ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
2dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
3dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
4gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
5gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 242 1e-60
8gb|AY111331.1| Zea mays CL47623_1 mRNA sequence 80 8e-12
9gb|AC147018.4| Mus musculus BAC clone RP23-284H11 from chromosom... 42 1.8
10emb|AL049559.2|SPCC1450 S.pombe chromosome III cosmid c1450 42 1.8
11gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosom... 42 1.8
12gb|AC122024.6| Mus musculus BAC clone RP24-378K7 from chromosome... 42 1.8
13ref|NM_001023291.1| Schizosaccharomyces pombe 972h- transcriptio... 42 1.8
14gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, compl... 42 1.8
15emb|AJ224984.1|PDU224984 Platynereis dumerilii mRNA for wee1-lik... 42 1.8
16gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173... 40 7.3
17emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on ch... 40 7.3
18gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosom... 40 7.3
19gb|AF038606.1| Caenorhabditis elegans cosmid C04C3, complete seq... 40 7.3
20gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's... 40 7.3
21emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chro... 40 7.3
22emb|AL390834.24| Human DNA sequence from clone RP11-468L18 on ch... 40 7.3
23gb|AC087354.13| Homo sapiens chromosome 8, clone RP11-398H6, com... 40 7.3
24emb|AL645744.16| Mouse DNA sequence from clone RP23-148E7 on chr... 40 7.3
25gb|AF187000.4| Homo sapiens chromosome 8 clone RP1-316L14 map 8q... 40 7.3
26emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chrom... 40 7.3
27gb|AC090093.7| Homo sapiens chromosome 8, clone RP11-656A10, com... 40 7.3
28gb|AC063965.8| Homo sapiens chromosome 10 clone RP11-380G5, comp... 40 7.3
29gb|AC008087.11| Homo sapiens chromosome 17, clone RP5-1127L24, c... 40 7.3
30gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park... 40 7.3
31gb|AC100872.2| Homo sapiens chromosome 8, clone RP11-973F15, com... 40 7.3
32gb|AF258545.2| Homo sapiens chromosome 17 clone PAC P579 HC90, H... 40 7.3
33gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-18... 40 7.3
34gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromos... 40 7.3
35gb|AF258547.1|AF258547 Homo sapiens chromosome 17 unknown sequence 40 7.3
36gb|AC027455.22| Homo sapiens chromosome 17, clone RP11-411G7, co... 40 7.3
37gb|AC009302.2| Homo sapiens BAC clone RP11-71J24 from 2, complet... 40 7.3
38gb|AC128711.4| Homo sapiens 3 BAC RP11-70N22 (Roswell Park Cance... 40 7.3
39emb|CT030129.9| Zebrafish DNA sequence from clone CH73-314G15 in... 40 7.3
40gb|AF067844.1|AF067844 Homo sapiens chromosome 10 clone PTEN, co... 40 7.3
41gb|AC025500.8| Mus musculus chromosome 9, clone RP23-47M24, comp... 40 7.3 
>dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D01, full
           insert sequence
          Length = 1271

 Score =  262 bits (132), Expect = 1e-66
 Identities = 300/356 (84%)
 Strand = Plus / Minus

                                                                       
Query: 179 acttattcagcttggtcgacttccattgcttcaatggagtccgtgagtatttccttcaac 238
           ||||| |||| |||||||||||||||||||||||    |||| |||| |||||  | |||
Sbjct: 943 acttaatcagtttggtcgacttccattgcttcaacattgtccatgagaatttctcttaac 884

                                                                       
Query: 239 ttttgtcctctttctttcgccaagccaatgcacgccttaatagctgccatggacgtcact 298
           |||  ||  || || || ||||||| ||||||  ||||||||| || ||| || ||||||
Sbjct: 883 tttcttctcctgtccttagccaagctaatgcattccttaatagttgtcatagatgtcact 824

