ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38f11 |
|---|---|
| Clone Library Name | barley_pub |
>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)| ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) Length = 461 Score = 90.5 bits (223), Expect = 2e-18 Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Frame = -2 Query: 464 PGPEPE---GPSWCVANAAVGDGRLRDALDYACGHGADCSGIQPGGWCFDPNTMVAHASY 294 P P+P G WCVA L++ ++YACG DC IQ GG CF PN++ AHASY Sbjct: 365 PSPKPAPSGGGKWCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASY 423 Query: 293 AFNDYYQRNGRSEEACRFGGCGSVVHQQPRFGNC 192 N YYQ NG ++ AC F G G V P +G C Sbjct: 424 VMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457
>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 402 Score = 86.7 bits (213), Expect = 3e-17 Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Frame = -2 Query: 440 SWCVANAAVGDGRLRDALDYACGHG-ADCSGIQPGGWCFDPNTMVAHASYAFNDYYQRNG 264 ++C+A V L+ ALD+ACG G ++CS IQPG C+ PN + HAS+AFN YYQ+ G Sbjct: 271 TYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEG 330 Query: 263 RSEEACRFGGCGSVVHQQPRFGNCVLPQWRDGLKRLG 153 R+ +C F G + P G+C+ P G K++G Sbjct: 331 RASGSCDFKGVAMITTTDPSHGSCIFP----GSKKVG 363
>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 501 Score = 81.6 bits (200), Expect = 9e-16 Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Frame = -2 Query: 440 SWCVANAAVGDGRLRDALDYACGHG-ADCSGIQPGGWCFDPNTMVAHASYAFNDYYQRNG 264 ++C+A V L+ ALD+ACG G DCS + G C++P+ +VAH++YAFN YYQ+ G Sbjct: 359 TFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMG 418 Query: 263 RSEEACRFGGCGSVVHQQPRFGNCVLP 183 ++ +C F G +V P G CV P Sbjct: 419 KASGSCDFKGVATVTTTDPSRGTCVFP 445
>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 505 Score = 77.0 bits (188), Expect = 2e-14 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Frame = -2 Query: 437 WCVANAAVGDGRLRDALDYACGHG-ADCSGIQPGGWCFDPNTMVAHASYAFNDYYQRNGR 261 +CVA A D +L D L++ACG G A+C+ IQPG C+ PN + +HAS+AFNDYYQ+ Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKS 421 Query: 260 SEEACRFGGCGSVVHQQPRFGNC 192 + C F G + P + C Sbjct: 422 AGGTCDFDGTAITTTRDPSYRTC 444
>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 484 Score = 61.6 bits (148), Expect = 1e-09 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Frame = -2 Query: 437 WCVA--NAAVGDGRLRDALDYACGHGADCSGIQPGGWCFDPNTMVAHASYAFNDYYQRNG 264 WC+ NA + D +L ++ YAC H ADC+ + G C + N + + SYAFN YYQ + Sbjct: 365 WCILAPNANLQDPQLGPSVSYACDH-ADCTSLGYGSSCGNLN-LAQNVSYAFNSYYQVSN 422 Query: 263 RSEEACRFGGCGSVVHQQPRFGNC 192 + + AC+F G V + P G+C Sbjct: 423 QLDSACKFPGLSIVSTRDPSVGSC 446
>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 477 Score = 52.8 bits (125), Expect = 4e-07 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Frame = -2 Query: 437 WCVA--NAAVGDGRLRDALDYACGHGADCSGIQPGGWCFDPNTMVAHASYAFNDYYQRNG 264 WCV N + D ++ A+ YAC G DC+ + G C + + + SYAFN YYQ Sbjct: 362 WCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCANLDGK-QNISYAFNSYYQIQD 419 Query: 263 RSEEACRFGGCGSVVHQQPRFGNCVLP 183 + + AC+F V P G C P Sbjct: 420 QLDTACKFPNISEVTKTDPSTGTCRFP 446
>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Anther-specific protein A6) Length = 478 Score = 52.8 bits (125), Expect = 4e-07 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Frame = -2 Query: 464 PGPEP------EGPSWCVANAAVGDGRLRDALDYACGHG-ADCSGIQPGGWCFDPNTMVA 306 P P+P +G WCV + L + L AC C+ + PG C++P ++ Sbjct: 374 PLPKPTNNVPYKGQVWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYW 433 Query: 305 HASYAFNDYYQRNGRSEEACRFGGCGSVVHQQPRFGNCVLP 183 HASYA N Y+ + C F G P C P Sbjct: 434 HASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKFP 474
>PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regulated protein 2)| Length = 546 Score = 40.4 bits (93), Expect = 0.002 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Frame = -2 Query: 434 CVANAAVGDGRLRDALDYACGHGADCSGIQPGGW-----CFDPNTMVAHASYAFNDYYQR 270 CV + V D Y C DC GI G + P S+ N YY++ Sbjct: 380 CVVDDKVDSDDYSDLFSYICAK-IDCDGINANGTTGEYGAYSPCHSKDKLSFVMNLYYEQ 438 Query: 269 NGRSEEACRFGGCGSV 222 N S+ AC FGG S+ Sbjct: 439 NKESKSACDFGGSASL 454
