ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
2dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
3ref|XM_469741.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 6e-06
5gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 60 6e-06
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
7dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
8ref|XM_476748.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
10dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
11ref|XM_478715.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
12dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
13dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of... 46 0.092
15gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 44 0.36
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.36
17gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.36
18gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.4
19ref|XM_476749.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
20gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynth... 42 1.4
21dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.4
22dbj|AK110469.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
23emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.4
24ref|NM_193622.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
25gb|AF003137.1| Caenorhabditis elegans cosmid C27A12, complete se... 40 5.6
26emb|CR680878.1|CNS0FOBE Tetraodon nigroviridis full-length cDNA 40 5.6
27emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigrovi... 40 5.6
28gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.6
29gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.6
30emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence 40 5.6
31dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
32dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.6
33dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
34emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.6
35gb|AY103687.1| Zea mays PCO106710 mRNA sequence 40 5.6
36gb|AY104176.1| Zea mays PCO083783 mRNA sequence 40 5.6

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  327 bits (165), Expect = 2e-86
 Identities = 273/309 (88%)
 Strand = Plus / Minus

                                                                           
Query: 113     ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 172
               ||||| ||||| || |||||||| |||||||||||||||||    ||||| ||||| |||
Sbjct: 4287941 ttgacacgaatgacttggccgttgatccacccggcggcgtcggtgcagaggaagcccacc 4287882

                                                                           
Query: 173     accggcgccacgtccgccggctcgccgatgcgcttcatggggcactcgctggcgacggcc 232
               |||||||||||||||  |||||||||||| |||  ||| |||||||||| ||||||||| 
Sbjct: 4287881 accggcgccacgtccatcggctcgccgatccgccccatcgggcactcgccggcgacggca 4287822

                                                                           
Query: 233     ctcacgcgctcctcggacttcccggcgtaaaacatgggcgtggcgaccggccccggcgcc 292
                  ||||||||||||  ||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 4287821 gcgacgcgctcctcgctcttgccggcgtagaacatcggcgtcgcgaccggccccggcgcc 4287762

                                                                           
Query: 293     acgctgttggccgtgatgcccgtcccggcgagctccttggccagcaccttggtcatcgcc 352
               |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4287761 acgctgttcgccgtgatccccgtcccggcgagctccttggccagcaccttcgtcatcgcc 4287702

                                                                           
Query: 353     tccacggccgccttcgtcgccacgtacgcgccatagcctggccggagcgaccccacgttc 412
               ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 4287701 tccaccgccgccttcgtcgccacgtacgcgccgtacccgggccggagggaccccacgttg 4287642

                        
Query: 413     gacgacgag 421
               |||||||||
Sbjct: 4287641 gacgacgag 4287633



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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0554A06
          Length = 165311

 Score =  327 bits (165), Expect = 2e-86
 Identities = 273/309 (88%)
 Strand = Plus / Minus

                                                                          
Query: 113    ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 172
              ||||| ||||| || |||||||| |||||||||||||||||    ||||| ||||| |||
Sbjct: 133162 ttgacacgaatgacttggccgttgatccacccggcggcgtcggtgcagaggaagcccacc 133103

                                                                          
Query: 173    accggcgccacgtccgccggctcgccgatgcgcttcatggggcactcgctggcgacggcc 232
              |||||||||||||||  |||||||||||| |||  ||| |||||||||| ||||||||| 
Sbjct: 133102 accggcgccacgtccatcggctcgccgatccgccccatcgggcactcgccggcgacggca 133043

                                                                          
Query: 233    ctcacgcgctcctcggacttcccggcgtaaaacatgggcgtggcgaccggccccggcgcc 292
                 ||||||||||||  ||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 133042 gcgacgcgctcctcgctcttgccggcgtagaacatcggcgtcgcgaccggccccggcgcc 132983

                                                                          
Query: 293    acgctgttggccgtgatgcccgtcccggcgagctccttggccagcaccttggtcatcgcc 352
              |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 132982 acgctgttcgccgtgatccccgtcccggcgagctccttggccagcaccttcgtcatcgcc 132923

                                                                          
Query: 353    tccacggccgccttcgtcgccacgtacgcgccatagcctggccggagcgaccccacgttc 412
              ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 132922 tccaccgccgccttcgtcgccacgtacgcgccgtacccgggccggagggaccccacgttg 132863

                       
Query: 413    gacgacgag 421
              |||||||||
Sbjct: 132862 gacgacgag 132854



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>ref|XM_469741.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 399
           |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 561 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 502

                                 
Query: 400 cgaccccacgttcgacgacgag 421
           |||||| |||  ||||||||||
Sbjct: 501 cgacccgacgcccgacgacgag 480



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                            
Query: 340      cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 399
                |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 30496626 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 30496567

                                      
Query: 400      cgaccccacgttcgacgacgag 421
                |||||| |||  ||||||||||
Sbjct: 30496566 cgacccgacgcccgacgacgag 30496545



