ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 42 7e-04
2GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 42 0.001
3K1267_MOUSE (Q80TG1) Protein KIAA1267 28 9.9

>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = -2

Query: 398 GRRPLSGGDSI-GFLDLAVGCNMFWMEALRRMFGVTFLDAGRTPLL 264
           GR   SGGD+  G LDLA+GC +  + A  R+ G++ +DA  TPLL
Sbjct: 150 GRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLL 195



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>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 392 RPLSGGDSIGFLDLAVGCNMFWMEALRRMFGVTFLDAGRTPLL 264
           +P  GGD +GF+D+ +G  + W  A+ ++ G   +D  RTP L
Sbjct: 154 KPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPAL 196



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>K1267_MOUSE (Q80TG1) Protein KIAA1267|
          Length = 1036

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 29  SHQVLLHVPKHTSDSRLISTMSTTTWESTGPMQVAAFSWQAGRRR 163
           S+    H P H+   R +ST S T+  ++   QVAA + Q  RRR
Sbjct: 741 SYLTATHHPPHSPLVRQLSTSSDTSTPTSSGSQVAASTSQPVRRR 785


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,589,866
Number of Sequences: 219361
Number of extensions: 776689
Number of successful extensions: 2344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2344
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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