>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4
          Length = 1203

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 420 TSPPPTACGSSSSPGRRAQHRLVSLPGTGYFN 325
           +SPPP ACGS S+P   A     ++ G G+F+
Sbjct: 880 SSPPPGACGSPSAPTPSAGVAATTIAGFGHFH 911

>XYLT2_MOUSE (Q9EPL0) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)|
           (Peptide O-xylosyltransferase 2)
          Length = 865

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 480 PDAANFRAVDFRRPNRGCVPTSPPPTACGSSSSPGRRAQHRLVSLPG 340
           P A   RAV  R+     VP +PPP A G  +  G  A   L+  PG
Sbjct: 91  PVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALIGAPG 137

>MSH6_DROME (Q9VUM0) Probable DNA mismatch repair protein MSH6|
          Length = 1190

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
 Frame = +2

Query: 281 SSPTRSTARMLVAWSLK*PVPGSDTSRCCARR------------PGDDEEPHAVGGGLVG 424
           S  T+   R ++   LK PVPG+    C A +            PG D+    V   +  
Sbjct: 453 SQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDNWPLVLRTMQS 512

Query: 425 TQPRLGLRKSTARKLAASGQLHCVSSVH 508
               LGL  +   KLA      C+  +H
Sbjct: 513 DMDHLGLTPNDNYKLALKALGQCIFFIH 540

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle|
            attachment abnormal protein 3)
          Length = 3767

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 501  DDTQCSCPDAANFRAVDFRRPNRGCVPTSP 412
            DD  C+CP     ++    RP R C+P  P
Sbjct: 1782 DDYSCACPPGFKDKSPSSSRPGRLCIPVIP 1811

>XYLT2_BOVIN (Q5QQ49) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)|
           (Peptide O-xylosyltransferase 2)
          Length = 867

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -2

Query: 480 PDAANFRAVDFRRPNRGCVPTSPPPTACGSSSSPGRRAQHRLVSLPG 340
           P A   RAV  R      +P +PPP A G  +  G  A+  LV   G
Sbjct: 91  PVAKVVRAVTSRHRTGRRIPPTPPPEAPGRQNLSGAAAEEALVGAAG 137

>VE4_HPV47 (P22421) Probable protein E4|
          Length = 304

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 441 PNRGCV--PTSPPPTACGSSSSPGRRAQHRLVSLPGTG 334
           P RG V  PT PPP      + PG R   RLV +PG G
Sbjct: 152 PGRGPVLKPTLPPPPP-PPPTGPGLRRSTRLVLVPGQG 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,223,647
Number of Sequences: 219361
Number of extensions: 807921
Number of successful extensions: 2705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2695
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)