ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38f08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 420 gcagcggcacctggcggcgcag 441 |||||||||||||||||||||| Sbjct: 1062891 gcagcggcacctggcggcgcag 1062912
>emb|AL135789.18| Human DNA sequence from clone RP11-412H14 on chromosome 9q32-33.3 Contains the 5' end of one variant of the AKAP2 (PALM2) gene for A kinase (PRKA) anchor protein 2 (paralemmin 2) and a CpG island, complete sequence Length = 133394 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 ttaccacacaaacacacgcaca 291 |||||||||||||||||||||| Sbjct: 4253 ttaccacacaaacacacgcaca 4274
>gb|AC167169.2| Mus musculus BAC clone RP24-257G14 from chromosome 16, complete sequence Length = 150549 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 accacacaaacacacgcaca 291 |||||||||||||||||||| Sbjct: 125934 accacacaaacacacgcaca 125915
>gb|AC167171.2| Mus musculus BAC clone RP23-409H8 from chromosome 13, complete sequence Length = 203840 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tgattccatgtttaagtttt 41 |||||||||||||||||||| Sbjct: 112636 tgattccatgtttaagtttt 112617
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ccacacaaacacacgcacag 292 |||||||||||||||||||| Sbjct: 410231 ccacacaaacacacgcacag 410212
>gb|AF412432.1| Dendrobates ventrimaculatus clone DiShap cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product Length = 487 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 acaggcaatacattacatggatac 312 |||||| ||||||||||||||||| Sbjct: 441 acaggctatacattacatggatac 464
>gb|BT025208.1| Drosophila melanogaster FI01108 full insert cDNA Length = 2827 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 232 cacacaaacacacgcacagg 251
>gb|AC121850.3| Mus musculus BAC clone RP24-92E18 from chromosome 3, complete sequence Length = 195731 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 taccacacaaacacacgcac 290 |||||||||||||||||||| Sbjct: 27269 taccacacaaacacacgcac 27288
>gb|AC093620.3| Homo sapiens BAC clone RP13-901C16 from 7, complete sequence Length = 71183 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccacacaaacacacgcacag 292 |||||||||||||||||||| Sbjct: 32706 ccacacaaacacacgcacag 32725
>emb|AL669869.10| Mouse DNA sequence from clone RP23-198E14 on chromosome 11 Contains the 3' end of the Mgl2 gene for macrophage galactose N-acetyl-galactosamine specific lectin 2, the Mgl1 gene for macrophage galactose N-acetyl-galactosamine specific lectin 1, the gene for a novel RNA polymerase Rpb1 C-terminal repeat domain containing protein, three novel genes, the Bcl6b gene for B-cell CLL/lymphoma 6 member B, the Alox12 gene for arachidonate 12-lipoxygenase and four CpG islands, complete sequence Length = 174390 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 273 ccacacaaacacacgcacaggcaataca 300 |||||||||||||| |||||| |||||| Sbjct: 165634 ccacacaaacacacacacaggtaataca 165661
>emb|AL954726.31| Zebrafish DNA sequence from clone CH211-274A9 in linkage group 23, complete sequence Length = 164507 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 accacacaaacacacgcaca 291 |||||||||||||||||||| Sbjct: 162610 accacacaaacacacgcaca 162629
>emb|CR933731.5| Mouse DNA sequence from clone DN-160I24 on chromosome 11, complete sequence Length = 212982 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 273 ccacacaaacacacgcacaggcaataca 300 |||||||||||||| |||||| |||||| Sbjct: 145614 ccacacaaacacacacacaggtaataca 145641
>emb|CR394527.6| Zebrafish DNA sequence from clone CH211-254P11 in linkage group 5, complete sequence Length = 75514 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 accacacaaacacacgcaca 291 |||||||||||||||||||| Sbjct: 36530 accacacaaacacacgcaca 36549
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160440 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 acacacgcacaggcaataca 300 |||||||||||||||||||| Sbjct: 1630 acacacgcacaggcaataca 1611
>gb|AC023718.4| Drosophila melanogaster X BAC RP98-7P15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164415 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacaggcaat 297 |||||| ||||||||||||||||| Sbjct: 87338 cacacacacacacgcacaggcaat 87361
>gb|AC023681.5| Drosophila melanogaster X BAC RP98-39P3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 153733 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 acacacgcacaggcaataca 300 |||||||||||||||||||| Sbjct: 40871 acacacgcacaggcaataca 40890
>gb|AC106708.7| Homo sapiens 3 BAC RP11-392A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127109 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tgaccaacatccccaacaga 250 |||||||||||||||||||| Sbjct: 68840 tgaccaacatccccaacaga 68821
>gb|AY118309.1| Drosophila melanogaster GH14362 full insert cDNA Length = 3181 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacaggcaat 297 |||||| ||||||||||||||||| Sbjct: 201 cacacacacacacgcacaggcaat 178
