ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY676930.1| Oryza sativa (indica cultivar-group) transcriptio... 58 2e-05
2tpg|BK005077.1| TPA: TPA_inf: Oryza sativa (indica cultivar-grou... 58 2e-05
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
6dbj|AK065265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.5
8gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.8
9gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, com... 40 5.8
10ref|NM_138426.1| Homo sapiens glucocorticoid induced transcript ... 40 5.8
11gb|AC006042.2| Homo sapiens BAC clone RP11-505D17 from 7, comple... 40 5.8
12emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, compl... 40 5.8
13emb|AL080285.6|HSJ344J20 Human DNA sequence from clone RP3-344J2... 40 5.8
14gb|BC050291.1| Homo sapiens glucocorticoid induced transcript 1,... 40 5.8
15gb|AY098636.1| Mus musculus testhymin mRNA, complete cds 40 5.8
16gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Canc... 40 5.8
17gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, r... 40 5.8
18emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.8
19gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 11... 40 5.8
20gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.8

>gb|AY676930.1| Oryza sativa (indica cultivar-group) transcription factor WRKY31
           (WRKY31) mRNA, complete cds
          Length = 1086

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                       
Query: 285 gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341
           |||||| |||||||||||||| |||||||||| ||||   |||||||||| || ||||||
Sbjct: 810 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 751

              
Query: 342 cac 344
           |||
Sbjct: 750 cac 748



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 406 agcccctcggtcttcaccgtcaggc 430
           ||||||||| |||||||||||||||
Sbjct: 674 agcccctcgatcttcaccgtcaggc 650



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>tpg|BK005077.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription
            factor 74 (WRKY74) gene, complete cds
          Length = 1624

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                        
Query: 285  gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341
            |||||| |||||||||||||| |||||||||| ||||   |||||||||| || ||||||
Sbjct: 1348 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 1289

               
Query: 342  cac 344
            |||
Sbjct: 1288 cac 1286



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 406  agcccctcggtcttcaccgtcaggc 430
            ||||||||| |||||||||||||||
Sbjct: 1212 agcccctcgatcttcaccgtcaggc 1188



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                            
Query: 285      gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341
                |||||| |||||||||||||| |||||||||| ||||   |||||||||| || ||||||
Sbjct: 10077626 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 10077567

                   
Query: 342      cac 344
                |||
Sbjct: 10077566 cac 10077564



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 406      agcccctcggtcttcaccgtcaggc 430
                ||||||||| |||||||||||||||
Sbjct: 10077490 agcccctcgatcttcaccgtcaggc 10077466



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>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0466E03
          Length = 138343

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                          
Query: 285    gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341
              |||||| |||||||||||||| |||||||||| ||||   |||||||||| || ||||||
Sbjct: 106930 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 106871

                 
Query: 342    cac 344
              |||
Sbjct: 106870 cac 106868



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 406    agcccctcggtcttcaccgtcaggc 430
              ||||||||| |||||||||||||||
Sbjct: 106794 agcccctcgatcttcaccgtcaggc 106770



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>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1253_E02
          Length = 166645

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                         
Query: 285   gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341
             |||||| |||||||||||||| |||||||||| ||||   |||||||||| || ||||||
Sbjct: 37304 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 37245

                
Query: 342   cac 344
             |||
Sbjct: 37244 cac 37242



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 406   agcccctcggtcttcaccgtcaggc 430
             ||||||||| |||||||||||||||
Sbjct: 37168 agcccctcgatcttcaccgtcaggc 37144



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>dbj|AK065265.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K14, full
            insert sequence
          Length = 1714

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 55/63 (87%), Gaps = 3/63 (4%)
 Strand = Plus / Minus

                                                                        
Query: 285  gttctcgggcgtcgacggcgccgagaacgggtggtgc---tccggcggcgtcatgccgct 341
            |||||| |||||||||||||| |||||||||| ||||   |||||||||| || ||||||
Sbjct: 1105 gttctccggcgtcgacggcgcggagaacgggttgtgctgatccggcggcgccaggccgct 1046

