Clone Name | rbart38f05 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ004857.1|HVAJ4857 Hordeum vulgare mRNA for hypothetical protein Length = 1225 Score = 394 bits (199), Expect = e-106 Identities = 266/290 (91%) Strand = Plus / Minus Query: 84 ggagtaatcagatcctggctgactcggcctgcaccttgatgtgcatggtggagttgtagt 143 ||||| ||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct: 1035 ggagtcatcagttcctggtanacttggcctgcaccttgatgtgcatggtgganttgtagt 976 Query: 144 gcaccacctcgggccgcaccgtctgcatcgagaacacctccgactgcaggtagcagaacc 203 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 975 gcaccacctcgggccgcaccgtctgcatcganaacacctccgactgcaggtagcaggacc 916 Query: 204 cgtcgccggcgttggggccgtagtagaactgcgccgccgcgcacgcgcagtcgtccaggc 263 |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 915 cgtcgccggcgtcgcggccgtagtaaaactgcgccgccgcgcacgcgcagtcgtccaggc 856 Query: 264 acgccttcttgcacgcctcctcgcccacccgctccacggcccgcatgctcgtggcgtggt 323 ||||| |||||||||||||||||| ||||||||||| |||||||||||||| | ||||| Sbjct: 855 acgccctcttgcacgcctcctcgctcacccgctccatcgcccgcatgctcgttgtgtggt 796 Query: 324 cgttgaagtagcccgtgcccggcagcgacaccagccggtgctgcgcgcgc 373 |||||||||| |||||| || ||||||||| | |||||||||||||||| Sbjct: 795 cgttgaagtacgccgtgctcgccagcgacacnanccggtgctgcgcgcgc 746 Score = 141 bits (71), Expect = 3e-30 Identities = 87/90 (96%), Gaps = 2/90 (2%) Strand = Plus / Minus Query: 419 gtcgggacgcagccgcggttgggcctccggaagtccaccgcccggaagttggccgcgtcg 478 |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 706 gtcgggacnca-ccgcggttgggcctccggaa-tccaccgcccggaagttggccgcgtcg 649 Query: 479 gggcagctgcactgcgtgtcgtccgtgcac 508 |||||||||||||||||||||||||||||| Sbjct: 648 gggcagctgcactgcgtgtcgtccgtgcac 619
>gb|AY805122.1| Zea mays clone 5Zm6R25 putative protein kinase-like protein mRNA, partial cds Length = 239 Score = 188 bits (95), Expect = 1e-44 Identities = 152/171 (88%) Strand = Plus / Minus Query: 109 ggcctgcaccttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctg 168 |||| ||||||||| ||||||||||||||||||||||||||||| ||| || ||||| Sbjct: 197 ggcccgcaccttgagatgcatggtggagttgtagtgcaccacctccggctgcgacgtctc 138 Query: 169 catcgagaacacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagta 228 || ||| | |||||||||||||||||||||||| || |||||||||| || ||||||| Sbjct: 137 cagcgacagcacctccgactgcaggtagcagaagccatcgccggcgtcggtgccgtagac 78 Query: 229 gaactgcgccgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgc 279 |||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct: 77 gaactgcgccgccgcgcaggcgcagtcgtccaggcacgccttcctgcacgc 27
>ref|NM_189334.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 178 bits (90), Expect = 1e-41 Identities = 216/258 (83%) Strand = Plus / Minus Query: 118 cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 177 |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| || Sbjct: 1359 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 1300 Query: 178 cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 237 |||||||||||||||||||||||| |||||| || || | ||||| ||||||||| Sbjct: 1299 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 1240 Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 297 |||| ||||||||||||| ||| |||||| |||||||||| |||||||||||| ||| Sbjct: 1239 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 1180 Query: 298 cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 357 || | ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||||| Sbjct: 1179 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 1120 Query: 358 ccggtgctgcgcgcgccg 375 ||||||| |||||||||| Sbjct: 1119 ccggtgccgcgcgcgccg 1102 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Minus Query: 418 cgtcgggacgcagccgcggttgggcctccggaagtccaccgcccggaagttggccgcgtc 477 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct: 1068 cgtcgggacgcagccgcggttcggccgccggaagtccaccgcccggaagttggcggcgtc 1009 Query: 478 ggggcagctgcactgcgtgtc 498 |||||||||||||||| |||| Sbjct: 1008 ggggcagctgcactgcatgtc 988
