Clone Name | rbart38e09 |
---|---|
Clone Library Name | barley_pub |
>gb|AY110553.1| Zea mays CL22344_1 mRNA sequence Length = 656 Score = 103 bits (52), Expect = 5e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 379 tgatgtgcggcatcacccacgccctgtactccgggtagaggtgcttgtggtcgggctcga 438 |||||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 247 tgatgtacggcagcacccacgcctcgtactgcgggtagaggtgcttgtggtcgggctcga 306 Query: 439 tgaacccctgca 450 |||||||||||| Sbjct: 307 tgaacccctgca 318 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Plus Query: 272 gacgacctgcttgccgacgttgcggccatggaagaggccgatgagcgc 319 ||||| |||||| ||||||||||| || |||||||| || |||||||| Sbjct: 140 gacgagctgctttccgacgttgcgaccgtggaagagtcctatgagcgc 187
>ref|XM_473036.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1038 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 276 acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 335 ||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| Sbjct: 1016 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 957 Query: 336 agcccgtcggcgacgtcctcgacgtac 362 ||||| |||||||||||||| |||||| Sbjct: 956 agcccttcggcgacgtcctccacgtac 930
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 276 acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 335 ||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| Sbjct: 24833555 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 24833614 Query: 336 agcccgtcggcgacgtcctcgacgtac 362 ||||| |||||||||||||| |||||| Sbjct: 24833615 agcccttcggcgacgtcctccacgtac 24833641
>dbj|AK109382.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-F02, full insert sequence Length = 1343 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 276 acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 335 ||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| Sbjct: 1124 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 1065 Query: 336 agcccgtcggcgacgtcctcgacgtac 362 ||||| |||||||||||||| |||||| Sbjct: 1064 agcccttcggcgacgtcctccacgtac 1038
>dbj|AK069136.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008C06, full insert sequence Length = 1269 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 276 acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 335 ||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| Sbjct: 1062 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 1003 Query: 336 agcccgtcggcgacgtcctcgacgtac 362 ||||| |||||||||||||| |||||| Sbjct: 1002 agcccttcggcgacgtcctccacgtac 976
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 276 acctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcg 335 ||||||||||||||||||||||| |||||| ||||||||||| | |||||| ||| Sbjct: 95271 acctgcttgccgacgttgcggccggagaagagcccgatgagcgcggccggcgcgttctcc 95330 Query: 336 agcccgtcggcgacgtcctcgacgtac 362 ||||| |||||||||||||| |||||| Sbjct: 95331 agcccttcggcgacgtcctccacgtac 95357
>gb|AY227927.1| Xeralictus bicuspidariae long-wavelength rhodopsin gene, partial cds Length = 970 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Minus Query: 143 tacgattgcgattgcgattgcgat 166 |||||||||||||||||||||||| Sbjct: 257 tacgattgcgattgcgattgcgat 234 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tacgattgcgattgcgattgcgat 166 ||||||| |||||||||||||||| Sbjct: 263 tacgattacgattgcgattgcgat 240
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 aggccgatgagcgctccaggcgcggcctcgagcccgtcggcgacgtcctcg 356 |||||||| ||||| | ||||| || |||||||||||| ||||||||||| Sbjct: 385224 aggccgatcagcgcccgcggcgccgcgtcgagcccgtcgacgacgtcctcg 385274
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 aggccgatgagcgctccaggcgcggcctcgagcccgtcggcgacgtcctcg 356 |||||||| ||||| | ||||| || |||||||||||| ||||||||||| Sbjct: 1704448 aggccgatcagcgcccgcggcgccgcgtcgagcccgtcgacgacgtcctcg 1704498
>gb|AC010070.8| Drosophila melanogaster 3L BAC RP98-18E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171622 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 144 acgattgcgattgcgattgcgat 166 ||||||||||||||||||||||| Sbjct: 10459 acgattgcgattgcgattgcgat 10481
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 144 acgattgcgattgcgattgcgat 166 ||||||||||||||||||||||| Sbjct: 1934979 acgattgcgattgcgattgcgat 1934957 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 1934972 cgattgcgattgcgattgcg 1934953
>gb|AC010751.5| Drosophila melanogaster 3L BAC RP98-9A23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181437 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 144 acgattgcgattgcgattgcgat 166 ||||||||||||||||||||||| Sbjct: 31439 acgattgcgattgcgattgcgat 31417
