ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38g02 |
|---|---|
| Clone Library Name | barley_pub |
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 50.1 bits (118), Expect = 4e-06 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -2 Query: 511 EVRQHAFWVPASKRYY-ALAKKLEGMELPACVNATTCLPRAPRVTRVSKGCSANVFLDNA 335 E + FW+P +K +Y A + L+ M+L C + CLP P+V SK +++ ++ N Sbjct: 175 EAPKEVFWLPITKSWYNAATEALKDMKLRKCYS-DECLPGEPKVVFGSKSSTSDFYVRNK 233 Query: 334 EYRQFLRKQFGCTPVEMESAAVALVA 257 Y FL F + SA+VAL + Sbjct: 234 AYGDFLNDNFDAKTADTTSASVALTS 259
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 50.1 bits (118), Expect = 4e-06 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = -2 Query: 511 EVRQHAFWVPASKRYY-ALAKKLEGMELPACVNATTCLPRAPRVTRVSKGCSANVFLDNA 335 E + FW+P +K +Y A + L+ M+L C + CLP P+V SK +++ ++ N Sbjct: 175 EAPKEVFWLPITKSWYNAATEALKDMKLRKCYS-DECLPGKPKVVFGSKSSTSDFYVRNK 233 Query: 334 EYRQFLRKQFGCTPVEMESAAVALVA 257 Y FL F + SA+VAL + Sbjct: 234 AYGDFLNDNFDAKTADTASASVALTS 259
>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 269 Score = 45.1 bits (105), Expect = 1e-04 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Frame = -2 Query: 388 RVTRVSKG--CSANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXX 215 RV+R+ +G S ++F+ +A+ R + ++FG VEME AA A VA GVPF+ IR Sbjct: 158 RVSRLVEGRVASGDLFVSDAQTRARIIREFGAHGVEMEGAAFAHVASVNGVPFVIIRCIS 217 Query: 214 XXXXXXXXXGNEASTFIDIAAKNAVQVMLKFVPLL 110 F AA+ + + L+ + L Sbjct: 218 DGAGAEQDVSMSYKEFSTRAARRSALLTLRVLERL 252
>MTNN_BUCBP (Q89AQ7) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 252 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Frame = -2 Query: 361 SANVFLDNAEYRQFLRKQF-GCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXG 185 S ++F+D E + L+K+F V+ME+AA+A V + +P L I+ Sbjct: 155 SGDIFIDTCEKKSLLKKRFPKAIAVDMEAAAIAHVCYQFNIPILIIK--SISDSSDINAA 212 Query: 184 NEASTFIDIAAKNAVQVMLKFVPLLGKSAEEM 89 + FI++A+KN+ V + + L K+ + + Sbjct: 213 DNFKYFINLASKNSSLVTINVLQTLFKNTKNI 244
>MTNN_HELPY (O24915) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 38.1 bits (87), Expect = 0.014 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = -2 Query: 361 SANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXGN 182 S + F+ + E ++FL +F + VEME A+VA V GVP +R Sbjct: 150 SGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLR------SISDNADE 203 Query: 181 EASTFIDIAAKNAVQVMLKFV 119 EA+ D + + Q KF+ Sbjct: 204 EANMSFDAFLEKSAQTSAKFL 224
>MTNN_HELPJ (Q9ZMY2) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 230 Score = 36.2 bits (82), Expect = 0.055 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = -2 Query: 361 SANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTIR 224 S + F+ + E ++FL +F + VEME A+VA V GVP +R Sbjct: 149 SGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLR 194
>MTNN_HAEIN (P45113) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 229 Score = 35.0 bits (79), Expect = 0.12 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Frame = -2 Query: 364 CSANVFLDNAEYRQFLRKQF-GCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXX 188 CS + F+++ + ++ F T VEME+ A+A V + VPF+ +R Sbjct: 146 CSGDSFINSEDKIAQIKADFPNVTGVEMEATAIAQVCYAFNVPFVVVRAISDGGDGKASM 205 Query: 187 GNEASTFIDIAAKNAVQVMLKFVPLL 110 E F+ +AAK + ++L + L Sbjct: 206 SFE--EFLPLAAKQSSALVLGMIDRL 229
>MTNN_MYCTU (P67656) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 34.7 bits (78), Expect = 0.16 Identities = 28/114 (24%), Positives = 49/114 (42%) Frame = -2 Query: 451 KLEGMELPACVNATTCLPRAPRVTRVSKGCSANVFLDNAEYRQFLRKQFGCTPVEMESAA 272 +L+G L A R PR+ + + +L R L + G VEME A Sbjct: 142 RLDGFTLAPLSTAAGGGGRQPRIY-YGTILTGDQYLHCERTRNRLHHELGGMAVEMEGGA 200 Query: 271 VALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAKNAVQVMLKFVPLL 110 VA + + +P+L IR + + F+ A ++ +V+L+ +P+L Sbjct: 201 VAQICASFDIPWLVIRALSDLAGADSGV--DFNRFVGEVAASSARVLLRLLPVL 252
