Clone Name | rbart38f03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_507518.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26 mRNA Length = 1311 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 816 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 757 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 756 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 697 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 696 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 637 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 636 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 577 Query: 497 gaagaagat 505 ||||||||| Sbjct: 576 gaagaagat 568
>ref|XM_467111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1081 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 807 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 748 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 747 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 688 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 687 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 628 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 627 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 568 Query: 497 gaagaagat 505 ||||||||| Sbjct: 567 gaagaagat 559
>ref|XM_507517.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26 mRNA Length = 1092 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 785 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 726 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 725 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 666 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 665 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 606 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 605 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 546 Query: 497 gaagaagat 505 ||||||||| Sbjct: 545 gaagaagat 537
>ref|XM_506891.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.26 mRNA Length = 1141 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 819 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 760 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 759 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 700 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 699 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 640 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 639 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 580 Query: 497 gaagaagat 505 ||||||||| Sbjct: 579 gaagaagat 571
>gb|AY363174.1| Oryza sativa (japonica cultivar-group) 3-isopropylmalate dehydratase small subunit (IPMDHSU) mRNA, complete cds Length = 1063 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 792 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 733 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 732 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 673 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 672 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 613 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 612 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 553 Query: 497 gaagaagat 505 ||||||||| Sbjct: 552 gaagaagat 544
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Plus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 26486955 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 26487014 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 26487015 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 26487074 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 26487075 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 26487134 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 26487135 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 26487194 Query: 497 gaagaagat 505 ||||||||| Sbjct: 26487195 gaagaagat 26487203
>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_B06 Length = 131956 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Plus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 86871 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 86930 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 86931 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 86990 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 86991 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 87050 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 87051 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 87110 Query: 497 gaagaagat 505 ||||||||| Sbjct: 87111 gaagaagat 87119
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Plus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 29336 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 29395 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 29396 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 29455 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 29456 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 29515 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 29516 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 29575 Query: 497 gaagaagat 505 ||||||||| Sbjct: 29576 gaagaagat 29584
>dbj|AK120006.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-A03, full insert sequence Length = 1311 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 816 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 757 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 756 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 697 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 696 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 637 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 636 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 577 Query: 497 gaagaagat 505 ||||||||| Sbjct: 576 gaagaagat 568