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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                         
Query: 340   cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 399
             |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 28199 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 28140

                                   
Query: 400   cgaccccacgttcgacgacgag 421
             |||||| |||  ||||||||||
Sbjct: 28139 cgacccgacgcccgacgacgag 28118



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                            
Query: 340      cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 399
                |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 30588048 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 30587989

                                      
Query: 400      cgaccccacgttcgacgacgag 421
                |||||| |||  ||||||||||
Sbjct: 30587988 cgacccgacgcccgacgacgag 30587967



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>dbj|AK108283.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D03, full
           insert sequence
          Length = 1022

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 cttggtcatcgcctccacggccgccttcgtcgccacgtacgcgccatagcctggccggag 399
           |||||||||| ||||||| ||||||||  ||||| |||||||  | || || ||||||||
Sbjct: 665 cttggtcatcacctccaccgccgccttgctcgccgcgtacgccgcgtaccccggccggag 606

                                 
Query: 400 cgaccccacgttcgacgacgag 421
           |||||| |||  ||||||||||
Sbjct: 605 cgacccgacgcccgacgacgag 584



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>ref|XM_476748.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 786

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 113 ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 172
           ||||| ||||||||||||||||| | |||| ||||||||||    ||||| |||||||||
Sbjct: 770 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 711

                
Query: 173 accgg 177
           |||||
Sbjct: 710 accgg 706



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 113     ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 172
               ||||| ||||||||||||||||| | |||| ||||||||||    ||||| |||||||||
Sbjct: 3744831 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 3744772

                    
Query: 173     accgg 177
               |||||
Sbjct: 3744771 accgg 3744767



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 99       acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
                ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 22363512 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 22363458



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 346      catcgcctccacggccgccttcgtcgccacgtacgcg 382
                ||||||||||||||||||||||| ||||  |||||||
Sbjct: 22363265 catcgcctccacggccgccttcgacgccgtgtacgcg 22363229



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 283      ccccggcgccacgctgttggccgtgatgc 311
                ||||||||| |||| ||||||||||||||
Sbjct: 22363328 ccccggcgcgacgcagttggccgtgatgc 22363300



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 101     acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
               ||||| || |||||||| || || |||||||||||  ||||| ||||||||||
Sbjct: 3745454 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 3745506



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>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0050F10
          Length = 151986

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 113   ttgacccgaatcacctggccgttaatccacccggcggcgtcaccacagagaaagccgacc 172
             ||||| ||||||||||||||||| | |||| ||||||||||    ||||| |||||||||
Sbjct: 89182 ttgactcgaatcacctggccgttgacccactcggcggcgtcggtgcagaggaagccgacc 89123

                  
Query: 173   accgg 177
             |||||
Sbjct: 89122 accgg 89118



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 101   acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
             ||||| || |||||||| || || |||||||||||  ||||| ||||||||||
Sbjct: 89805 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 89857



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>ref|XM_478715.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 798

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 99  acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
           ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 796 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 742



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 346 catcgcctccacggccgccttcgtcgccacgtacgcg 382
           ||||||||||||||||||||||| ||||  |||||||
Sbjct: 549 catcgcctccacggccgccttcgacgccgtgtacgcg 513



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 283 ccccggcgccacgctgttggccgtgatgc 311
           ||||||||| |||| ||||||||||||||
Sbjct: 612 ccccggcgcgacgcagttggccgtgatgc 584



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>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0567H04
          Length = 181420

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 99     acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
              ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 168758 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 168704



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 346    catcgcctccacggccgccttcgtcgccacgtacgcg 382
              ||||||||||||||||||||||| ||||  |||||||
Sbjct: 168511 catcgcctccacggccgccttcgacgccgtgtacgcg 168475



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 283    ccccggcgccacgctgttggccgtgatgc 311
              ||||||||| |||| ||||||||||||||
Sbjct: 168574 ccccggcgcgacgcagttggccgtgatgc 168546



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>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0406F06
          Length = 144533

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 99    acacgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
             ||||||| || ||||||||||| || ||||||||||| | |||| ||||||||||
Sbjct: 24579 acacgtacccgccgttgacccggatgacctggccgttgacccactcggcggcgtc 24525



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 346   catcgcctccacggccgccttcgtcgccacgtacgcg 382
             ||||||||||||||||||||||| ||||  |||||||
Sbjct: 24332 catcgcctccacggccgccttcgacgccgtgtacgcg 24296



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 283   ccccggcgccacgctgttggccgtgatgc 311
             ||||||||| |||| ||||||||||||||
Sbjct: 24395 ccccggcgcgacgcagttggccgtgatgc 24367



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>gb|AE005903.1| Caulobacter crescentus CB15 section 229 of 359 of the complete genome
          Length = 11684

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 273  tggcgaccggccccggcgccacg 295
            |||||||||||||||||||||||
Sbjct: 9869 tggcgaccggccccggcgccacg 9891