                                                                       
Query: 299 ccacctccaggtttttgtattgacactaagcggcccgaagaatctagaacaactgtcaca 358
            |||||||||||||||||||||||||||   || | |||||||| |||||||  ||||||
Sbjct: 823 gcacctccaggtttttgtattgacactatctggtctgaagaatcgagaacaatagtcaca 764

                                                                       
Query: 359 gaggtctctattatcgattcttcttcagcagttgggtccactagaatactatccttgtgg 418
           || ||||||||||| |||||||||||||||||||| ||| |||||| | |||||||||| 
Sbjct: 763 gaagtctctattattgattcttcttcagcagttggatccgctagaacattatccttgtga 704

                                                                       
Query: 419 agtgcacatgtgagaggaaatggaatgtcaccaagagtaagcttccttttttctctgttt 478
           ||||||||||| || | ||||||||  | |  ||  ||||||||||| ||||||||||||
Sbjct: 703 agtgcacatgtaagggaaaatggaacattagtaatcgtaagcttcctcttttctctgttt 644

                                                                   
Query: 479 accaattcatatttggttttgccttcattgcctccaacagtaaacaccctaccatc 534
           |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 643 accaattcatatttggctttgccttcattgcccccaacagtaaatactctaccatc 588
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>dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full
           insert sequence
          Length = 1254

 Score =  262 bits (132), Expect = 1e-66
 Identities = 300/356 (84%)
 Strand = Plus / Minus

                                                                       
Query: 179 acttattcagcttggtcgacttccattgcttcaatggagtccgtgagtatttccttcaac 238
           ||||| |||| |||||||||||||||||||||||    |||| |||| |||||  | |||
Sbjct: 956 acttaatcagtttggtcgacttccattgcttcaacattgtccatgagaatttctcttaac 897

                                                                       
Query: 239 ttttgtcctctttctttcgccaagccaatgcacgccttaatagctgccatggacgtcact 298
           |||  ||  || || || ||||||| ||||||  ||||||||| || ||| || ||||||
Sbjct: 896 tttcttctcctgtccttagccaagctaatgcattccttaatagttgtcatagatgtcact 837

                                                                       
Query: 299 ccacctccaggtttttgtattgacactaagcggcccgaagaatctagaacaactgtcaca 358
            |||||||||||||||||||||||||||   || | |||||||| |||||||  ||||||
Sbjct: 836 gcacctccaggtttttgtattgacactatctggtctgaagaatcgagaacaatagtcaca 777

                                                                       
Query: 359 gaggtctctattatcgattcttcttcagcagttgggtccactagaatactatccttgtgg 418
           || ||||||||||| |||||||||||||||||||| ||| |||||| | |||||||||| 
Sbjct: 776 gaagtctctattattgattcttcttcagcagttggatccgctagaacattatccttgtga 717

                                                                       
Query: 419 agtgcacatgtgagaggaaatggaatgtcaccaagagtaagcttccttttttctctgttt 478
           ||||||||||| || | ||||||||  | |  ||  ||||||||||| ||||||||||||
Sbjct: 716 agtgcacatgtaagggaaaatggaacattagtaatcgtaagcttcctcttttctctgttt 657

                                                                   
Query: 479 accaattcatatttggttttgccttcattgcctccaacagtaaacaccctaccatc 534
           |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 656 accaattcatatttggctttgccttcattgcccccaacagtaaatactctaccatc 601
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>dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113A20, full
           insert sequence
          Length = 1130

 Score =  254 bits (128), Expect = 3e-64
 Identities = 299/356 (83%)
 Strand = Plus / Minus

                                                                       
Query: 179 acttattcagcttggtcgacttccattgcttcaatggagtccgtgagtatttccttcaac 238
           ||||| |||| ||||||||||||||| |||||||    |||| |||| |||||  | |||
Sbjct: 989 acttaatcagtttggtcgacttccatagcttcaacattgtccatgagaatttctcttaac 930