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 178 bits (90), Expect = 1e-41 Identities = 216/258 (83%) Strand = Plus / Minus Query: 118 cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 177 |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| || Sbjct: 42232582 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 42232523 Query: 178 cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 237 |||||||||||||||||||||||| |||||| || || | ||||| ||||||||| Sbjct: 42232522 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 42232463 Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 297 |||| ||||||||||||| ||| |||||| |||||||||| |||||||||||| ||| Sbjct: 42232462 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 42232403 Query: 298 cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 357 || | ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||||| Sbjct: 42232402 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 42232343 Query: 358 ccggtgctgcgcgcgccg 375 ||||||| |||||||||| Sbjct: 42232342 ccggtgccgcgcgcgccg 42232325 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Minus Query: 418 cgtcgggacgcagccgcggttgggcctccggaagtccaccgcccggaagttggccgcgtc 477 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct: 42232291 cgtcgggacgcagccgcggttcggccgccggaagtccaccgcccggaagttggcggcgtc 42232232 Query: 478 ggggcagctgcactgcgtgtc 498 |||||||||||||||| |||| Sbjct: 42232231 ggggcagctgcactgcatgtc 42232211 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 447 ggaagtccaccgcccggaagttggccgcgtcggggcagctgcactgcgtgtc 498 ||||||||||||||||||||||||| | ||| ||||||| | ||||| |||| Sbjct: 6842978 ggaagtccaccgcccggaagttggcggagtcagggcagcagtactgcatgtc 6843029 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 436 gttgggcctccggaagtccaccgcccggaagtt 468 |||||||| ||||||||||||||||| |||||| Sbjct: 11596786 gttgggccgccggaagtccaccgcccagaagtt 11596818
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 178 bits (90), Expect = 1e-41 Identities = 216/258 (83%) Strand = Plus / Minus Query: 118 cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 177 |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| || Sbjct: 4539 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 4480 Query: 178 cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 237 |||||||||||||||||||||||| |||||| || || | ||||| ||||||||| Sbjct: 4479 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 4420 Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 297 |||| ||||||||||||| ||| |||||| |||||||||| |||||||||||| ||| Sbjct: 4419 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 4360 Query: 298 cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 357 || | ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||||| Sbjct: 4359 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 4300 Query: 358 ccggtgctgcgcgcgccg 375 ||||||| |||||||||| Sbjct: 4299 ccggtgccgcgcgcgccg 4282 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Minus Query: 418 cgtcgggacgcagccgcggttgggcctccggaagtccaccgcccggaagttggccgcgtc 477 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct: 4248 cgtcgggacgcagccgcggttcggccgccggaagtccaccgcccggaagttggcggcgtc 4189 Query: 478 ggggcagctgcactgcgtgtc 498 |||||||||||||||| |||| Sbjct: 4188 ggggcagctgcactgcatgtc 4168
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 178 bits (90), Expect = 1e-41 Identities = 216/258 (83%) Strand = Plus / Minus Query: 118 cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 177 |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| || Sbjct: 105780 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 105721 Query: 178 cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 237 |||||||||||||||||||||||| |||||| || || | ||||| ||||||||| Sbjct: 105720 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 105661 Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 297 |||| ||||||||||||| ||| |||||| |||||||||| |||||||||||| ||| Sbjct: 105660 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 105601 Query: 298 cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 357 || | ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||||| Sbjct: 105600 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 105541 Query: 358 ccggtgctgcgcgcgccg 375 ||||||| |||||||||| Sbjct: 105540 ccggtgccgcgcgcgccg 105523 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Minus Query: 418 cgtcgggacgcagccgcggttgggcctccggaagtccaccgcccggaagttggccgcgtc 477 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct: 105489 cgtcgggacgcagccgcggttcggccgccggaagtccaccgcccggaagttggcggcgtc 105430 Query: 478 ggggcagctgcactgcgtgtc 498 |||||||||||||||| |||| Sbjct: 105429 ggggcagctgcactgcatgtc 105409