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Plus Query: 306 aggccgatgagcgctccaggcgcggcctcgagcccgtcggcgacgtcctcg 356 |||||||| ||||| | ||||| || |||||||||||| ||||||||||| Sbjct: 1154715 aggccgatcagcgcccgcggcgccgcgtcgagcccgtcgacgacgtcctcg 1154765
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 278 ctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcgag 337 |||||||||||| ||||||||| ||| || || ||||| ||| | || || |||||||| Sbjct: 6871070 ctgcttgccgacattgcggccagtgaatagcccaatgagagctgccggtgccgcctcgag 6871011 Query: 338 cccgtcggcgacgtcctcgacgtacaccacc 368 ||| || ||| |||||| || ||||||||| Sbjct: 6871010 cccctcaacgatgtcctccacatacaccacc 6870980
>gb|AC006933.3|AC006933 Drosophila melanogaster, chromosome 3L, region 73B7-73D6, BAC clone BACR48E21, complete sequence Length = 186002 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 144 acgattgcgattgcgattgcgat 166 ||||||||||||||||||||||| Sbjct: 13931 acgattgcgattgcgattgcgat 13909
>gb|AE003525.4| Drosophila melanogaster chromosome 3L, section 60 of 83 of the complete sequence Length = 196398 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 144 acgattgcgattgcgattgcgat 166 ||||||||||||||||||||||| Sbjct: 21123 acgattgcgattgcgattgcgat 21145
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 278 ctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcgag 337 |||||||||||| ||||||||| ||| || || ||||| ||| | || || |||||||| Sbjct: 6870949 ctgcttgccgacattgcggccagtgaatagcccaatgagagctgccggtgccgcctcgag 6870890 Query: 338 cccgtcggcgacgtcctcgacgtacaccacc 368 ||| || ||| |||||| || ||||||||| Sbjct: 6870889 cccctcaacgatgtcctccacatacaccacc 6870859
>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144563 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Plus Query: 278 ctgcttgccgacgttgcggccatggaagaggccgatgagcgctccaggcgcggcctcgag 337 |||||||||||| ||||||||| ||| || || ||||| ||| | || || |||||||| Sbjct: 90968 ctgcttgccgacattgcggccagtgaatagcccaatgagagctgccggtgccgcctcgag 91027 Query: 338 cccgtcggcgacgtcctcgacgtacaccacc 368 ||| || ||| |||||| || ||||||||| Sbjct: 91028 cccctcaacgatgtcctccacatacaccacc 91058
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgatg 167 ||||||||||||||||||||||| Sbjct: 1729219 cgattgcgattgcgattgcgatg 1729241 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 1729215 attgcgattgcgattgcgat 1729234
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 2164637 cgattgcgattgcgattgcgat 2164616 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 2009433 cgattgcgattgcgattgcgat 2009412 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 2009427 cgattgcgattgcgattgcgat 2009406 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 2009438 gattgcgattgcgattgcgat 2009418
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 441075 cgattgcgattgcgattgcgat 441054 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 441079 attgcgattgcgattgcgat 441060 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 441069 cgattgcgattgcgattgcg 441050
>ref|XM_367857.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG07761.4) partial mRNA Length = 681 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 ctcggtgtcgggggtggtgagcttga 273 |||||| ||||||||||||||||||| Sbjct: 150 ctcggtctcgggggtggtgagcttga 125
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 3288650 cgattgcgattgcgattgcgat 3288629 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 3288654 attgcgattgcgattgcgat 3288635 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 3288644 cgattgcgattgcgattgcg 3288625
>ref|XM_708711.1| Candida albicans SC5314 hypothetical protein (CaO19.671), mRNA Length = 2010 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 714 cgattgcgattgcgattgcgat 693 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 719 gattgcgattgcgattgcgat 699
>ref|XM_756773.1| Ustilago maydis 521 hypothetical protein (UM05719.1) partial mRNA Length = 2070 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 1959 cgattgcgattgcgattgcgat 1938 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 1953 cgattgcgattgcgattgcg 1934
>ref|XM_567050.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA07340) partial mRNA Length = 2395 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 1821 cgattgcgattgcgattgcgat 1800 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 1815 cgattgcgattgcgattgcgat 1794 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 1826 gattgcgattgcgattgcgat 1806
>ref|XM_567131.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA07840) partial mRNA Length = 3452 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 141 cgattgcgattgcgattgcgat 120
