ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, part... 331 6e-88
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
3gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, co... 44 0.22
4dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
5gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, comple... 42 0.85
6gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, compl... 42 0.85
7ref|XM_628030.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 0.85
8gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 0.85
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.85
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.85
11gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete... 42 0.85
12dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 42 0.85
13tpe|BN000635.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 0.85
14gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 0.85
15gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 m... 40 3.4
16gb|AC150310.1| Latimeria menadoensis clone VMRC4-40C18, complete... 40 3.4
17gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, co... 40 3.4
18gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, comple... 40 3.4
19gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, c... 40 3.4
20emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chro... 40 3.4
21gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome... 40 3.4
22gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome... 40 3.4
23gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, co... 40 3.4
24gb|AC099720.7| Mus musculus chromosome 10, clone RP23-415H15, co... 40 3.4
25gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
26emb|AL357272.10| Human DNA sequence from clone RP11-111J1 on chr... 40 3.4
27gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O13 map... 40 3.4
28gb|AC016636.6| Homo sapiens chromosome 5 clone RP11-313P15, comp... 40 3.4
29gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome... 40 3.4
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
31gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complet... 40 3.4
32gb|AF229163.1|AF229163 Homo sapiens natural resistance-associate... 40 3.4
33gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complet... 40 3.4
34gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, compl... 40 3.4
35gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, compl... 40 3.4
36gb|AC153840.6| Mus musculus 10 BAC RP23-271A22 (Roswell Park Can... 40 3.4
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
38gb|AC138308.3| Mus musculus BAC clone RP23-286G16 from 14, compl... 40 3.4
39gb|AC122846.4| Mus musculus BAC clone RP23-156M18 from 19, compl... 40 3.4
40emb|AL772389.10| Mouse DNA sequence from clone RP23-106D7 on chr... 40 3.4
41gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, com... 40 3.4 
>gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, partial cds
          Length = 956

 Score =  331 bits (167), Expect = 6e-88
 Identities = 209/221 (94%), Gaps = 4/221 (1%)
 Strand = Plus / Minus

                                                                       
Query: 40  gaaagcttatttgctactacattataattgttacattcaactgaaaacggccggtcttga 99
           |||||||||||||||||| |||||  |||||||||| |||||||| ||||||||||||||
Sbjct: 943 gaaagcttatttgctactgcatta--attgttacatccaactgaagacggccggtcttga 886

                                                                       
Query: 100 atccactgcgagaatttgaagagctagagatacagatgatcagatacacaaccgaacagt 159
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 885 atccactgcgagaatttgaacagctagagatacagatgatcagatacacaaccgaacagt 826

                                                                       
Query: 160 tcccataagatcacaagagagagtagcacacgcgccttgttgcattatattacaccacca 219
           || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tcacataagatcaca--agagagtagcacacgcgccttgttgcattatattacaccacca 768

                                                    
Query: 220 ccacctacacacgaccggtgttgcctgctttgcccagcgac 260
           ||| |||||||||| ||| ||||||||||||||||||||||
Sbjct: 767 ccatctacacacgaacggcgttgcctgctttgcccagcgac 727
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 11       atcgataaattttcttttaaat 32
                ||||||||||||||||||||||
Sbjct: 20178675 atcgataaattttcttttaaat 20178696
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>gb|AC025674.10| Homo sapiens chromosome 8, clone RP11-513O17, complete sequence
          Length = 152451

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 113   atttgaagagctagagatacag 134
             ||||||||||||||||||||||
Sbjct: 75017 atttgaagagctagagatacag 75038
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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0007G12
          Length = 111819

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 11    atcgataaattttcttttaaat 32
             ||||||||||||||||||||||
Sbjct: 44675 atcgataaattttcttttaaat 44696
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>gb|AC011284.3| Homo sapiens BAC clone CTD-2326L19 from 7, complete sequence
          Length = 92959

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   ttgaagagctagagatacaga 135
             |||||||||||||||||||||
Sbjct: 59521 ttgaagagctagagatacaga 59541
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>gb|AC142336.1| Pan troglodytes BAC clone RP43-39E5 from 7, complete sequence
          Length = 75539