                                                                       
Query: 239 ttttgtcctctttctttcgccaagccaatgcacgccttaatagctgccatggacgtcact 298
           |||  ||  || || || ||||||| ||||||  ||||||||| || ||| || ||||||
Sbjct: 929 tttcttctcctgtccttagccaagctaatgcattccttaatagttgtcatagatgtcact 870

                                                                       
Query: 299 ccacctccaggtttttgtattgacactaagcggcccgaagaatctagaacaactgtcaca 358
            |||||||||||||||||||||||||||   || | |||||||| |||||||  ||||||
Sbjct: 869 gcacctccaggtttttgtattgacactatctggtctgaagaatcgagaacaatagtcaca 810

                                                                       
Query: 359 gaggtctctattatcgattcttcttcagcagttgggtccactagaatactatccttgtgg 418
           || ||||||||||| |||||||||||||||||||| ||| |||||| | |||||||||| 
Sbjct: 809 gaagtctctattattgattcttcttcagcagttggatccgctagaacattatccttgtga 750

                                                                       
Query: 419 agtgcacatgtgagaggaaatggaatgtcaccaagagtaagcttccttttttctctgttt 478
           ||||||||||| || | ||||||||  | |  ||  ||||||||||| ||||||||||||
Sbjct: 749 agtgcacatgtaagggaaaatggaacattagtaatcgtaagcttcctcttttctctgttt 690

                                                                   
Query: 479 accaattcatatttggttttgccttcattgcctccaacagtaaacaccctaccatc 534
           |||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||
Sbjct: 689 accaattcatatttggctttgccttcattgcccccaacagtaaatactctaccatc 634
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>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046A04, complete sequence
          Length = 141001

 Score =  242 bits (122), Expect = 1e-60
 Identities = 227/262 (86%)
 Strand = Plus / Minus

                                                                         
Query: 273   ccttaatagctgccatggacgtcactccacctccaggtttttgtattgacactaagcggc 332
             ||||||||| || ||| || |||||| |||||||||||||||||||||||||||   || 
Sbjct: 88599 ccttaatagttgtcatagatgtcactgcacctccaggtttttgtattgacactatctggt 88540

                                                                         
Query: 333   ccgaagaatctagaacaactgtcacagaggtctctattatcgattcttcttcagcagttg 392
             | |||||||| |||||||  |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 88539 ctgaagaatcgagaacaatagtcacagaagtctctattattgattcttcttcagcagttg 88480

                                                                         
Query: 393   ggtccactagaatactatccttgtggagtgcacatgtgagaggaaatggaatgtcaccaa 452
             | ||| |||||| | |||||||||| ||||||||||| || | ||||||||  | |  ||
Sbjct: 88479 gatccgctagaacattatccttgtgaagtgcacatgtaagggaaaatggaacattagtaa 88420

                                                                         
Query: 453   gagtaagcttccttttttctctgtttaccaattcatatttggttttgccttcattgcctc 512
               ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 88419 tcgtaagcttcctcttttctctgtttaccaattcatatttggctttgccttcattgcccc 88360

                                   
Query: 513   caacagtaaacaccctaccatc 534
             |||||||||| || ||||||||
Sbjct: 88359 caacagtaaatactctaccatc 88338



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 179   acttattcagcttggtcgacttccattgcttcaa 212
             ||||| |||| |||||||||||||||||||||||
Sbjct: 89245 acttaatcagtttggtcgacttccattgcttcaa 89212
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>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0007C02, complete sequence
          Length = 148265

 Score =  242 bits (122), Expect = 1e-60
 Identities = 227/262 (86%)
 Strand = Plus / Plus

                                                                        
Query: 273  ccttaatagctgccatggacgtcactccacctccaggtttttgtattgacactaagcggc 332
            ||||||||| || ||| || |||||| |||||||||||||||||||||||||||   || 
Sbjct: 7590 ccttaatagttgtcatagatgtcactgcacctccaggtttttgtattgacactatctggt 7649