>dbj|AK107370.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B03, full insert sequence Length = 1610 Score = 178 bits (90), Expect = 1e-41 Identities = 216/258 (83%) Strand = Plus / Minus Query: 118 cttgatgtgcatggtggagttgtagtgcaccacctcgggccgcaccgtctgcatcgagaa 177 |||||| ||||||| |||||||||||| | |||||| ||| ||| ||||| || ||| || Sbjct: 1414 cttgatatgcatggaggagttgtagtgaaacacctccggctgcatcgtctccagcgacaa 1355 Query: 178 cacctccgactgcaggtagcagaacccgtcgccggcgttggggccgtagtagaactgcgc 237 |||||||||||||||||||||||| |||||| || || | ||||| ||||||||| Sbjct: 1354 cacctccgactgcaggtagcagaagccgtcgttggggtcgaatccgtacacgaactgcgc 1295 Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacgcctcctcgcccacccgctc 297 |||| ||||||||||||| ||| |||||| |||||||||| |||||||||||| ||| Sbjct: 1294 cgccatgcacgcgcagtcgcccaagcacgctgccttgcacgccgcctcgcccaccctctc 1235 Query: 298 cacggcccgcatgctcgtggcgtggtcgttgaagtagcccgtgcccggcagcgacaccag 357 || | ||||||||| ||| ||||| |||||||||| ||||| | ||||||||||||| Sbjct: 1234 cagcgtccgcatgctggtgtcgtggctgttgaagtaggccgtgtcgcgcagcgacaccag 1175 Query: 358 ccggtgctgcgcgcgccg 375 ||||||| |||||||||| Sbjct: 1174 ccggtgccgcgcgcgccg 1157 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Minus Query: 418 cgtcgggacgcagccgcggttgggcctccggaagtccaccgcccggaagttggccgcgtc 477 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct: 1123 cgtcgggacgcagccgcggttcggccgccggaagtccaccgcccggaagttggcggcgtc 1064 Query: 478 ggggcagctgcactgcgtgtc 498 |||||||||||||||| |||| Sbjct: 1063 ggggcagctgcactgcatgtc 1043
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 447 ggaagtccaccgcccggaagttggccgcgtcggggcagctgcactgcgtgtc 498 ||||||||||||||||||||||||| | ||| ||||||| | ||||| |||| Sbjct: 10702 ggaagtccaccgcccggaagttggcggagtcagggcagcagtactgcatgtc 10753
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 447 ggaagtccaccgcccggaagttggccgcgtcggggcagctgcactgcgtgtc 498 ||||||||||||||||||||||||| | ||| ||||||| | ||||| |||| Sbjct: 125039 ggaagtccaccgcccggaagttggcggagtcagggcagcagtactgcatgtc 125090
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 447 ggaagtccaccgcccggaagttggccgcgtcggggcagctgca 489 ||||||||||||||| ||||||||| |||||||||| ||||| Sbjct: 2473680 ggaagtccaccgcccagaagttggcaacgtcggggcaactgca 2473722
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 447 ggaagtccaccgcccggaagttggccgcgtcggggcagctgca 489 ||||||||||||||| ||||||||| |||||||||| ||||| Sbjct: 2473790 ggaagtccaccgcccagaagttggcaacgtcggggcaactgca 2473832
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 447 ggaagtccaccgcccggaagttggccgcgtcggggcagctgca 489 ||||||||||||||| ||||||||| |||||||||| ||||| Sbjct: 46176 ggaagtccaccgcccagaagttggcaacgtcggggcaactgca 46218
>dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_C07 Length = 108208 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 436 gttgggcctccggaagtccaccgcccggaagtt 468 |||||||| ||||||||||||||||| |||||| Sbjct: 50582 gttgggccgccggaagtccaccgcccagaagtt 50614
>dbj|AP007204.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05 Length = 134776 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 436 gttgggcctccggaagtccaccgcccggaagtt 468 |||||||| ||||||||||||||||| |||||| Sbjct: 103793 gttgggccgccggaagtccaccgcccagaagtt 103825
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11 Length = 132384 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 436 gttgggcctccggaagtccaccgcccggaagtt 468 |||||||| ||||||||||||||||| |||||| Sbjct: 35910 gttgggccgccggaagtccaccgcccagaagtt 35942
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 cgcgccgccccggcgacgacgaggag 394 |||||||||||| ||||||||||||| Sbjct: 4679006 cgcgccgccccgccgacgacgaggag 4679031
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0455A11 Length = 158629 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 cgcgccgccccggcgacgacgaggag 394 |||||||||||| ||||||||||||| Sbjct: 37022 cgcgccgccccgccgacgacgaggag 37047