>emb|X70294.1|HSATPABA H.salinarium genes atpA and atpB Length = 3366 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 340 cgtcggcgacgtcctcgacgta 361 |||||||||||||||||||||| Sbjct: 3261 cgtcggcgacgtcctcgacgta 3240
>emb|X58188.1|DMTROPONI D.melanogaster tn1 gene Length = 12871 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 193 cgattgcgattgcgattgcgat 172 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 187 cgattgcgattgcgattgcgat 166
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 44.1 bits (22), Expect = 0.40 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcg-atgcgaata 173 |||||||||||||||||||| ||||||||| Sbjct: 263309 cgattgcgattgcgattgcgaatgcgaata 263338 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 263305 attgcgattgcgattgcgat 263324
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 3019824 cgattgcgattgcgattgcgat 3019803 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 3019828 attgcgattgcgattgcgat 3019809 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 3019818 cgattgcgattgcgattgcg 3019799
>gb|DQ115404.1| Malus x domestica starch branching enzyme I (SbeI) gene, complete cds Length = 8078 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 1487 cgattgcgattgcgattgcgat 1466 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 1492 gattgcgattgcgattgcgat 1472
>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187438 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 63327 cgattgcgattgcgattgcgat 63348
>gb|AC023713.4| Drosophila melanogaster X BAC RP98-24A2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181178 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 14228 cgattgcgattgcgattgcgat 14249
>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177835 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 173228 cgattgcgattgcgattgcgat 173249
>gb|AC011614.8| Drosophila melanogaster, chromosome X, region 16F-17A, BAC clone BACR48L05, complete sequence Length = 177138 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 121317 cgattgcgattgcgattgcgat 121296 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 121311 cgattgcgattgcgattgcgat 121290
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 ttgcgattgcgattgcgatgcg 169 |||||||||||||||||||||| Sbjct: 23543292 ttgcgattgcgattgcgatgcg 23543313
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 ttgcgattgcgattgcgatgcg 169 |||||||||||||||||||||| Sbjct: 24256 ttgcgattgcgattgcgatgcg 24277
>gb|AE005102.1| Halobacterium sp. NRC-1 section 133 of 170 of the complete genome Length = 11510 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 cgtcggcgacgtcctcgacgta 361 |||||||||||||||||||||| Sbjct: 3484 cgtcggcgacgtcctcgacgta 3505
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 133865 cgattgcgattgcgattgcgat 133844 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 133859 cgattgcgattgcgattgcgat 133838 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 133853 cgattgcgattgcgattgcgat 133832 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcga 165 ||||||||||||||||||||| Sbjct: 133847 cgattgcgattgcgattgcga 133827
>gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 of 74 of the complete sequence Length = 299804 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 264524 cgattgcgattgcgattgcgat 264545 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 264518 cgattgcgattgcgattgcgat 264539
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete sequence Length = 318699 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 187875 cgattgcgattgcgattgcgat 187896
>gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 of 74 of the complete sequence Length = 316794 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcgat 166 |||||||||||||||||||||| Sbjct: 306727 cgattgcgattgcgattgcgat 306706
>dbj|AB001919.1| Oryza sativa (japonica cultivar-group) gene for phospholipase D, complete cds Length = 5169 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 ttgcgattgcgattgcgatgcg 169 |||||||||||||||||||||| Sbjct: 28 ttgcgattgcgattgcgatgcg 49
>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16, complete sequence Length = 175425 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gcggcctcgagcccgtcggcgacgtcctcgacg 359 ||||||||||| | |||||||||| |||||||| Sbjct: 114873 gcggcctcgaggcggtcggcgacggcctcgacg 114841
>ref|XM_658674.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6162.2), mRNA Length = 915 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcga 165 ||||||||||||||||||||| Sbjct: 135 cgattgcgattgcgattgcga 115