>dbj|AK106107.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D01, full insert sequence Length = 1141 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 819 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 760 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 759 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 700 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 699 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 640 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 639 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 580 Query: 497 gaagaagat 505 ||||||||| Sbjct: 579 gaagaagat 571
>dbj|AK103778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145B21, full insert sequence Length = 1092 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 785 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 726 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 725 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 666 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 665 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 606 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 605 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 546 Query: 497 gaagaagat 505 ||||||||| Sbjct: 545 gaagaagat 537
>dbj|AK061544.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A03, full insert sequence Length = 1081 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Minus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 807 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 748 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 747 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 688 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 687 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 628 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 627 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 568 Query: 497 gaagaagat 505 ||||||||| Sbjct: 567 gaagaagat 559
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 240 bits (121), Expect = 4e-60 Identities = 217/249 (87%) Strand = Plus / Plus Query: 257 tcacgcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggc 316 ||||||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || Sbjct: 192640 tcacgcagacttggatgcgatcattccggtcttccgggcataggcaaagatcccgcctgc 192699 Query: 317 ctcaataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtg 376 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 192700 ctcaataaccggcccggcatcgccgataggcttcagcttgtactgcttgccggatgtgtg 192759 Query: 377 gttaatcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactcctt 436 ||| |||| ||| | ||||| || || || ||||||||||||||||||||||||||||| Sbjct: 192760 gttgatcatgacgcaattatcaagttccaccgtgaccacatccccggtcttgcactcctt 192819 Query: 437 gctggcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 | ||| || ||||||| ||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 192820 ccaggctccagtgtccgctagctccaacgggtagacctcaccggtggccacggagttgcg 192879 Query: 497 gaagaagat 505 ||||||||| Sbjct: 192880 gaagaagat 192888
>gb|BT016386.1| Zea mays clone Contig219 mRNA sequence Length = 1075 Score = 176 bits (89), Expect = 5e-41 Identities = 206/245 (84%) Strand = Plus / Minus Query: 261 gcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggcctca 320 |||| ||| ||||| |||||||| |||||||| || || || |||||||| || |||||| Sbjct: 791 gcagctttcgacgcaatcattcctgtcttccgggcgtaggcaaagatccctcccgcctca 732 Query: 321 ataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtggtta 380 || || ||||| ||||||||||| || ||||||||||||| |||||| || ||||||||| Sbjct: 731 attacagggccagcatcaccaattggtttcagcttgtactccttgccagaggtgtggtta 672 Query: 381 atcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactccttgctg 440 || || || |||||| | ||||| || |||||||||||||| |||||||||||||| | | Sbjct: 671 ataaaaacggagttagcaaggtccacggtgaccacatcccctgtcttgcactccttccag 612 Query: 441 gcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcggaag 500 || || ||||| ||||||||| ||||||||||| || ||||||||||| ||||| || Sbjct: 611 gccccaacgtccgtgagctccagagggtacacctctccagtggccacggagttgcgaaaa 552 Query: 501 aagat 505 ||||| Sbjct: 551 aagat 547
>gb|AY109732.1| Zea mays CL1042_1 mRNA sequence Length = 1085 Score = 174 bits (88), Expect = 2e-40 Identities = 199/236 (84%) Strand = Plus / Minus Query: 261 gcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggcctca 320 |||| ||| ||||| |||||||| |||||||| || || || |||||||| ||||||||| Sbjct: 753 gcagctttcgacgcaatcattcctgtcttccgggcgtaggcaaagatccctccggcctca 694 Query: 321 ataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtggtta 380 || || ||||| ||||||||||| || ||||||||||||| |||||| || ||||||||| Sbjct: 693 attacagggccagcatcaccaattggtttcagcttgtactccttgccagaggtgtggtta 634 Query: 381 atcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactccttgctg 440 || || | |||||| | ||||| || |||||||||||||| |||||||||||||| | | Sbjct: 633 ataaaagcggagttagcaaggtccacggtgaccacatcccctgtcttgcactccttccag 574 Query: 441 gcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcg 496 || || ||||| ||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 573 gccccaacgtccgtgagctccagagggtacacttccccagtggccacggagttgcg 518
>gb|BT009140.1| Triticum aestivum clone wl1n.pk0048.a6:fis, full insert mRNA sequence Length = 1005 Score = 168 bits (85), Expect = 1e-38 Identities = 205/245 (83%) Strand = Plus / Minus Query: 261 gcagatttggacgcgatcattccagtcttccgagcataagcgaagatccccccggcctca 320 |||| ||| ||||| |||||||| |||||||| || || || |||||||| || |||||| Sbjct: 728 gcagctttcgacgcaatcattcctgtcttccgggcgtaggcaaagatccctcccgcctca 669 Query: 321 ataaccgggcctgcatcaccaataggcttcagcttgtactgcttgccggatgtgtggtta 380 || || ||||| ||||||||||| || ||||||||||||| |||||| || ||||||||| Sbjct: 668 attacagggccagcatcaccaattggtttcagcttgtactccttgccagaggtgtggtta 609 Query: 381 atcaagaccgagttatcgaggtcgactgtgaccacatccccggtcttgcactccttgctg 440 || || || |||||| | ||||| || |||||||||||||| |||||||||||||| | | Sbjct: 608 ataaaaacggagttagcaaggtccacggtgaccacatcccctgtcttgcactccttccag 549 Query: 441 gcaccgctgtccgcgagctccagggggtacacctccccggtggccacggaattgcggaag 500 || || ||||| ||||||||| ||||||||||| || ||| ||||||| ||||| || Sbjct: 548 gccccaacgtccgtgagctccagagggtacacctctccagtgcccacggagttgcgaaaa 489 Query: 501 aagat 505 ||||| Sbjct: 488 aagat 484