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   ttgaagagctagagatacaga 135
             |||||||||||||||||||||
Sbjct: 47729 ttgaagagctagagatacaga 47709
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>ref|XM_628030.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_1920),
            partial mRNA
          Length = 13839

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 17   aaattttcttttaaatggaga 37
            |||||||||||||||||||||
Sbjct: 9099 aaattttcttttaaatggaga 9119
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
              sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     atcgataaattttcttttaaa 31
              |||||||||||||||||||||
Sbjct: 403714 atcgataaattttcttttaaa 403734
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 11       atcgataaattttcttttaaa 31
                |||||||||||||||||||||
Sbjct: 18873034 atcgataaattttcttttaaa 18873014
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 11       atcgataaattttcttttaaa 31
                |||||||||||||||||||||
Sbjct: 26509234 atcgataaattttcttttaaa 26509214
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>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence
          Length = 179954

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 58    acattataattgttacattca 78
             |||||||||||||||||||||
Sbjct: 88020 acattataattgttacattca 88000
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1340_C08
          Length = 192167

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    atcgataaattttcttttaaa 31
             |||||||||||||||||||||
Sbjct: 54505 atcgataaattttcttttaaa 54485
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>tpe|BN000635.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx106 gene
           for class III peroxidase 106 precursor, exons 1-2
          Length = 1574

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  atcgataaattttcttttaaa 31
           |||||||||||||||||||||
Sbjct: 475 atcgataaattttcttttaaa 495
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     atcgataaattttcttttaaa 31
              |||||||||||||||||||||
Sbjct: 402633 atcgataaattttcttttaaa 402653
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>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete
             sequence
          Length = 190697

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   agagctagagatacagatga 138
             ||||||||||||||||||||
Sbjct: 35605 agagctagagatacagatga 35586
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>gb|AC150310.1| Latimeria menadoensis clone VMRC4-40C18, complete sequence
          Length = 170774

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 57    tacattataattgttacattcaactgaaaacg 88
             ||||||||||||  |||||| |||||||||||
Sbjct: 13870 tacattataattaatacattgaactgaaaacg 13901
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>gb|AC103380.13| Mus musculus chromosome 1, clone RP24-263A16, complete sequence
          Length = 173136

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   agagctagagatacagatga 138
             ||||||||||||||||||||
Sbjct: 16259 agagctagagatacagatga 16278
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>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence
          Length = 191755

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 212    caccaccaccacctacacac 231
              ||||||||||||||||||||
Sbjct: 153105 caccaccaccacctacacac 153124
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>gb|AC117662.13| Mus musculus chromosome 16, clone RP23-351D19, complete sequence
          Length = 293822

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    caccaccaccacctacacac 231
              ||||||||||||||||||||
Sbjct: 167383 caccaccaccacctacacac 167364
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>emb|CT010426.3| Mouse DNA sequence from clone RP23-17A17 on chromosome 17, complete
             sequence
          Length = 221525

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   caccaccaccacctacacac 231
             ||||||||||||||||||||
Sbjct: 94535 caccaccaccacctacacac 94554
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>gb|AC122815.3| Mus musculus BAC clone RP23-234O3 from chromosome 2, complete sequence
          Length = 176452

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gaaggaaagcttatttgcta 55
              ||||||||||||||||||||
Sbjct: 105241 gaaggaaagcttatttgcta 105260
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>gb|AC131722.4| Mus musculus BAC clone RP23-143M5 from chromosome 9, complete sequence
          Length = 228144

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    gagctagagatacagatgat 139
              ||||||||||||||||||||
Sbjct: 164138 gagctagagatacagatgat 164119
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>gb|AC118608.7| Mus musculus chromosome 17, clone RP23-478J10, complete sequence
          Length = 196566

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   caccaccaccacctacacac 231
             ||||||||||||||||||||
Sbjct: 19345 caccaccaccacctacacac 19364
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>gb|AC099720.7| Mus musculus chromosome 10, clone RP23-415H15, complete sequence
          Length = 212928

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tttcttttaaatggagaagg 40
             ||||||||||||||||||||
Sbjct: 94046 tttcttttaaatggagaagg 94027
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>gb|AC121327.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0016O23, complete sequence
          Length = 149400