>EPD1_CANMA (P56092) Protein EPD1 precursor (Essential for pseudohyphal| development 1) Length = 549 Score = 36.6 bits (83), Expect = 0.033 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Frame = -2 Query: 434 CVANAAVGDGRLRDALDYACGHGADCSGIQPGGW-----CFDPNTMVAHASYAFNDYYQR 270 CV V D DY C DCSGI + P S+ N YY+ Sbjct: 378 CVVADNVSTDDYSDLFDYVCAK-IDCSGINANATTGDYGAYSPCGAKDKLSFVLNLYYEE 436 Query: 269 NGRSEEACRFGGCGSV 222 S+ AC F G S+ Sbjct: 437 QNESKSACDFSGSASL 452
>PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regulated protein 1)| Length = 548 Score = 35.0 bits (79), Expect = 0.095 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Frame = -2 Query: 434 CVANAAVGDGRLRDALDYACGHGADCSGIQPGG---------WCFDPNTMVAHASYAFND 282 CV V D CG+ DCS I G +C D + + SY N Sbjct: 390 CVVADDVDKEDYGDLFGQVCGY-IDCSAISADGSKGEYGVASFCSDKDRL----SYVLNQ 444 Query: 281 YYQRNGRSEEACRFGGCGSVVHQQPRFGNC 192 YY + AC F G S+ + G+C Sbjct: 445 YYLDQDKKSSACDFKGSASINSKASASGSC 474
>GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precursor| (Glycoprotein GP115) Length = 559 Score = 32.7 bits (73), Expect = 0.47 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Frame = -2 Query: 434 CVANAAVGDGRLRDALDYACGHGADCSGIQPGGWC-----FDPNTMVAHASYAFNDYYQR 270 CV + V ++ C DCSGI G + T S+ N YY++ Sbjct: 379 CVVSDDVDSDDYETLFNWICNE-VDCSGISANGTAGKYGAYSFCTPKEQLSFVMNLYYEK 437 Query: 269 NGRSEEACRFGGCGSV 222 +G S+ C F G ++ Sbjct: 438 SGGSKSDCSFSGSATL 453
>SYI_BLOFL (Q7VQL0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 953 Score = 31.2 bits (69), Expect = 1.4 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 353 GIQPGGWCFDPNTMVAHASYAFNDYYQRN 267 GI+P WCF ++ +A++ +NDY+ N Sbjct: 183 GIKPVYWCFQCHSALANSEVEYNDYHYSN 211
>VTER_EBV (P03219) Probable DNA packaging protein| Length = 690 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -2 Query: 260 SEEACRFGGCGSVVHQQPRFGNCVLPQWRDGLKRLGGPPYVQLSQDL 120 S+E+ G +H + C+LP+ RD L+RL PP ++ S+ L Sbjct: 79 SDESLPMFGASPALHTPVQVQMCLLPELRDTLQRLLPPPNLEDSEAL 125
>EPD2_CANMA (O74137) Protein EPD2 precursor (Essential for pseudohyphal| development 2) Length = 549 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 15/73 (20%) Frame = -2 Query: 395 DALDYA------CGHGADCSGIQPGG---------WCFDPNTMVAHASYAFNDYYQRNGR 261 DA DY+ CG+ DC I G +C D + + SY N YY Sbjct: 397 DAEDYSTLFGEVCGY-IDCGDISANGNTGEYGGFSFCSDKDRL----SYVLNQYYHDQNE 451 Query: 260 SEEACRFGGCGSV 222 +AC F G S+ Sbjct: 452 RADACDFAGSASI 464
>GLN12_ORYSA (P14654) Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2)| (OsGLN1;2) (OsGS1;2) (Glutamate--ammonia ligase GLN1;2) (Glutamine synthetase root isozyme) Length = 357 Score = 30.4 bits (67), Expect = 2.3 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSGI----QPGGWCFDPNTMVAHAS 297 P P+GP +C A A GR + DA AC + G + SGI PG W F V A+ Sbjct: 151 PGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAA 210
>GLNA2_MAIZE (P38560) Glutamine synthetase root isozyme 2 (EC 6.3.1.2)| (Glutamate--ammonia ligase) Length = 368 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSGI----QPGGWCF 327 P P+GP +C A A GR + D AC + G D SGI PG W F Sbjct: 150 PGPQGPYYCAAGADKSYGRDIVDCAYKACLYAGIDISGINGEVMPGQWEF 199
>POL1_CNSV (Q8QVV0) RNA1 polyprotein (P1) [Contains: P1A protein (1A)| (Protease cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (Membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like pr Length = 2336 Score = 24.6 bits (52), Expect(2) = 2.8 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = -2 Query: 209 PRFGNCVLPQWRDGLKRLGGPP 144 P +C+ P+W G++R+ G P Sbjct: 85 PTVPSCLAPKWMLGIQRVEGAP 106 Score = 23.9 bits (50), Expect(2) = 2.8 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%) Frame = -2 Query: 338 GWCFDPNTMVAHASYAFNDYYQRNGRSEEACRFGGCGSV-----VHQQP 207 GW + + H S N R GR E A CGS+ V QQP Sbjct: 2 GWICPNVSCLGHTSVLSNKEISREGRCERAM----CGSLLVKVAVPQQP 46