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 343     ggtcatcgcctccacggccgccttcg 368
               ||||||||| ||||||||||||||||
Sbjct: 1004067 ggtcatcgcttccacggccgccttcg 1004042



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 282    gccccggcgccacgctgttggccgtgat 309
              ||||||||||||||| |||| |||||||
Sbjct: 841860 gccccggcgccacgcagttgaccgtgat 841833



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 347    atcgcctccacggccgccttcg 368
              ||||||||||||||||||||||
Sbjct: 854306 atcgcctccacggccgccttcg 854327



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 280     cggccccggcgccacgctgttg 301
               ||||||||||||||||||||||
Sbjct: 3286018 cggccccggcgccacgctgttg 3285997



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 278    accggccccggcgccacgctg 298
              |||||||||||||||||||||
Sbjct: 602785 accggccccggcgccacgctg 602805



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>ref|XM_476749.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 798

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 101 acgtaaccaccgttgacccgaatcacctggccgttaatccacccggcggcgtc 153
           ||||| || |||||||| || || |||||||||||  ||||| ||||||||||
Sbjct: 791 acgtagccgccgttgacacgtatgacctggccgttggtccactcggcggcgtc 739



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>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster,
             complete sequence
          Length = 49461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 319   ggcgagctccttggccagcac 339
             |||||||||||||||||||||
Sbjct: 17352 ggcgagctccttggccagcac 17372



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 318     cggcgagctccttggccagcacctt 342
               |||||||||||||||||||| ||||
Sbjct: 6483473 cggcgagctccttggccagcgcctt 6483497



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 321    cgagctccttggccagcacct 341
              |||||||||||||||||||||
Sbjct: 964439 cgagctccttggccagcacct 964459



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>dbj|AK110469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-G12, full
            insert sequence
          Length = 3020

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 318  cggcgagctccttggccagca 338
            |||||||||||||||||||||
Sbjct: 2583 cggcgagctccttggccagca 2563



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 179     gccacgtccgccggctcgccgatgcgctt 207
               ||||| ||| |||||||||||||||||||
Sbjct: 2964840 gccacctcctccggctcgccgatgcgctt 2964868



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>ref|NM_193622.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 365 ttcgtcgccacgtacgcgcc 384
           ||||||||||||||||||||
Sbjct: 978 ttcgtcgccacgtacgcgcc 959



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>gb|AF003137.1| Caenorhabditis elegans cosmid C27A12, complete sequence
          Length = 31531

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ataacttttattaaacccga 28
             ||||||||||||||||||||
Sbjct: 21943 ataacttttattaaacccga 21924



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>emb|CR680878.1|CNS0FOBE Tetraodon nigroviridis full-length cDNA
          Length = 1525

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 325 ctccttggccagcaccttgg 344
           ||||||||||||||||||||
Sbjct: 198 ctccttggccagcaccttgg 179



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>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis
          Length = 265677

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   acgcgctcctcggacttccc 255
             ||||||||||||||||||||
Sbjct: 44909 acgcgctcctcggacttccc 44928



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 272    gtggcgaccggccccggcgccacg 295
              ||||| ||||||||||||||||||
Sbjct: 293230 gtggccaccggccccggcgccacg 293253



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    cagcaccttggtcatcgcct 353
              ||||||||||||||||||||
Sbjct: 276831 cagcaccttggtcatcgcct 276812



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>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence
          Length = 265677

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   acgcgctcctcggacttccc 255
             ||||||||||||||||||||
Sbjct: 44909 acgcgctcctcggacttccc 44928



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 365      ttcgtcgccacgtacgcgcc 384
                ||||||||||||||||||||
Sbjct: 22189012 ttcgtcgccacgtacgcgcc 22189031



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    agcctggccggagcgacccc 406
              ||||||||||||||||||||
Sbjct: 463864 agcctggccggagcgacccc 463845



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>dbj|AP003432.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1112D09
          Length = 125920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   ttcgtcgccacgtacgcgcc 384
             ||||||||||||||||||||
Sbjct: 84498 ttcgtcgccacgtacgcgcc 84517



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     ccggcgccacgtccgccggc 193
               ||||||||||||||||||||
Sbjct: 2030584 ccggcgccacgtccgccggc 2030603



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 325     ctccttggccagcaccttgg 344
               ||||||||||||||||||||
Sbjct: 1341871 ctccttggccagcaccttgg 1341852



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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 351 cctccacggccgccttcgtcgcca 374
           |||||||||||||||||| |||||
Sbjct: 119 cctccacggccgccttcgccgcca 142



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>gb|AY104176.1| Zea mays PCO083783 mRNA sequence
          Length = 1312

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 cgcctccacggccgccttcg 368
           ||||||||||||||||||||
Sbjct: 455 cgcctccacggccgccttcg 436


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,584,415
Number of Sequences: 3902068
Number of extensions: 2584415
Number of successful extensions: 51129
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49910
Number of HSP's gapped (non-prelim): 1212
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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