ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PROP_CAVPO (Q64181) Properdin precursor (Factor P) 30 2.1
2PROP_MOUSE (P11680) Properdin precursor (Factor P) 28 6.2

>PROP_CAVPO (Q64181) Properdin precursor (Factor P)|
          Length = 470

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -1

Query: 254 GQSRQHRSCVGGGGVI*CNKARVLLSLVILWELFGCVSDHLYL*LFKFSQWIQDRPFSVE 75
           G   +HR C+G GG    NKA   L     W+L  C        +  +S W    P +V 
Sbjct: 95  GSQLRHRRCIGWGGQCSENKAPGTLE----WQLQACEEQQCCPEMGGWSNWEPWGPCTVT 150

Query: 74  CN 69
           C+
Sbjct: 151 CS 152



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>PROP_MOUSE (P11680) Properdin precursor (Factor P)|
          Length = 464

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -1

Query: 254 GQSRQHRSCVGGGGVI*CNKARVLLSLVILWELFGCVSDHLYL*LFKFSQWIQDRPFSVE 75
           G   +HR CVG GG    N A   L     W+L  C        +  +S+W    P SV 
Sbjct: 92  GSQLRHRRCVGRGGQCSENVAPGTLE----WQLQACEDQPCCPEMGGWSEWGPWGPCSVT 147

Query: 74  CN 69
           C+
Sbjct: 148 CS 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,123,644
Number of Sequences: 219361
Number of extensions: 520637
Number of successful extensions: 1245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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