>ref|NM_169080.1| Drosophila melanogaster Regena CG2161-RA, transcript variant A (Rga), mRNA Length = 2830 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 256 cacacaaacacacgcacagg 275
>ref|NM_167285.2| Drosophila melanogaster CG11727-RA, transcript variant A (CG11727), mRNA Length = 3511 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacaggcaat 297 |||||| ||||||||||||||||| Sbjct: 201 cacacacacacacgcacaggcaat 178
>gb|AY094772.1| Drosophila melanogaster GM14102 full insert cDNA Length = 2824 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 232 cacacaaacacacgcacagg 251
>ref|NM_132488.3| Drosophila melanogaster CG11727-RB, transcript variant B (CG11727), mRNA Length = 3166 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacaggcaat 297 |||||| ||||||||||||||||| Sbjct: 201 cacacacacacacgcacaggcaat 178
>ref|NM_079515.2| Drosophila melanogaster Regena CG2161-RB, transcript variant B (Rga), mRNA Length = 2812 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 256 cacacaaacacacgcacagg 275
>dbj|AK172680.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830228D02 product:toll-like receptor 7, full insert sequence Length = 4936 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacaggcaatacat 301 |||||| |||||| |||||||||||||| Sbjct: 1963 cacacacacacacacacaggcaatacat 1936
>gb|AC092717.2| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone BACR05N10, complete sequence Length = 169600 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 45672 cacacaaacacacgcacagg 45653
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 agcggcacctggcggcgcag 441 |||||||||||||||||||| Sbjct: 447426 agcggcacctggcggcgcag 447407
>gb|AC007173.6|AC007173 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR01A03, complete sequence Length = 155254 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 18758 cacacaaacacacgcacagg 18739
>gb|AC009538.4|AC009538 Drosophila melanogaster, chromosome 3R, region 83A-83A, BAC clone BACR24O24, complete sequence Length = 173927 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 157180 cacacaaacacacgcacagg 157161
>gb|AC009346.5|AC009346 Drosophila melanogaster, chromosome 3R, region 83A-83B, BAC clone BACR03P13, complete sequence Length = 168448 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 42170 cacacaaacacacgcacagg 42151
>gb|U75467.1|DMU75467 Drosophila melanogaster Rga and Atu genes, complete cds Length = 8741 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 3095 cacacaaacacacgcacagg 3114
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 gcagcggcacctggcggcgc 439 |||||||||||||||||||| Sbjct: 5709842 gcagcggcacctggcggcgc 5709861
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 agcatgtacaggctactcggcttg 212 |||||||||||||||| ||||||| Sbjct: 3578754 agcatgtacaggctacacggcttg 3578777
>gb|AC005810.3|AC005810 Drosophila melanogaster, chromosome 2R, region 36E1-36E3, P1 clone DS07089, complete sequence Length = 32772 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 23187 cacacaaacacacgcacagg 23206
>gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67 of 83 of the complete sequence Length = 262745 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 119407 cacacaaacacacgcacagg 119388
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 acacacgcacaggcaataca 300 |||||||||||||||||||| Sbjct: 18751 acacacgcacaggcaataca 18732
>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete sequence Length = 328128 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacaggcaat 297 |||||| ||||||||||||||||| Sbjct: 84566 cacacacacacacgcacaggcaat 84589
>gb|AE003602.4| Drosophila melanogaster chromosome 3R, section 6 of 118 of the complete sequence Length = 326091 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 202241 cacacaaacacacgcacagg 202222
>gb|AC161495.3| Mus musculus chromosome 5, clone RP23-393A24, complete sequence Length = 194459 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacagg 293 |||||||||||||||||||| Sbjct: 148499 cacacaaacacacgcacagg 148518
>emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on chromosome X, complete sequence Length = 201223 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 274 cacacaaacacacgcacaggcaatacat 301 |||||| |||||| |||||||||||||| Sbjct: 130445 cacacacacacacacacaggcaatacat 130472
>gb|DQ243232.1| Bombyx mori chromosome 23 microsatellite S2306-R sequence Length = 385 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 tttattaccacacaaacacacgcacagg 293 |||||||||||||| |||||| |||||| Sbjct: 190 tttattaccacacacacacacacacagg 163 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,927,221 Number of Sequences: 3902068 Number of extensions: 3927221 Number of successful extensions: 135875 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135636 Number of HSP's gapped (non-prelim): 239 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