>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)| Length = 3460 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Frame = -2 Query: 464 PGPEPEGPSWCVANAAVGDGRLRDALDYACGHGADCSG-----IQPGG-WCFDPNT 315 P P + +W + N +GDG +D GHG G Q GG +C DP T Sbjct: 2461 PAPFDKQQTWAIDNVYIGDG----CIDMCSGHGRCIQGNCVCDEQWGGLYCDDPET 2512
>GLNA2_DAUCA (O22506) Glutamine synthetase, chloroplast precursor (EC 6.3.1.2)| (Glutamate--ammonia ligase) (GS2) Length = 432 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSG----IQPGGWCF 327 P P+GP +C A A GR + DA AC + G + SG + PG W F Sbjct: 211 PGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEF 260
>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)| Length = 3461 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Frame = -2 Query: 464 PGPEPEGPSWCVANAAVGDGRLRDALDYACGHGADCSGI-----QPGG-WCFDPNT 315 P P + +W + N +GDG LD GHG G Q GG +C +P T Sbjct: 2462 PAPFDKQQTWAIDNVYIGDG----CLDMCSGHGRCVQGSCVCDEQWGGLYCDEPET 2513
>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)| Length = 3462 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Frame = -2 Query: 464 PGPEPEGPSWCVANAAVGDGRLRDALDYACGHGADCSGI-----QPGG-WCFDPNT 315 P P + +W + N +GDG LD GHG G Q GG +C +P T Sbjct: 2463 PAPFDKQQTWAIDNVYIGDG----CLDMCSGHGRCIQGSCVCDEQWGGLYCDEPET 2514
>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2| Length = 1514 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/58 (25%), Positives = 25/58 (43%) Frame = -2 Query: 395 DALDYACGHGADCSGIQPGGWCFDPNTMVAHASYAFNDYYQRNGRSEEACRFGGCGSV 222 +++ +C + CS PG + D A + + ++ NG EE C GC V Sbjct: 298 NSVPQSCSDSSFCSHADPGAFYLDLQPSPAESRMSCESHHPENGDREEGC---GCPHV 352
>GLNA5_MAIZE (P38563) Glutamine synthetase root isozyme 5 (EC 6.3.1.2)| (Glutamate--ammonia ligase) (GS117) Length = 357 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSGI----QPGGWCF 327 P P+GP +C A A GR + DA AC + G + SGI PG W F Sbjct: 151 PGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEF 200
>GLNA2_PEA (P08281) Glutamine synthetase leaf isozyme, chloroplast precursor| (EC 6.3.1.2) (Glutamate--ammonia ligase) (Chloroplast GS2) Length = 430 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSG----IQPGGW 333 P P+GP +C A A GR + DA AC + G + SG + PG W Sbjct: 209 PGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQW 256
>GLNA1_MAIZE (P38559) Glutamine synthetase root isozyme 1 (EC 6.3.1.2)| (Glutamate--ammonia ligase) (GS122) Length = 357 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSGI----QPGGWCF 327 P P+GP +C A A GR + DA AC + G + SGI PG W F Sbjct: 151 PGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEF 200
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/39 (38%), Positives = 18/39 (46%) Frame = +1 Query: 148 GPPNRLSPSRHCGSTQLPNLGCWWTTEPQPPKRQASSDR 264 GPP P R CG CWW P+P +R +DR Sbjct: 1608 GPP----PCRRCGHRCWL---CWWRRGPRPRRRPGLTDR 1639
>GLNA2_MEDSA (Q9XQ94) Glutamine synthetase leaf isozyme, chloroplast precursor| (EC 6.3.1.2) (Glutamate--ammonia ligase) (Chloroplast GS2) Length = 428 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Frame = -2 Query: 458 PEPEGPSWCVANAAVGDGR-LRDALDYACGH-GADCSG----IQPGGW 333 P P+GP +C A A GR + DA AC + G + SG + PG W Sbjct: 207 PGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQW 254
>POLG_HCVVO (O92531) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3015 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -2 Query: 452 PEGPSWCVANAAVGDGRLRDALDYACGHGADCSGIQPGGWC 330 P P+ VANA+V R +D G A CS + G C Sbjct: 240 PVAPTLAVANASVPIRGFRSHVDLLVGSAAACSALYIGDLC 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,685,332 Number of Sequences: 219361 Number of extensions: 940437 Number of successful extensions: 2423 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2418 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
