ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF3X_HUMAN (O75153) Putative eukaryotic translation initiation f... 28 9.9
2CLCA_ARATH (P92941) Chloride channel protein CLC-a (AtCLC-a) 28 9.9

>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1309

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 154 QIHAQHARTQLVSIDPSVSWTMNDPPSLNFL 246
           +IH +H R  L S+DPS ++   D  SL+FL
Sbjct: 129 RIHVRHVRDLLKSLDPSDAFNGVDCNSLSFL 159



to top

>CLCA_ARATH (P92941) Chloride channel protein CLC-a (AtCLC-a)|
          Length = 775

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 10  NSGTSRNLITS*AHLNRVRKEREQKWTFNNKRRRSEEEAASK 135
           N+GT  + +   AHL +V K+R   W  N KRR  E E   K
Sbjct: 632 NTGTELHGLILRAHLVKVLKKR---WFLNEKRRTEEWEVREK 670


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,982,532
Number of Sequences: 219361
Number of extensions: 638824
Number of successful extensions: 1816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top