac 1286 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 agcccctcggtcttcaccgtcaggc 430 ||||||||| ||||||||||||||| Sbjct: 1212 agcccctcgatcttcaccgtcaggc 1188
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 58.0 bits (29), Expect = 2e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341 |||||| |||||||||||||| |||||||||| |||| |||||||||| || |||||| Sbjct: 10077626 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 10077567 Query: 342 cac 344 ||| Sbjct: 10077566 cac 10077564 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 agcccctcggtcttcaccgtcaggc 430 ||||||||| ||||||||||||||| Sbjct: 10077490 agcccctcgatcttcaccgtcaggc 10077466
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 58.0 bits (29), Expect = 2e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341 |||||| |||||||||||||| |||||||||| |||| |||||||||| || |||||| Sbjct: 106930 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 106871 Query: 342 cac 344 ||| Sbjct: 106870 cac 106868 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 agcccctcggtcttcaccgtcaggc 430 ||||||||| ||||||||||||||| Sbjct: 106794 agcccctcgatcttcaccgtcaggc 106770
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 58.0 bits (29), Expect = 2e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341 |||||| |||||||||||||| |||||||||| |||| |||||||||| || |||||| Sbjct: 37304 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 37245 Query: 342 cac 344 ||| Sbjct: 37244 cac 37242 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 agcccctcggtcttcaccgtcaggc 430 ||||||||| ||||||||||||||| Sbjct: 37168 agcccctcgatcttcaccgtcaggc 37144
>dbj|AK065265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K14, full insert sequence Length = 1714 Score = 58.0 bits (29), Expect = 2e-05 Identities = 55/63 (87%), Gaps = 3/63 (4%) Strand = Plus / Minus Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341 |||||| |||||||||||||| |||||||||| |||| |||||||||| || |||||| Sbjct: 1105 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 1046 Query: 342 cac 344 ||| Sbjct: 1045 cac 1043 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 agcccctcggtcttcaccgtcaggc 430 ||||||||| ||||||||||||||| Sbjct: 969 agcccctcgatcttcaccgtcaggc 945
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 ccctcggtcttcaccgtcagg 429 ||||||||||||||||||||| Sbjct: 7403315 ccctcggtcttcaccgtcagg 7403295
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cgtcgacggcgccgagaacg 313 |||||||||||||||||||| Sbjct: 2880134 cgtcgacggcgccgagaacg 2880153
>gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, complete sequence Length = 177446 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cctccgtgtcggccggcggc 150 |||||||||||||||||||| Sbjct: 57021 cctccgtgtcggccggcggc 57040
>ref|NM_138426.1| Homo sapiens glucocorticoid induced transcript 1 (GLCCI1), mRNA Length = 3037 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cctccgtgtcggccggcggc 150 |||||||||||||||||||| Sbjct: 518 cctccgtgtcggccggcggc 537
>gb|AC006042.2| Homo sapiens BAC clone RP11-505D17 from 7, complete sequence Length = 178361 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cctccgtgtcggccggcggc 150 |||||||||||||||||||| Sbjct: 27707 cctccgtgtcggccggcggc 27726
>emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, complete sequence Length = 76169 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ttgcattctctcttttttca 23 |||||||||||||||||||| Sbjct: 13292 ttgcattctctcttttttca 13311
>emb|AL080285.6|HSJ344J20 Human DNA sequence from clone RP3-344J20 on chromosome 6q16.1-16.3 Contains an arginase, type II (ARG2) pseudogene and a peroxiredoxin 2 (thiol-specific antioxidant 1, natural killer-enhancing factor B, thioredoxin-dependent peroxide reductase 1, thiol-specific antioxidant 1, natural killer-enhancing factor)(PRDX2)(PRP, TSA, NKEFB, TDPX1) pseudogene, complete sequence Length = 170803 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 acaccattgtctggagctca 195 |||||||||||||||||||| Sbjct: 63410 acaccattgtctggagctca 63391
>gb|BC050291.1| Homo sapiens glucocorticoid induced transcript 1, mRNA (cDNA clone MGC:43752 IMAGE:5272003), complete cds Length = 3037 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cctccgtgtcggccggcggc 150 |||||||||||||||||||| Sbjct: 518 cctccgtgtcggccggcggc 537
>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds Length = 6258 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cctccgtgtcggccggcggc 150 |||||||||||||||||||| Sbjct: 295 cctccgtgtcggccggcggc 314
>gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160904 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ggttgcattctctctttttt 21 |||||||||||||||||||| Sbjct: 119866 ggttgcattctctctttttt 119847
>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone BACR02G16, complete sequence Length = 177480 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcgccgagaacgggtggtgc 321 |||||||||||||||||||| Sbjct: 64710 gcgccgagaacgggtggtgc 64691
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cgtcgacggcgccgagaacg 313 |||||||||||||||||||| Sbjct: 2796516 cgtcgacggcgccgagaacg 2796535
>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the complete sequence Length = 225974 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gcgccgagaacgggtggtgc 321 |||||||||||||||||||| Sbjct: 46977 gcgccgagaacgggtggtgc 46958
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgtcgacggcgccgagaacg 313 |||||||||||||||||||| Sbjct: 4071370 cgtcgacggcgccgagaacg 4071351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,221,790 Number of Sequences: 3902068 Number of extensions: 3221790 Number of successful extensions: 83644 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83318 Number of HSP's gapped (non-prelim): 326 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)