ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38f03 |
|---|---|
| Clone Library Name | barley_pub |
>LEUD2_THEMA (Q9WZ25) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 166 Score = 49.3 bits (116), Expect = 6e-06 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IFFRN++ G L + + + E + GD+ VDL+N V+ N T GK+Y+++P + Sbjct: 93 IFFRNAINIG----LPIVELKEADEFEEGDIAEVDLENGVVRNLTKGKEYRIRPYPEFLM 148 Query: 328 PVIEAGGIFAYARK 287 ++EAGG Y K Sbjct: 149 KIMEAGGWLEYCLK 162
>LEUD2_METMA (Q8PWT6) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 162 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IFFRN++ G V LE D+ + GD + VD+ V+ N T G+ Y+ P+ D Sbjct: 88 IFFRNAINIG-VPVLECPDTDKIDD---GDELEVDISTGVIQNRTKGETYQATPLPDFVR 143 Query: 328 PVIEAGGIFAYARK 287 +++ GG+ YARK Sbjct: 144 EIVDEGGLIEYARK 157
>LEUD2_ARCFU (O28513) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 165 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGDAG- 329 IF+RN++ G P+ +AD+ + +GD + VDL +++N T G + ++KPI + Sbjct: 91 IFYRNAINVG--LPVLIADTDS---IDSGDELEVDLGKGLVVNRTKGIEIRVKPIPEVML 145 Query: 328 PVIEAGGIFAYARKTGMI 275 ++ GG+ +Y +K G I Sbjct: 146 KILHEGGLVSYVKKHGDI 163
>LEUD_THETN (Q8RDK1) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 161 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IF+RN++ G P+ L A + GD+V+VD+DN ++ N T G ++K +P + Sbjct: 88 IFYRNAINIG--LPI-LESREAVDGIEEGDIVSVDVDNGIIRNVTKGTEFKAQPFPEFIK 144 Query: 328 PVIEAGGIFAYARK 287 +I+ GG+ Y R+ Sbjct: 145 EIIKYGGLINYVRE 158
>LEUD1_THEMA (Q9WYC8) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 166 Score = 43.5 bits (101), Expect = 3e-04 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IF+RN++ G L + + E GD + +DL+N VL N T+GK+Y+ PI Sbjct: 90 IFYRNAINVG----LPVIELKEVDEINQGDELEIDLENGVLKNLTTGKEYRFTPIPKFLL 145 Query: 328 PVIEAGGIFAYARKTG 281 +++ GI Y +K G Sbjct: 146 EILKEDGIVNYLKKHG 161
>LEUD_AQUAE (O67399) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 168 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYK-LKPIGDAG 329 IFFRN++ G P+ A A E + GD + VDL+ V+ N +GK+Y+ K + Sbjct: 93 IFFRNAINIG--LPIVEAPE-AVDEIEHGDEIEVDLEKGVIKNLRTGKEYQATKFPKELQ 149 Query: 328 PVIEAGGIFAYARK 287 +++AGG+ AYA++ Sbjct: 150 DILKAGGLMAYAKE 163
>LEUD2_METAC (Q8TU71) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 162 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IFFRN++ G + + + + GD + VDL + N T G+ Y+ P+ D Sbjct: 88 IFFRNAINIG----VPVLECPNTDRIDDGDELEVDLSTGDIQNITKGETYQATPLPDFVR 143 Query: 328 PVIEAGGIFAYARK 287 +++ GG+ YARK Sbjct: 144 EIVDEGGLIEYARK 157
>LEUD1_METTH (O26917) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 170 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IF+RN++ G P+ +A A GD V++DL + + N T+G +Y++KP D Sbjct: 92 IFYRNAINIG--LPVIMAKVDADD----GDEVSIDLRSGQIRNLTAGSEYRMKPFNDYML 145 Query: 328 PVIEAGGIFAYARKT 284 ++E GG+ + KT Sbjct: 146 SILEDGGLVNHYLKT 160
>LEUD1_METJA (Q58667) 3-isopropylmalate dehydratase small subunit 1 (EC| 4.2.1.33) (Isopropylmalate isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1) Length = 170 Score = 39.3 bits (90), Expect = 0.006 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLK-PIGDAG 329 IF+RN++ G + + D E K GD+V +DLD ++ K K + P G Sbjct: 90 IFYRNAINVGLIPIIANTD-----EIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLER 144 Query: 328 PVIEAGGIFAYARKTGMI 275 ++ AGG+ Y +K +I Sbjct: 145 EILAAGGLVNYLKKRKLI 162
>LEUD_WOLSU (Q7M887) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 167 Score = 38.1 bits (87), Expect = 0.014 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD-AG 329 IF+RNS TG L + + + E + GD + VD+ + N T + Y KPI Sbjct: 91 IFYRNSFNTG----LPILEVKETDEIREGDTLEVDMAQGTIKNLTRNQTYAFKPIPPFMM 146 Query: 328 PVIEAGGIFAYAR 290 ++E+GG+ +A+ Sbjct: 147 ELLESGGLIEHAK 159
>LEUD_PYRAE (Q8ZW36) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 161 Score = 37.7 bits (86), Expect = 0.018 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPI-GDAG 329 IFFRN++ G P+ L G ++ K GD V +D++ ++ N T+G+ KP+ G Sbjct: 89 IFFRNAINVG--LPV-LQAPGIREKVKDGDEVELDVEGGIVRNITTGEVIVGKPLRGLPL 145 Query: 328 PVIEAGGIFAYARKT 284 +++AGG+ Y + + Sbjct: 146 EILKAGGLLNYLKNS 160