>ref|XM_964115.1| PREDICTED: Tribolium castaneum similar to thyroid hormone receptor interactor 3 (LOC657668), mRNA Length = 399 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ttttcgtccccattcaacaac 138 ||||||||||||||||||||| Sbjct: 236 ttttcgtccccattcaacaac 216
>gb|AC023692.5| Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163090 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 55750 gattgcgattgcgattgcgat 55770
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcga 165 ||||||||||||||||||||| Sbjct: 1085039 cgattgcgattgcgattgcga 1085019
>ref|NM_131978.1| Drosophila melanogaster CG15465-RA (CG15465), mRNA Length = 1269 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 335 gattgcgattgcgattgcgat 315
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgatg 167 ||||||||||||||||||||| Sbjct: 2450117 attgcgattgcgattgcgatg 2450097
>tpg|BK001301.1| TPA: TPA_exp: Emericella nidulans prenylcystein carboxymethyl transferase (ste14) gene, complete cds Length = 969 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcga 165 ||||||||||||||||||||| Sbjct: 135 cgattgcgattgcgattgcga 115
>gb|BT022700.1| Drosophila melanogaster IP12315 full insert cDNA Length = 1982 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 582 gattgcgattgcgattgcgat 562
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gcggcctcgagcccgtcggcgacgtcctcgacg 359 ||||||||||| | |||||||||| |||||||| Sbjct: 19246085 gcggcctcgaggcggtcggcgacggcctcgacg 19246053
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 tttacaaccatgtttggcttt 119 ||||||||||||||||||||| Sbjct: 2433279 tttacaaccatgtttggcttt 2433259
>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete sequence Length = 303602 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gattgcgattgcgattgcgat 166 ||||||||||||||||||||| Sbjct: 155900 gattgcgattgcgattgcgat 155880
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 gcggcctcgagcccgtcggcgacgtcctcgacg 359 ||||||||||| | |||||||||| |||||||| Sbjct: 19405634 gcggcctcgaggcggtcggcgacggcctcgacg 19405602
>dbj|D31792.1| Streptomyces griseus DNA for serine/threonine protein kinases, complete cds Length = 3866 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 gcgcggcctcgagcccgtcggcgacgtcc 353 ||||||| |||||||||||||||||||| Sbjct: 2481 gcgcggcggcgagcccgtcggcgacgtcc 2453
>gb|AY460402.1| Stenomesson flavum AtpB (atpB) gene, partial cds; atpB-rbcL intergenic spacer, complete sequence; and RbcL (rbcL) gene, partial cds; chloroplast Length = 1022 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 412 attgcgattgcgattgcgat 431
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 1262701 cgattgcgattgcgattgcg 1262682
>ref|XM_724745.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01997) partial mRNA Length = 2211 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 accatgtttggctttttcgt 124 |||||||||||||||||||| Sbjct: 1008 accatgtttggctttttcgt 989
>emb|BX322532.2| Human DNA sequence from clone RP11-543A11 on chromosome 1 Contains the 5' end of the gene for a novel protein (FLJ16613) and the 5' end of one variant of the OPN3 gene for opsin 3 (encephalopsin, panopsin), complete sequence Length = 40220 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 tcactcggtgtcgggggtggtgag 268 ||||| |||||||||||||||||| Sbjct: 23243 tcactaggtgtcgggggtggtgag 23266
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 cggcgacgtcctcgacgtacacca 366 ||||||||||||||||| |||||| Sbjct: 3539753 cggcgacgtcctcgacgaacacca 3539776
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 cctcgagcccgtcggcgacg 350 |||||||||||||||||||| Sbjct: 1937276 cctcgagcccgtcggcgacg 1937295
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gtcggcgacgtcctcgacgt 360 |||||||||||||||||||| Sbjct: 36019 gtcggcgacgtcctcgacgt 36000
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cttgatgtgcggcatcaccc 396 |||||||||||||||||||| Sbjct: 4801713 cttgatgtgcggcatcaccc 4801694
>gb|AC010040.6| Drosophila melanogaster 3L BAC RP98-13E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 159672 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 acgattgcgattgcgattgc 163 |||||||||||||||||||| Sbjct: 39200 acgattgcgattgcgattgc 39181
>gb|AC104605.7| Drosophila melanogaster X BAC RP98-11C13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167366 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 130744 attgcgattgcgattgcgat 130763