                                                                        
Query: 333  ccgaagaatctagaacaactgtcacagaggtctctattatcgattcttcttcagcagttg 392
            | |||||||| |||||||  |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 7650 ctgaagaatcgagaacaatagtcacagaagtctctattattgattcttcttcagcagttg 7709

                                                                        
Query: 393  ggtccactagaatactatccttgtggagtgcacatgtgagaggaaatggaatgtcaccaa 452
            | ||| |||||| | |||||||||| ||||||||||| || | ||||||||  | |  ||
Sbjct: 7710 gatccgctagaacattatccttgtgaagtgcacatgtaagggaaaatggaacattagtaa 7769

                                                                        
Query: 453  gagtaagcttccttttttctctgtttaccaattcatatttggttttgccttcattgcctc 512
              ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 7770 tcgtaagcttcctcttttctctgtttaccaattcatatttggctttgccttcattgcccc 7829

                                  
Query: 513  caacagtaaacaccctaccatc 534
            |||||||||| || ||||||||
Sbjct: 7830 caacagtaaatactctaccatc 7851



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 179  acttattcagcttggtcgacttccattgcttcaa 212
            ||||| |||| |||||||||||||||||||||||
Sbjct: 6944 acttaatcagtttggtcgacttccattgcttcaa 6977
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  242 bits (122), Expect = 1e-60
 Identities = 227/262 (86%)
 Strand = Plus / Minus

                                                                            
Query: 273      ccttaatagctgccatggacgtcactccacctccaggtttttgtattgacactaagcggc 332
                ||||||||| || ||| || |||||| |||||||||||||||||||||||||||   || 
Sbjct: 11886872 ccttaatagttgtcatagatgtcactgcacctccaggtttttgtattgacactatctggt 11886813

                                                                            
Query: 333      ccgaagaatctagaacaactgtcacagaggtctctattatcgattcttcttcagcagttg 392
                | |||||||| |||||||  |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 11886812 ctgaagaatcgagaacaatagtcacagaagtctctattattgattcttcttcagcagttg 11886753

                                                                            
Query: 393      ggtccactagaatactatccttgtggagtgcacatgtgagaggaaatggaatgtcaccaa 452
                | ||| |||||| | |||||||||| ||||||||||| || | ||||||||  | |  ||
Sbjct: 11886752 gatccgctagaacattatccttgtgaagtgcacatgtaagggaaaatggaacattagtaa 11886693

                                                                            
Query: 453      gagtaagcttccttttttctctgtttaccaattcatatttggttttgccttcattgcctc 512
                  ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 11886692 tcgtaagcttcctcttttctctgtttaccaattcatatttggctttgccttcattgcccc 11886633

                                      
Query: 513      caacagtaaacaccctaccatc 534
                |||||||||| || ||||||||
Sbjct: 11886632 caacagtaaatactctaccatc 11886611



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 179      acttattcagcttggtcgacttccattgcttcaa 212
                ||||| |||| |||||||||||||||||||||||
Sbjct: 11887518 acttaatcagtttggtcgacttccattgcttcaa 11887485
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  242 bits (122), Expect = 1e-60
 Identities = 227/262 (86%)
 Strand = Plus / Minus

                                                                            
Query: 273      ccttaatagctgccatggacgtcactccacctccaggtttttgtattgacactaagcggc 332
                ||||||||| || ||| || |||||| |||||||||||||||||||||||||||   || 
Sbjct: 11965279 ccttaatagttgtcatagatgtcactgcacctccaggtttttgtattgacactatctggt 11965220

                                                                            
Query: 333      ccgaagaatctagaacaactgtcacagaggtctctattatcgattcttcttcagcagttg 392
                | |||||||| |||||||  |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 11965219 ctgaagaatcgagaacaatagtcacagaagtctctattattgattcttcttcagcagttg 11965160