>LEUD_CLOAB (Q97EE1) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 163 Score = 36.6 bits (83), Expect = 0.039 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKPIGD 335 IF+RNS+ G +P+ L A + TGD + VD ++ N T K+YK +P D Sbjct: 90 IFYRNSINIG--FPI-LECEEAVNDASTGDKLEVDFIEGIIKNVTLNKEYKAQPFPD 143
>BPA1_STRAU (P33912) Non-haem bromoperoxidase BPO-A1 (EC 1.11.1.-) (Bromide| peroxidase) (BPO1) Length = 274 Score = 30.0 bits (66), Expect = 3.7 Identities = 23/78 (29%), Positives = 34/78 (43%) Frame = +3 Query: 54 FHGCNTQYNKVQHSRA*YYWYKAMSK**QNCWTITPPEKCKDSYS*TSLTCHPQALN*SD 233 F N NKV +WY AM++ TI +C D++ T T + L D Sbjct: 162 FFSANRPGNKVTQGNKDAFWYMAMAQ------TIEGGVRCVDAFGYTDFT---EDLKKFD 212 Query: 234 SRSSLLFVHADLDAIIPV 287 + L VH D D ++P+ Sbjct: 213 IPT--LVVHGDDDQVVPI 228
>SYFB_DEHSC (Q3ZZD2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 809 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -1 Query: 430 CKTGDVVTVDLDNSVLINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGM 278 CK GD V +VLI+ +GK+ LKP G +E+ G+ R+ G+ Sbjct: 83 CKVGDKVVFARTGAVLIDGHNGKEIVLKPAVLRG--VESCGMVCSERELGL 131
>SYFB_DEHE1 (Q3Z9I7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 809 Score = 29.6 bits (65), Expect = 4.8 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -1 Query: 430 CKTGDVVTVDLDNSVLINHTSGKQYKLKPIGDAGPVIEAGGIFAYARKTGM 278 CK GD V +VLI+ +GK+ LKP G +E+ G+ R+ G+ Sbjct: 83 CKAGDKVVFARTGAVLIDGHNGKEMVLKPAVLRG--VESCGMVCSERELGL 131
>FUT7_MOUSE (Q11131) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 7) (FUCT-VII) Length = 389 Score = 29.3 bits (64), Expect = 6.3 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = -2 Query: 492 IPWPPGRCTPWSSRTAVPARSARPGMWSQST 400 +P+P + W SR S+ PG W++ T Sbjct: 19 LPFPDWKAPSWESRKEATCNSSSPGPWAEPT 49
>LEUD_HELHP (Q7VH32) 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 165 Score = 29.3 bits (64), Expect = 6.3 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = -1 Query: 505 IFFRNSVATGEVYPLELADSGASKECKTGDVVTVDLDNSVLINHTSGKQYKLKP 344 IF+RN++ G + ++ + GD V +D D ++ N + +Q+ P Sbjct: 90 IFYRNAINIGLAI---IESEEVAQSLENGDEVAIDFDKGIITNCKNNQQFSTTP 140
>NPY5R_RAT (Q63634) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 456 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 159 SNNLTANHGYFLIATVWTLGF 179
>NPY5R_CANFA (O62729) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 446 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 148 SNNLTANHGYFLIATVWTLGF 168
>ILVD_PROMP (Q7V1T1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 559 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%) Frame = +2 Query: 377 VNQDRVIEVDCDHIPGLALLAG-------TAVRELQGVHLPGGHGIAEED 505 +N+ R+IEV+ + IPG G +AV E+ G+ LP +A ED Sbjct: 175 INEKRLIEVEKNCIPGAGSCGGMFTANTMSAVIEVLGLSLPYSSTMAAED 224
>NPY5R_MOUSE (O70342) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 466 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 169 SNNLTANHGYFLIATVWTLGF 189
>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 455 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 220 STNLTADQAYFLFTQIWTRSF 282 S NLTA+ YFL +WT F Sbjct: 158 SNNLTANHGYFLIATVWTLGF 178
>FLGM_SHIFL (P0AEM5) Negative regulator of flagellin synthesis (Anti-sigma-28| factor) Length = 97 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/54 (33%), Positives = 33/54 (61%) Frame = -2 Query: 375 THPASSTS*SLLVMQARLLRPGGSSLMLGRLE*SRPNLREQKVSLICCQIS*AL 214 T ++STS +L QA+L++PG S + L R+E + +R ++ + +I+ AL Sbjct: 33 TTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADAL 86
>FLGM_ECOLI (P0AEM4) Negative regulator of flagellin synthesis (Anti-sigma-28| factor) Length = 97 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/54 (33%), Positives = 33/54 (61%) Frame = -2 Query: 375 THPASSTS*SLLVMQARLLRPGGSSLMLGRLE*SRPNLREQKVSLICCQIS*AL 214 T ++STS +L QA+L++PG S + L R+E + +R ++ + +I+ AL Sbjct: 33 TTASTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADAL 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,025,099 Number of Sequences: 219361 Number of extensions: 1461701 Number of successful extensions: 4346 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4341 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