>dbj|AK072227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168G19, full insert sequence Length = 2470 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 cgcgccgccccggcgacgacgaggag 394 |||||||||||| ||||||||||||| Sbjct: 93 cgcgccgccccgccgacgacgaggag 118
>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete sequence Length = 231197 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 gcgccgccgcgcacgcgcagtc 255 |||||||||||||||||||||| Sbjct: 29522 gcgccgccgcgcacgcgcagtc 29501
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cgccgcgcacgcgcagtcgtc 258 ||||||||||||||||||||| Sbjct: 2014248 cgccgcgcacgcgcagtcgtc 2014268
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 ccggcagcgacaccagccggt 362 ||||||||||||||||||||| Sbjct: 2899625 ccggcagcgacaccagccggt 2899645 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gtagcccgtgcccggcagcg 350 |||||||||||||||||||| Sbjct: 2372421 gtagcccgtgcccggcagcg 2372440
>ref|XM_478649.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3237 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 278 |||| |||||| ||||| | ||||||||||||||| ||||| Sbjct: 1388 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 1348
>gb|AC139042.18| Mus musculus chromosome 18, clone RP23-261C19, complete sequence Length = 195202 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 gctcagggtgggagtaatcag 94 ||||||||||||||||||||| Sbjct: 30282 gctcagggtgggagtaatcag 30262
>emb|Y00309.1|MMLDHAG Mouse LDH-A gene for lactate dehydrogenase-A Length = 12851 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 gtgctgcgcgcgccgccccgg 381 ||||||||||||||||||||| Sbjct: 2548 gtgctgcgcgcgccgccccgg 2568
>emb|X03753.1|MMALDH1 Mouse LDH-A gene for lactate dehydrogenase A (exons 1-2) Length = 3157 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 gtgctgcgcgcgccgccccgg 381 ||||||||||||||||||||| Sbjct: 969 gtgctgcgcgcgccgccccgg 989
>gb|AC090123.68| Mus musculus strain C57BL/6J clone rp23-323l3 map 7, complete sequence Length = 223438 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 gtgctgcgcgcgccgccccgg 381 ||||||||||||||||||||| Sbjct: 131735 gtgctgcgcgcgccgccccgg 131715
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 278 |||| |||||| ||||| | ||||||||||||||| ||||| Sbjct: 21813389 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 21813429
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gtgcccggcagcgacaccagc 358 ||||||||||||||||||||| Sbjct: 1396742 gtgcccggcagcgacaccagc 1396722 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cacccgctccacggcccgca 308 |||||||||||||||||||| Sbjct: 663807 cacccgctccacggcccgca 663826
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 278 |||| |||||| ||||| | ||||||||||||||| ||||| Sbjct: 130572 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 130612
>dbj|AK101616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052G09, full insert sequence Length = 3238 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 278 |||| |||||| ||||| | ||||||||||||||| ||||| Sbjct: 1389 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 1349
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Plus Query: 238 cgccgcgcacgcgcagtcgtccaggcacgccttcttgcacg 278 |||| |||||| ||||| | ||||||||||||||| ||||| Sbjct: 27065 cgccccgcacgagcagttgcccaggcacgccttctcgcacg 27105
>dbj|AP001690.1| Homo sapiens genomic DNA, chromosome 21q, section 34/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 ctcatggtcaactttggaatt 40 ||||||||||||||||||||| Sbjct: 326230 ctcatggtcaactttggaatt 326210
>gb|AC113953.6| Mus musculus chromosome 18, clone RP24-215C1, complete sequence Length = 201174 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 gctcagggtgggagtaatcag 94 ||||||||||||||||||||| Sbjct: 2047 gctcagggtgggagtaatcag 2067
>gb|U05674.1|RNU05674 Rattus norvegicus Sprague Dawley lactate dehydrogenase A subunit gene, promoter region Length = 1192 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 361 gtgctgcgcgcgccgccccgg 381 ||||||||||||||||||||| Sbjct: 1021 gtgctgcgcgcgccgccccgg 1041