>gb|DQ002408.1| Zea mays gypsy retrotransposon huck, and copia retrotransposon ji, complete sequence; and helitron Mo17_14594, complete sequence Length = 57607 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 271 acgcgatcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggc 330 |||| ||||||| |||||||| ||||| || |||||||| || |||||| | || || | Sbjct: 48981 acgcaatcattcatgtcttccgggcataggcaaagatccctcccgcctcagttacaggac 48922 Query: 331 ctgcatcaccaataggcttcagcttgtactgcttgc 366 | ||||||||||| || ||||| ||||||| ||||| Sbjct: 48921 cagcatcaccaattggtttcaggttgtactccttgc 48886
>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1, xilon1 retrotransposon, helitron B73_14578, gypsy retrotransposon huck1 and ruda retrotransposon, complete sequence Length = 152384 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 271 acgcgatcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggc 330 |||| ||||||| |||||||| ||||| || |||||||| || |||||| | || || | Sbjct: 95737 acgcaatcattcatgtcttccgggcataggcaaagatccctcccgcctcagttacaggac 95678 Query: 331 ctgcatcaccaataggcttcagcttgtactgcttgc 366 | ||||||||||| || ||||| ||||||| ||||| Sbjct: 95677 cagcatcaccaattggtttcaggttgtactccttgc 95642
>ref|NM_129870.2| Arabidopsis thaliana hydro-lyase AT2G43090 mRNA, complete cds Length = 1046 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 767 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 708 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 707 tcaccaatcggcttaagcttgtact 683
>gb|AY063029.1| Arabidopsis thaliana putative 3-isopropylmalate dehydratase, small subunit (At2g43090) mRNA, complete cds Length = 787 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 737 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 678 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 677 tcaccaatcggcttaagcttgtact 653
>gb|AY035158.1| Arabidopsis thaliana putative 3-isopropylmalate dehydratase, small subunit (At2g43090) mRNA, complete cds Length = 970 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 767 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 708 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 707 tcaccaatcggcttaagcttgtact 683
>gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete sequence Length = 45714 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 9026 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 9085 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 9086 tcaccaatcggcttaagcttgtact 9110
>gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence Length = 90283 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 8756 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 8697 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 8696 tcaccaatcggcttaagcttgtact 8672
>emb|BX822010.1|CNS0A8AQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 957 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 746 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 687 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 686 tcaccaatcggcttaagcttgtact 662
>emb|BX821264.1|CNS0A860 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL30ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 917 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 754 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 695 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| |||||||||| Sbjct: 694 tcaccaatcggcttaagcttgtact 670
>gb|BT014469.1| Lycopersicon esculentum clone 133817F, mRNA sequence Length = 1346 Score = 48.1 bits (24), Expect = 0.028 Identities = 63/76 (82%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| ||| | ||||||||||| || || || || ||||| || || || ||| Sbjct: 800 atcattccagcctttcttgcataagcgaaaatgccaccagcttcaatgacaggaccagca 741 Query: 336 tcaccaataggcttca 351 |||||||||||||||| Sbjct: 740 tcaccaataggcttca 725
>gb|AY087084.1| Arabidopsis thaliana clone 31507 mRNA, complete sequence Length = 945 Score = 42.1 bits (21), Expect = 1.7 Identities = 69/85 (81%) Strand = Plus / Minus Query: 276 atcattccagtcttccgagcataagcgaagatccccccggcctcaataaccgggcctgca 335 |||||||||| |||| ||||||||| || || || || || ||||| || || || ||| Sbjct: 767 atcattccagctttcctagcataagcaaatataccaccagcatcaatcactggtccagca 708 Query: 336 tcaccaataggcttcagcttgtact 360 |||||||| ||||| ||||| |||| Sbjct: 707 tcaccaatcggcttaagcttatact 683
>emb|BX324157.4| Zebrafish DNA sequence from clone DKEY-15N1 in linkage group 3, complete sequence Length = 272769 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 gtcttgcactccttgctggca 443 ||||||||||||||||||||| Sbjct: 5358 gtcttgcactccttgctggca 5378
>dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-482L11, complete sequence Length = 170638 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tcaaagtagtagcaaaactg 145 |||||||||||||||||||| Sbjct: 126110 tcaaagtagtagcaaaactg 126129
>gb|AC109606.11| Mus musculus strain C57BL/6J chromosome 5 clone rp23-113m20, complete sequence Length = 210959 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 gctcaactaatctgacagca 237 |||||||||||||||||||| Sbjct: 65291 gctcaactaatctgacagca 65272 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,226,096 Number of Sequences: 3902068 Number of extensions: 3226096 Number of successful extensions: 54672 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54602 Number of HSP's gapped (non-prelim): 67 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)