>gb|AC116660.1| Drosophila melanogaster X BAC RP98-27C7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 151605 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 22547 attgcgattgcgattgcgat 22566
>ref|XM_931645.1| PREDICTED: Homo sapiens zinc finger protein 62 homolog (mouse), transcript variant 3 (ZFP62), mRNA Length = 2672 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 316 gcgctccaggcgcggcctcgagcccgtcggcg 347 ||||||||||||||||| ||| ||||||||| Sbjct: 67 gcgctccaggcgcggccaggaggccgtcggcg 36
>ref|XM_926858.1| PREDICTED: Homo sapiens zinc finger protein 62 homolog (mouse), transcript variant 1 (ZFP62), mRNA Length = 4846 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 316 gcgctccaggcgcggcctcgagcccgtcggcg 347 ||||||||||||||||| ||| ||||||||| Sbjct: 67 gcgctccaggcgcggccaggaggccgtcggcg 36
>gb|AC016572.6| Homo sapiens chromosome 5 clone CTB-22L19, complete sequence Length = 143687 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 316 gcgctccaggcgcggcctcgagcccgtcggcg 347 ||||||||||||||||| ||| ||||||||| Sbjct: 26474 gcgctccaggcgcggccaggaggccgtcggcg 26505
>gb|AC008353.4|AC008353 Drosophila melanogaster, chromosome 2R, region 60C-60C, BAC clone BACR02A05, complete sequence Length = 172826 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgcgattgcgattgcgatgc 168 |||||||||||||||||||| Sbjct: 122398 tgcgattgcgattgcgatgc 122417
>gb|AC011758.6|AC011758 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone BACR25I22, complete sequence Length = 164942 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 122887 attgcgattgcgattgcgat 122868
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gctcttcaatttctagaagt 51 |||||||||||||||||||| Sbjct: 15566880 gctcttcaatttctagaagt 15566899
>gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) genomic sequence Length = 41352 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 acgattgcgattgcgattgc 163 |||||||||||||||||||| Sbjct: 37884 acgattgcgattgcgattgc 37903
>dbj|AP005886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0689B09 Length = 144932 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gctcttcaatttctagaagt 51 |||||||||||||||||||| Sbjct: 87735 gctcttcaatttctagaagt 87754
>gb|AF104994.1|AF104994 Streptomyces coelicolor A3(2) periplasmic binding protein (atrA), permease (AtrB), ATP-binding protein (atrC), methyltransferase (metZ), signal peptidase, Ni-containing superoxide dismutase (sodN), puromycin N-acetyltransferase (pat), and geranyl transferase (gtr) genes, complete cds; and unknown genes Length = 8568 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gtcggcgacgtcctcgacgt 360 |||||||||||||||||||| Sbjct: 2693 gtcggcgacgtcctcgacgt 2712
>gb|AY551167.1| Proteocephalus macrocephalus 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 940 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 770 cgattgcgattgcgattgcg 789
>emb|AJ324359.1|HSA324359 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DN21C Length = 660 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 316 gcgctccaggcgcggcctcgagcccgtcggcg 347 ||||||||||||||||| ||| ||||||||| Sbjct: 230 gcgctccaggcgcggccaggaggccgtcggcg 261
>ref|XM_572125.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 4636 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgattgcgattgcgattgcg 164 |||||||||||||||||||| Sbjct: 1416 cgattgcgattgcgattgcg 1397
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 225079 attgcgattgcgattgcgat 225060
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete sequence Length = 281917 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 acgattgcgattgcgattgc 163 |||||||||||||||||||| Sbjct: 226314 acgattgcgattgcgattgc 226295
>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete sequence Length = 310958 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 tgcgattgcgattgcgatgc 168 |||||||||||||||||||| Sbjct: 77576 tgcgattgcgattgcgatgc 77595
>gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 of 74 of the complete sequence Length = 290042 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 attgcgattgcgattgcgat 166 |||||||||||||||||||| Sbjct: 155845 attgcgattgcgattgcgat 155826
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cttgatgtgcggcatcaccc 396 |||||||||||||||||||| Sbjct: 4806624 cttgatgtgcggcatcaccc 4806605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,763,750 Number of Sequences: 3902068 Number of extensions: 2763750 Number of successful extensions: 52459 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51421 Number of HSP's gapped (non-prelim): 1001 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)