               
Query: 342  cac 344
            |||
Sbjct: 1045 cac 1043



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 406 agcccctcggtcttcaccgtcaggc 430
           ||||||||| |||||||||||||||
Sbjct: 969 agcccctcgatcttcaccgtcaggc 945



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 409     ccctcggtcttcaccgtcagg 429
               |||||||||||||||||||||
Sbjct: 7403315 ccctcggtcttcaccgtcagg 7403295



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     cgtcgacggcgccgagaacg 313
               ||||||||||||||||||||
Sbjct: 2880134 cgtcgacggcgccgagaacg 2880153



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>gb|AC147035.3| Pan troglodytes BAC clone RP43-104N19 from 7, complete sequence
          Length = 177446

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   cctccgtgtcggccggcggc 150
             ||||||||||||||||||||
Sbjct: 57021 cctccgtgtcggccggcggc 57040



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>ref|NM_138426.1| Homo sapiens glucocorticoid induced transcript 1 (GLCCI1), mRNA
          Length = 3037

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 cctccgtgtcggccggcggc 150
           ||||||||||||||||||||
Sbjct: 518 cctccgtgtcggccggcggc 537



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>gb|AC006042.2| Homo sapiens BAC clone RP11-505D17 from 7, complete sequence
          Length = 178361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   cctccgtgtcggccggcggc 150
             ||||||||||||||||||||
Sbjct: 27707 cctccgtgtcggccggcggc 27726



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>emb|AL032639.1|CEY38F1A Caenorhabditis elegans YAC Y38F1A, complete sequence
          Length = 76169

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ttgcattctctcttttttca 23
             ||||||||||||||||||||
Sbjct: 13292 ttgcattctctcttttttca 13311



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>emb|AL080285.6|HSJ344J20 Human DNA sequence from clone RP3-344J20 on chromosome 6q16.1-16.3
             Contains an arginase, type II (ARG2) pseudogene and a
             peroxiredoxin 2 (thiol-specific antioxidant 1, natural
             killer-enhancing factor B, thioredoxin-dependent peroxide
             reductase 1, thiol-specific antioxidant 1, natural
             killer-enhancing factor)(PRDX2)(PRP, TSA, NKEFB, TDPX1)
             pseudogene, complete sequence
          Length = 170803

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   acaccattgtctggagctca 195
             ||||||||||||||||||||
Sbjct: 63410 acaccattgtctggagctca 63391



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>gb|BC050291.1| Homo sapiens glucocorticoid induced transcript 1, mRNA (cDNA clone
           MGC:43752 IMAGE:5272003), complete cds
          Length = 3037

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 cctccgtgtcggccggcggc 150
           ||||||||||||||||||||
Sbjct: 518 cctccgtgtcggccggcggc 537



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>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds
          Length = 6258

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 cctccgtgtcggccggcggc 150
           ||||||||||||||||||||
Sbjct: 295 cctccgtgtcggccggcggc 314



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>gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160904

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ggttgcattctctctttttt 21
              ||||||||||||||||||||
Sbjct: 119866 ggttgcattctctctttttt 119847



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>gb|AC008287.4|AC008287 Drosophila melanogaster, chromosome 3R, region 100C-100C, BAC clone
             BACR02G16, complete sequence
          Length = 177480

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gcgccgagaacgggtggtgc 321
             ||||||||||||||||||||
Sbjct: 64710 gcgccgagaacgggtggtgc 64691



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 294     cgtcgacggcgccgagaacg 313
               ||||||||||||||||||||
Sbjct: 2796516 cgtcgacggcgccgagaacg 2796535



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>gb|AE003778.3| Drosophila melanogaster chromosome 3R, section 116 of 118 of the
             complete sequence
          Length = 225974

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gcgccgagaacgggtggtgc 321
             ||||||||||||||||||||
Sbjct: 46977 gcgccgagaacgggtggtgc 46958



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 294     cgtcgacggcgccgagaacg 313
               ||||||||||||||||||||
Sbjct: 4071370 cgtcgacggcgccgagaacg 4071351


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,221,790
Number of Sequences: 3902068
Number of extensions: 3221790
Number of successful extensions: 83644
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83318
Number of HSP's gapped (non-prelim): 326
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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