>dbj|AP000476.2| Homo sapiens genomic DNA, chromosome 21q21.2, clone:B86D9, LL56-APP region, complete sequence Length = 171452 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 ctcatggtcaactttggaatt 40 ||||||||||||||||||||| Sbjct: 161611 ctcatggtcaactttggaatt 161591
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 gcgacgacgaggagccgcac 400 |||||||||||||||||||| Sbjct: 627205 gcgacgacgaggagccgcac 627224
>gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosome 10, complete sequence Length = 216816 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tttggaatttcaacatatat 51 |||||||||||||||||||| Sbjct: 12344 tttggaatttcaacatatat 12363
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gtagcccgtgcccggcagcg 350 |||||||||||||||||||| Sbjct: 1603626 gtagcccgtgcccggcagcg 1603645
>ref|XM_368674.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00570.4) partial mRNA Length = 1029 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cccgtgcccggcagcgacac 354 |||||||||||||||||||| Sbjct: 658 cccgtgcccggcagcgacac 677
>gb|DQ145546.1| Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence Length = 144170 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tggctgactcggcctgcacc 118 |||||||||||||||||||| Sbjct: 41028 tggctgactcggcctgcacc 41047
>gb|AY659262.1| Synthetic construct Peudomonas aeruginosa clone FLH041912.01F PA2467 gene, partial cds Length = 987 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 cgaggagccgcacgccgtcggcgg 411 ||||| |||||||||||||||||| Sbjct: 730 cgaggcgccgcacgccgtcggcgg 707
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gtagcccgtgcccggcagcg 350 |||||||||||||||||||| Sbjct: 2850266 gtagcccgtgcccggcagcg 2850285
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence Length = 216902 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccgccgcgcacgcgcagtcg 256 |||||||||||||||||||| Sbjct: 113816 ccgccgcgcacgcgcagtcg 113835
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 gcagcgacaccagccggtgctgcgcgcg 372 |||||||||||||| ||||| ||||||| Sbjct: 4967797 gcagcgacaccagcaggtgcggcgcgcg 4967770
>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence Length = 31404 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcgacaccagccggtgctgc 367 |||||||||||||||||||| Sbjct: 12009 gcgacaccagccggtgctgc 12028
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gtagcccgtgcccggcagcg 350 |||||||||||||||||||| Sbjct: 3037393 gtagcccgtgcccggcagcg 3037412
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gtagcccgtgcccggcagcg 350 |||||||||||||||||||| Sbjct: 2580446 gtagcccgtgcccggcagcg 2580465
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cgcgccgccccggcgacgac 388 |||||||||||||||||||| Sbjct: 197401 cgcgccgccccggcgacgac 197420
>emb|AJ005522.1|HAA005522 Hippopotamus amphibius gene for pancreatic ribonuclease Length = 348 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tgatgtgcatggtggagttg 139 |||||||||||||||||||| Sbjct: 244 tgatgtgcatggtggagttg 225
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 gcagcgacaccagccggtgctgcgcgcg 372 |||||||||||||| ||||| ||||||| Sbjct: 4688174 gcagcgacaccagcaggtgcggcgcgcg 4688147
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcgacaccagccggtgctgc 367 |||||||||||||||||||| Sbjct: 2416439 gcgacaccagccggtgctgc 2416458
>gb|AC159021.2| Pan troglodytes BAC clone CH251-508C8 from chromosome unknown, complete sequence Length = 240827 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tgatgtgcatggtggagttg 139 |||||||||||||||||||| Sbjct: 142010 tgatgtgcatggtggagttg 142029
>gb|AC034228.6| Homo sapiens chromosome 5 clone CTD-2198K16, complete sequence Length = 183378 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tgatgtgcatggtggagttg 139 |||||||||||||||||||| Sbjct: 9598 tgatgtgcatggtggagttg 9579
>gb|AC034216.5| Homo sapiens chromosome 5 clone CTD-2004C12, complete sequence Length = 178405 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tgatgtgcatggtggagttg 139 |||||||||||||||||||| Sbjct: 72808 tgatgtgcatggtggagttg 72789
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gcgccgccgcgcacgcgcag 253 |||||||||||||||||||| Sbjct: 2170552 gcgccgccgcgcacgcgcag 2170533
