ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4 38 2.7
2emb|BX897714.6| Zebrafish DNA sequence from clone DKEY-218L23 in... 38 2.7
3gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell ... 38 2.7
4gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 o... 38 2.7

>emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4
          Length = 212370

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     caggcgaagcaagcacaca 58
              |||||||||||||||||||
Sbjct: 104049 caggcgaagcaagcacaca 104031



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>emb|BX897714.6| Zebrafish DNA sequence from clone DKEY-218L23 in linkage group 25,
             complete sequence
          Length = 184435

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    caagcacacataattcagg 67
             |||||||||||||||||||
Sbjct: 72764 caagcacacataattcagg 72746



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>gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 146717

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     caggcgaagcaagcacaca 58
              |||||||||||||||||||
Sbjct: 104418 caggcgaagcaagcacaca 104400



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>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete
             sequence
          Length = 306598

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    caggcgaagcaagcacaca 58
             |||||||||||||||||||
Sbjct: 80745 caggcgaagcaagcacaca 80727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 441,992
Number of Sequences: 3902068
Number of extensions: 441992
Number of successful extensions: 28281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28276
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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