                                                                            
Query: 393      ggtccactagaatactatccttgtggagtgcacatgtgagaggaaatggaatgtcaccaa 452
                | ||| |||||| | |||||||||| ||||||||||| || | ||||||||  | |  ||
Sbjct: 11965159 gatccgctagaacattatccttgtgaagtgcacatgtaagggaaaatggaacattagtaa 11965100

                                                                            
Query: 453      gagtaagcttccttttttctctgtttaccaattcatatttggttttgccttcattgcctc 512
                  ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 11965099 tcgtaagcttcctcttttctctgtttaccaattcatatttggctttgccttcattgcccc 11965040

                                      
Query: 513      caacagtaaacaccctaccatc 534
                |||||||||| || ||||||||
Sbjct: 11965039 caacagtaaatactctaccatc 11965018



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 179      acttattcagcttggtcgacttccattgcttcaa 212
                ||||| |||| |||||||||||||||||||||||
Sbjct: 11965925 acttaatcagtttggtcgacttccattgcttcaa 11965892
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>gb|AY111331.1| Zea mays CL47623_1 mRNA sequence
          Length = 547

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 121/150 (80%)
 Strand = Plus / Plus

                                                                       
Query: 248 ctttctttcgccaagccaatgcacgccttaatagctgccatggacgtcactccacctcca 307
           |||||||||||||||| ||||||| ||||||||| ||||||||| | ||||   ||||||
Sbjct: 247 ctttctttcgccaagctaatgcactccttaataggtgccatggatggcactgggcctcca 306

                                                                       
Query: 308 ggtttttgtattgacactaagcggcccgaagaatctagaacaactgtcacagaggtctct 367
                  | | |||||||| |||| | |||||||| |  ||||| | |||| ||||||||
Sbjct: 307 acnnnnngnaatgacactaggcgggctgaagaatcaacgacaacaggcacataggtctct 366

                                         
Query: 368 attatcgattcttcttcagcagttgggtcc 397
           || || ||||||||||||| ||||||||||
Sbjct: 367 ataattgattcttcttcagaagttgggtcc 396
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>gb|AC147018.4| Mus musculus BAC clone RP23-284H11 from chromosome 10, complete
            sequence
          Length = 182735

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 9    gaaacaaacttggaaaaataa 29
            |||||||||||||||||||||
Sbjct: 4573 gaaacaaacttggaaaaataa 4593
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>emb|AL049559.2|SPCC1450 S.pombe chromosome III cosmid c1450
          Length = 47381

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 495  ttttgccttcattgcctccaa 515
            |||||||||||||||||||||
Sbjct: 3266 ttttgccttcattgcctccaa 3246
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>gb|AC161423.1| Mus musculus BAC clone RP23-291E12 from chromosome 16, complete sequence
          Length = 226870

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 226    tatttccttcaacttttgtcctctt 250
              |||||||||||| ||||||||||||
Sbjct: 109829 tatttccttcaagttttgtcctctt 109853
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>gb|AC122024.6| Mus musculus BAC clone RP24-378K7 from chromosome 10, complete sequence
          Length = 183904

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     gaaacaaacttggaaaaataa 29
             |||||||||||||||||||||
Sbjct: 96501 gaaacaaacttggaaaaataa 96521
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>ref|NM_001023291.1| Schizosaccharomyces pombe 972h- transcriptional regulator
            (SPCC191.13), partial mRNA
          Length = 1737

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 495  ttttgccttcattgcctccaa 515
            |||||||||||||||||||||
Sbjct: 1260 ttttgccttcattgcctccaa 1240
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>gb|AC131683.4| Mus musculus BAC clone RP23-359C21 from 16, complete sequence
          Length = 200615