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gcgcgcgccgccccggcgacgacg 389 |||||||||||| ||||||||||| Sbjct: 14016235 gcgcgcgccgccgcggcgacgacg 14016258
>gb|AC157482.2| Pan troglodytes BAC clone CH251-366D6 from chromosome unknown, complete sequence Length = 168325 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tgatgtgcatggtggagttg 139 |||||||||||||||||||| Sbjct: 144384 tgatgtgcatggtggagttg 144365
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cgcgccgccccggcgacgac 388 |||||||||||||||||||| Sbjct: 5820936 cgcgccgccccggcgacgac 5820955 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gtcggggcagctgcactgcg 494 |||||||||||||||||||| Sbjct: 2413845 gtcggggcagctgcactgcg 2413864 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 acgacgaggagccgcacgccgtcg 407 |||||||||||||||||| ||||| Sbjct: 1882236 acgacgaggagccgcacgacgtcg 1882213
>gb|AE004729.1| Pseudomonas aeruginosa PAO1, section 290 of 529 of the complete genome Length = 12189 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 ggtgctgcgcgcgccgcccc 379 |||||||||||||||||||| Sbjct: 10160 ggtgctgcgcgcgccgcccc 10179
>gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 of the complete genome Length = 11021 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 388 cgaggagccgcacgccgtcggcgg 411 ||||| |||||||||||||||||| Sbjct: 6797 cgaggcgccgcacgccgtcggcgg 6820
>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B05 Length = 117057 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 gcgcgcgccgccccggcgacgacg 389 |||||||||||| ||||||||||| Sbjct: 85873 gcgcgcgccgccgcggcgacgacg 85896
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 cggtgctgcgcgcgccgccc 378 |||||||||||||||||||| Sbjct: 3267717 cggtgctgcgcgcgccgccc 3267736
>emb|Z78016.1|CER186 Caenorhabditis elegans Cosmid R186, complete sequence Length = 29134 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tcaactttggaatttcaaca 46 |||||||||||||||||||| Sbjct: 7681 tcaactttggaatttcaaca 7700
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 gcagcgacaccagccggtgctgcgcgcg 372 |||||||||||||| ||||| ||||||| Sbjct: 4692153 gcagcgacaccagcaggtgcggcgcgcg 4692126
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cgacgacgaggagccgcacg 401 |||||||||||||||||||| Sbjct: 1286626 cgacgacgaggagccgcacg 1286645
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gtagcccgtgcccggcagcg 350 |||||||||||||||||||| Sbjct: 2308469 gtagcccgtgcccggcagcg 2308450
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gcaccacctcgggccgcacc 163 |||||||||||||||||||| Sbjct: 2418982 gcaccacctcgggccgcacc 2419001
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 cgccgtcggcggtggactcg 419 |||||||||||||||||||| Sbjct: 2532167 cgccgtcggcggtggactcg 2532186
>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence Length = 262262 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tttggaatttcaacatatat 51 |||||||||||||||||||| Sbjct: 31693 tttggaatttcaacatatat 31674
>gb|AC004511.1|AC004511 Homo sapiens chromosome 5, P1 clone 792C12 (LBNL H22), complete sequence Length = 45005 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 tgatgtgcatggtggagttg 139 |||||||||||||||||||| Sbjct: 12645 tgatgtgcatggtggagttg 12664
>gb|AC158297.3| Mus musculus chromosome 7, clone RP24-336M17, complete sequence Length = 196548 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tttcaacatatatgccatag 58 |||||||||||||||||||| Sbjct: 149406 tttcaacatatatgccatag 149425
>gb|L37531.1|STMPGLYZ Streptomyces coelicolor bacteriophage (phiC31) resistance (pglY and pglZ) genes, complete cds's Length = 9461 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cgcgccgccccggcgacgac 388 |||||||||||||||||||| Sbjct: 5088 cgcgccgccccggcgacgac 5107
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gcgacaccagccggtgctgc 367 |||||||||||||||||||| Sbjct: 1900611 gcgacaccagccggtgctgc 1900592 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,562,923 Number of Sequences: 3902068 Number of extensions: 3562923 Number of successful extensions: 78599 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75060 Number of HSP's gapped (non-prelim): 3538 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)