>MTNN_MYCBO (P67657) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 255 Score = 34.7 bits (78), Expect = 0.16 Identities = 28/114 (24%), Positives = 49/114 (42%) Frame = -2 Query: 451 KLEGMELPACVNATTCLPRAPRVTRVSKGCSANVFLDNAEYRQFLRKQFGCTPVEMESAA 272 +L+G L A R PR+ + + +L R L + G VEME A Sbjct: 142 RLDGFTLAPLSTAAGGGGRQPRIY-YGTILTGDQYLHCERTRNRLHHELGGMAVEMEGGA 200 Query: 271 VALVAHTQGVPFLTIRXXXXXXXXXXXXGNEASTFIDIAAKNAVQVMLKFVPLL 110 VA + + +P+L IR + + F+ A ++ +V+L+ +P+L Sbjct: 201 VAQICASFDIPWLVIRALSDLAGADSGV--DFNRFVGEVAASSARVLLRLLPVL 252
>MTNN_BACSU (O32028) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine| nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 231 Score = 33.1 bits (74), Expect = 0.46 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -2 Query: 379 RVSKGCSA--NVFLDNAEYRQFLRKQFG-CTPVEMESAAVALVAHTQGVPFLTIRXXXXX 209 +V+KG A + F+++ + + +R +F VEME+AAVA V H PF+ IR Sbjct: 140 QVAKGTIATGDSFMNDPKRVEEVRARFSDLYAVEMEAAAVAQVCHQFKTPFVVIRALSDI 199 Query: 208 XXXXXXXGNEASTFIDIAAKNAVQVMLKFV 119 + F++ AA ++ +++LK + Sbjct: 200 AGKESHVSFD--QFLEQAAVHSTELVLKVI 227
>DEOD_CLOTE (Q894Z3) Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1)| (PNP) Length = 235 Score = 30.8 bits (68), Expect = 2.3 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -2 Query: 361 SANVFLDNAEYRQFLRKQFGCTPVEMESAAVALVAHTQGVPFLTI 227 S+++F D+ + ++GC VEME+AA+ +A GV LT+ Sbjct: 155 SSDIFYDDDKEDWKTWAKYGCLGVEMETAALYTIAAKYGVNALTL 199
>MTNN_SALTY (P60217) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 30.0 bits (66), Expect = 3.9 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = -2 Query: 361 SANVFLDNAEYRQFLRKQF-GCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXG 185 S + F++ + +R F VEME+ A+A V H VPF+ +R Sbjct: 147 SGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLS 206 Query: 184 NEASTFIDIAAKNAVQVMLKFVPLL 110 + F+ +AAK + ++ V L Sbjct: 207 FD--EFLAVAAKQSTLMVETLVQKL 229
>MTNN_SALTI (P60216) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 30.0 bits (66), Expect = 3.9 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = -2 Query: 361 SANVFLDNAEYRQFLRKQF-GCTPVEMESAAVALVAHTQGVPFLTIRXXXXXXXXXXXXG 185 S + F++ + +R F VEME+ A+A V H VPF+ +R Sbjct: 147 SGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLS 206 Query: 184 NEASTFIDIAAKNAVQVMLKFVPLL 110 + F+ +AAK + ++ V L Sbjct: 207 FD--EFLAVAAKQSTLMVETLVQKL 229
>RL28_BUCAP (Q8KA33) 50S ribosomal protein L28| Length = 78 Score = 29.3 bits (64), Expect = 6.7 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -2 Query: 514 PEVRQHAFWVPASKRYYALAKKLEGM 437 P ++ H FW+P KR+ L GM Sbjct: 31 PNIQYHRFWIPEEKRFIKLRISAHGM 56
>RL28_PHOLL (Q7MY29) 50S ribosomal protein L28| Length = 78 Score = 28.9 bits (63), Expect = 8.7 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -2 Query: 514 PEVRQHAFWVPASKRYYALAKKLEGMEL 431 P + H FWV + KR+ L ++GM + Sbjct: 31 PNLHSHRFWVESEKRFVTLRVSVKGMRV 58
>MTNN_SHIFL (P0AF15) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 292 VEMESAAVALVAHTQGVPFLTIR 224 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>MTNN_ECOLI (P0AF12) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 292 VEMESAAVALVAHTQGVPFLTIR 224 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>MTNN_ECOL6 (P0AF13) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 292 VEMESAAVALVAHTQGVPFLTIR 224 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>MTNN_ECO57 (P0AF14) MTA/SAH nucleosidase (EC 3.2.2.9) (P46)| (5'-methylthioadenosine nucleosidase) (S-adenosylhomocysteine nucleosidase) Length = 232 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 292 VEMESAAVALVAHTQGVPFLTIR 224 VEME+ A+A V H VPF+ +R Sbjct: 171 VEMEATAIAHVCHNFNVPFVVVR 193
>ARGD_XYLFT (Q87DM8) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)| Length = 411 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 6/40 (15%) Frame = -2 Query: 181 EASTFIDIAAKNAVQVM------LKFVPLLGKSAEEMDDG 80 +AS +++AA++ V ++ L+FVP L S EE+ DG Sbjct: 355 QASAILEVAAEHGVLLLQAGPDVLRFVPALNVSDEELADG 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,079,651 Number of Sequences: 219361 Number of extensions: 548205 Number of successful extensions: 1709 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1693 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1709 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