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tcgataaattttcttttaaa 31
             ||||||||||||||||||||
Sbjct: 48047 tcgataaattttcttttaaa 48028
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>emb|AL357272.10| Human DNA sequence from clone RP11-111J1 on chromosome 6, complete
             sequence
          Length = 94829

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ttttaaatggagaaggaaag 44
             ||||||||||||||||||||
Sbjct: 32145 ttttaaatggagaaggaaag 32164
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>gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete
             sequence
          Length = 119753

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    atcgataaattttcttttaa 30
             ||||||||||||||||||||
Sbjct: 51218 atcgataaattttcttttaa 51199
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>gb|AC016636.6| Homo sapiens chromosome 5 clone RP11-313P15, complete sequence
          Length = 55579

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    tttcttttaaatggagaagg 40
             ||||||||||||||||||||
Sbjct: 47768 tttcttttaaatggagaagg 47787
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>gb|AC153359.4| Mus musculus BAC clone RP23-477I1 from chromosome 9, complete sequence
          Length = 195269

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    gagctagagatacagatgat 139
              ||||||||||||||||||||
Sbjct: 168771 gagctagagatacagatgat 168790
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       tcgataaattttcttttaaa 31
                ||||||||||||||||||||
Sbjct: 23859232 tcgataaattttcttttaaa 23859213
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>gb|AC130814.3| Homo sapiens BAC clone RP11-599B8 from 2, complete sequence
          Length = 129660

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   aggaaagcttatttgctact 57
            ||||||||||||||||||||
Sbjct: 7147 aggaaagcttatttgctact 7128
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>gb|AF229163.1|AF229163 Homo sapiens natural resistance-associated macrophage protein 1
             (SLC11A1) gene, complete cds, alternatively spliced; and
             nuclear LIM interactor-interacting factor (NLI-IF) gene,
             complete cds
          Length = 32198

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   caccaccaccacctacacac 231
             ||||||||||||||||||||
Sbjct: 31094 caccaccaccacctacacac 31113
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>gb|AC092594.2| Homo sapiens BAC clone RP11-78J22 from 2, complete sequence
          Length = 159471

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  aggaaagcttatttgctact 57
           ||||||||||||||||||||
Sbjct: 928 aggaaagcttatttgctact 909
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>gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, complete sequence
          Length = 170043

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tttcttttaaatggagaagg 40
              ||||||||||||||||||||
Sbjct: 167377 tttcttttaaatggagaagg 167396
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>gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, complete sequence
          Length = 197918

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    gaaggaaagcttatttgcta 55
             ||||||||||||||||||||
Sbjct: 37432 gaaggaaagcttatttgcta 37451
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>gb|AC153840.6| Mus musculus 10 BAC RP23-271A22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210217

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tttcttttaaatggagaagg 40
              ||||||||||||||||||||
Sbjct: 184229 tttcttttaaatggagaagg 184248
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 12       tcgataaattttcttttaaa 31
                ||||||||||||||||||||
Sbjct: 24170901 tcgataaattttcttttaaa 24170882
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>gb|AC138308.3| Mus musculus BAC clone RP23-286G16 from 14, complete sequence
          Length = 148679

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gaaggaaagcttatttgcta 55
              ||||||||||||||||||||
Sbjct: 111508 gaaggaaagcttatttgcta 111527
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>gb|AC122846.4| Mus musculus BAC clone RP23-156M18 from 19, complete sequence
          Length = 217949

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     gaaggaaagcttatttgcta 55
              ||||||||||||||||||||
Sbjct: 134693 gaaggaaagcttatttgcta 134674
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>emb|AL772389.10| Mouse DNA sequence from clone RP23-106D7 on chromosome 2, complete
             sequence
          Length = 211326

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    gaaggaaagcttatttgcta 55
             ||||||||||||||||||||
Sbjct: 22595 gaaggaaagcttatttgcta 22576
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>gb|AC138106.9| Mus musculus chromosome 1, clone RP23-278C19, complete sequence
          Length = 173026

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    agagctagagatacagatga 138
              ||||||||||||||||||||
Sbjct: 103588 agagctagagatacagatga 103607


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,466,587
Number of Sequences: 3902068
Number of extensions: 3466587
Number of successful extensions: 88830
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88550
Number of HSP's gapped (non-prelim): 278
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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