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 226    tatttccttcaacttttgtcctctt 250
              |||||||||||| ||||||||||||
Sbjct: 145459 tatttccttcaagttttgtcctctt 145483
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>emb|AJ224984.1|PDU224984 Platynereis dumerilii mRNA for wee1-like kinase
          Length = 3899

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 206 gcttcaatggagtccgtgagt 226
           |||||||||||||||||||||
Sbjct: 215 gcttcaatggagtccgtgagt 235
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>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4,
              complete sequence
          Length = 302156

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      aggaaacaaacttggaaaaa 26
              ||||||||||||||||||||
Sbjct: 213269 aggaaacaaacttggaaaaa 213288
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>emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on chromosome 1, complete
             sequence
          Length = 250586

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   ttccttttttctctgtttac 480
             ||||||||||||||||||||
Sbjct: 58501 ttccttttttctctgtttac 58482
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>gb|AC127254.3| Mus musculus BAC clone RP24-290D19 from chromosome 9, complete sequence
          Length = 187995

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    gagaggaaatggaatgtcac 449
              ||||||||||||||||||||
Sbjct: 167304 gagaggaaatggaatgtcac 167285
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>gb|AF038606.1| Caenorhabditis elegans cosmid C04C3, complete sequence
          Length = 43947

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   gagtatttccttcaactttt 242
             ||||||||||||||||||||
Sbjct: 12780 gagtatttccttcaactttt 12761
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>gb|AC107611.6| Rattus norvegicus 10 BAC CH230-195I24 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 211076

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    ctccacctccaggtttttgt 316
              ||||||||||||||||||||
Sbjct: 118685 ctccacctccaggtttttgt 118666
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>emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chromosome 6, complete
              sequence
          Length = 169159

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    gtcactccacctccaggttt 312
              ||||||||||||||||||||
Sbjct: 131560 gtcactccacctccaggttt 131579
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>emb|AL390834.24| Human DNA sequence from clone RP11-468L18 on chromosome 10 Contains an
             unactive progesterone receptor, 23 kD (TEBP) pseudogene,
             complete sequence
          Length = 124557

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   gtcactccacctccaggttt 312
             ||||||||||||||||||||
Sbjct: 62206 gtcactccacctccaggttt 62187
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>gb|AC087354.13| Homo sapiens chromosome 8, clone RP11-398H6, complete sequence
          Length = 184610

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aaatcaggaaacaaacttggaaaa 25
             |||||||||||||||||| |||||
Sbjct: 75789 aaatcaggaaacaaacttagaaaa 75812
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>emb|AL645744.16| Mouse DNA sequence from clone RP23-148E7 on chromosome 1 Contains the
             Icos gene for inducible T-cell co-stimulator, complete
             sequence
          Length = 108015

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   ttccttttttctctgtttac 480
             ||||||||||||||||||||
Sbjct: 95745 ttccttttttctctgtttac 95764
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>gb|AF187000.4| Homo sapiens chromosome 8 clone RP1-316L14 map 8q24.2, complete
             sequence
          Length = 129679

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ctagaaaaataatcccacag 108
             ||||||||||||||||||||
Sbjct: 81252 ctagaaaaataatcccacag 81233
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>emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chromosome 1 Contains a
             ribosomal protein L17 (RPL17) pseudogene and a tigger
             transposable element derived 1 (TIGD1) pseudogene,
             complete sequence
          Length = 129519

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   ttccttttttctctgtttac 480
             ||||||||||||||||||||
Sbjct: 49315 ttccttttttctctgtttac 49334
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>gb|AC090093.7| Homo sapiens chromosome 8, clone RP11-656A10, complete sequence
          Length = 167115

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aaatcaggaaacaaacttggaaaa 25
             |||||||||||||||||| |||||
Sbjct: 10270 aaatcaggaaacaaacttagaaaa 10293
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>gb|AC063965.8| Homo sapiens chromosome 10 clone RP11-380G5, complete sequence
          Length = 201536

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 452   agagtaagcttccttttttctctgttta 479
             |||| |||||| ||||||||||||||||
Sbjct: 66033 agagaaagctttcttttttctctgttta 66060
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>gb|AC008087.11| Homo sapiens chromosome 17, clone RP5-1127L24, complete sequence
          Length = 104726

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 495   ttttgccttcattgcctccaacag 518
             |||| |||||||||||||||||||
Sbjct: 73097 ttttcccttcattgcctccaacag 73120
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>gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 182247

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     tagaaaaataatcccacagttaaa 113
              |||||||| |||||||||||||||
Sbjct: 175841 tagaaaaaaaatcccacagttaaa 175864
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>gb|AC100872.2| Homo sapiens chromosome 8, clone RP11-973F15, complete sequence
          Length = 195563

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ctagaaaaataatcccacag 108
             ||||||||||||||||||||
Sbjct: 87430 ctagaaaaataatcccacag 87411
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>gb|AF258545.2| Homo sapiens chromosome 17 clone PAC P579 HC90, HC71AC, HC6 and HC56
             genes, complete sequence
          Length = 116004

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   ttttgccttcattgcctccaacag 518
             |||| |||||||||||||||||||
Sbjct: 87228 ttttcccttcattgcctccaacag 87205
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>gb|AC011712.6|AC011712 Homo sapiens chromosome 18, clone RP11-188I24, complete sequence
          Length = 145165

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    gagtatttccttcaactttt 242
              ||||||||||||||||||||
Sbjct: 103367 gagtatttccttcaactttt 103348
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>gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromosome 7, complete
             sequence
          Length = 223086

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   agcttccttttttctctgtt 477
             ||||||||||||||||||||
Sbjct: 83972 agcttccttttttctctgtt 83953
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>gb|AF258547.1|AF258547 Homo sapiens chromosome 17 unknown sequence
          Length = 52586

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   ttttgccttcattgcctccaacag 518
             |||| |||||||||||||||||||
Sbjct: 23810 ttttcccttcattgcctccaacag 23787
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>gb|AC027455.22| Homo sapiens chromosome 17, clone RP11-411G7, complete sequence
          Length = 145410

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 495    ttttgccttcattgcctccaacag 518
              |||| |||||||||||||||||||
Sbjct: 119652 ttttcccttcattgcctccaacag 119675
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>gb|AC009302.2| Homo sapiens BAC clone RP11-71J24 from 2, complete sequence
          Length = 180970

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aggaaacaaacttggaaaaa 26
             ||||||||||||||||||||
Sbjct: 30404 aggaaacaaacttggaaaaa 30423
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>gb|AC128711.4| Homo sapiens 3 BAC RP11-70N22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94869

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 465   ttttttctctgtttaccaattcat 488
             |||||||||||||| |||||||||
Sbjct: 28091 ttttttctctgttttccaattcat 28114
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>emb|CT030129.9| Zebrafish DNA sequence from clone CH73-314G15 in linkage group 7,
            complete sequence
          Length = 102729

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 313  ttgtattgacactaagcggc 332
            ||||||||||||||||||||
Sbjct: 2800 ttgtattgacactaagcggc 2781
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>gb|AF067844.1|AF067844 Homo sapiens chromosome 10 clone PTEN, complete sequence
          Length = 218336

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 452    agagtaagcttccttttttctctgttta 479
              |||| |||||| ||||||||||||||||
Sbjct: 140686 agagaaagctttcttttttctctgttta 140659
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>gb|AC025500.8| Mus musculus chromosome 9, clone RP23-47M24, complete sequence
          Length = 112924

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   gagaggaaatggaatgtcac 449
             ||||||||||||||||||||
Sbjct: 12363 gagaggaaatggaatgtcac 12344


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,672,588
Number of Sequences: 3902068
Number of extensions: 5672588
Number of successful extensions: 111115
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110954
Number of HSP's gapped (non-prelim): 153
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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