ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart38e06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, complete cds Length = 1372 Score = 858 bits (433), Expect = 0.0 Identities = 455/465 (97%) Strand = Plus / Minus Query: 3 agacagtggacaaatataggttgctcttgcttccttattccaacacaagatacaaacata 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1370 agacagtggacaaatataggttgctcttgcttccttattccaacacaagatacaaacata 1311 Query: 63 gactcttgagttaacacccgacacgtacggtcgactaaaaacaagccatgaccaagaaat 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1310 gactcttgagttaacacccgacacgtacggtcgactaaaaacaagccatgaccaagaaat 1251 Query: 123 ctaacaaaatggagggaattctttttgtgannnnnnnnatggcaaatgaggtggtagaaa 182 |||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 1250 ctaacaaaatggagggaattttttttgtgattttttttatggcaaatgaggtggtagaaa 1191 Query: 183 gcagctgcaggctcccagtagaagtgatagatcactctacttggtgtactccattgccca 242 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 gcagcagcaggctcccagtagaagtgatagatcactctacttggtgtactccattgccca 1131 Query: 243 gaagttcgcaaagatgtagctggccttgacgcctgtaaaccctgcagccttggctagctt 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 gaagttcgcaaagatgtagctggccttgacgcctgtaaaccctgcagccttggctagctt 1071 Query: 303 ctcgaagtccctgaggttcctttccttgccgccggggctgtacgccagcaagctggcgtc 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 ctcgaagtccctgaggttcctttccttgccgccggggctgtacgccagcaagctggcgtc 1011 Query: 363 cacacagattaacccctgcgcgttgtttgtcgcgtccgggttcactggcaggatacattc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1010 cacacagattaacccctgcgcgttgtttgtcgcgtccgggttcactggcaggatacattc 951 Query: 423 cacgttgatcaccttaccatgcgcgggcagtgcgtcgtagcagtt 467 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 cacgttgatcaccttaccatgcgcgggcagtgcgtcgtagcagtt 906
>gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltransferase (OMT2) mRNA, complete cds Length = 1436 Score = 97.6 bits (49), Expect = 3e-17 Identities = 199/249 (79%) Strand = Plus / Minus Query: 219 ctacttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgt 278 |||||| ||||||||||| |||||||||| || ||||||||| ||||| |||||| || Sbjct: 1130 ctacttagtgtactccatggcccagaagtcggcgaagatgtaggtggccgtgacgctggt 1071 Query: 279 aaaccctgcagccttggctagcttctcgaagtccctgaggttcctttccttgccgccggg 338 ||| || || ||||||| |||||||| | ||||||| ||| ||| ||||||||||| || Sbjct: 1070 aaagccggcgcccttggcgagcttctccaggtccctgtggtacctctccttgccgcccgg 1011 Query: 339 gctgtacgccagcaagctggcgtccacacagattaacccctgcgcgttgtttgtcgcgtc 398 ||||||| | |||| ||| || || ||| ||| ||||||| ||| || ||||| Sbjct: 1010 gctgtacacaagcaggctcaaatcgacggcgatcaacgcctgcgcaccgttggtggcgtc 951 Query: 399 cgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggcagtgcgtc 458 ||| ||||| |||| ||| || || |||||||| || || |||| |||||||| ||||| Sbjct: 950 cggattcaccggcaagatgcactcgacgttgatgactttggcatgggcgggcagcgcgtc 891 Query: 459 gtagcagtt 467 ||||||||| Sbjct: 890 gtagcagtt 882
>gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full insert mRNA sequence Length = 1314 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 397 tccgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggcagtgcg 456 ||||||||||| |||||||| || |||||| | |||||| || ||||| ||||| ||| Sbjct: 898 tccgggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcg 839 Query: 457 tcgtagcagtt 467 ||||||||||| Sbjct: 838 tcgtagcagtt 828
>gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferase (COMT1) mRNA, complete cds Length = 1371 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 397 tccgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggcagtgcg 456 ||||||||||| |||||||| || |||||| | |||||| || ||||| ||||| ||| Sbjct: 978 tccgggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggcagcgcg 919 Query: 457 tcgtagcagtt 467 ||||||||||| Sbjct: 918 tcgtagcagtt 908
>gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase mRNA, complete cds Length = 1233 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 391 gtcgcgtccgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggc 450 ||||| ||||||||||| |||||||| || |||||| | |||||| || ||||| ||| Sbjct: 973 gtcgcctccgggttcacaggcaggatgcactccacgagcaccaccttgccgtgcgccggc 914 Query: 451 agtgcgtcgtagcagtt 467 | |||||||||||||| Sbjct: 913 aacgcgtcgtagcagtt 897
>gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O-methyltransferase mRNA, complete cds Length = 1438 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Minus Query: 397 tccgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggcagtgcg 456 ||||||||||| |||||||| || || ||| | |||||| || ||||| ||||| ||| Sbjct: 966 tccgggttcaccggcaggatgcactcgacgagcaccaccttgccgtgcgccggcagcgcg 907 Query: 457 tcgtagcagtt 467 ||||||||||| Sbjct: 906 tcgtagcagtt 896
>emb|AJ586105.1| Lolium multiflorum partial mRNA for putative caffeate o-methyltransferase (comt gene) Length = 878 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Minus Query: 397 tccgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggcagtgcg 456 ||||||||||| |||||||| || || ||| | |||||| || ||||| ||||| ||| Sbjct: 799 tccgggttcaccggcaggatgcactcgacgagcaccaccttgccgtgcgccggcagcgcg 740 Query: 457 tcgtagcagtt 467 ||||||||||| Sbjct: 739 tcgtagcagtt 729
>gb|AC027510.7| Homo sapiens chromosome 18, clone RP11-118I2, complete sequence Length = 159205 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 catgaccaagaaatctaacaaaatgg 134 ||||||||||||||||||| |||||| Sbjct: 45540 catgaccaagaaatctaactaaatgg 45565
>gb|AC105104.7| Homo sapiens chromosome 18, clone RP11-909J22, complete sequence Length = 131296 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 catgaccaagaaatctaacaaaatgg 134 ||||||||||||||||||| |||||| Sbjct: 79114 catgaccaagaaatctaactaaatgg 79139
>gb|AC134978.4| Homo sapiens chromosome 18, clone RP11-671C19, complete sequence Length = 177630 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 catgaccaagaaatctaacaaaatgg 134 ||||||||||||||||||| |||||| Sbjct: 132204 catgaccaagaaatctaactaaatgg 132229
>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence Length = 206456 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 gtagaaagcagctgcaggctcccag 200 |||||||||||||||||||| |||| Sbjct: 111036 gtagaaagcagctgcaggctgccag 111060
>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17, complete sequence Length = 202430 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 gtagaaagcagctgcaggctcccag 200 |||||||||||||||||||| |||| Sbjct: 43602 gtagaaagcagctgcaggctgccag 43626
>ref|NM_001017112.2| Xenopus tropicalis hypothetical protein LOC549866 (LOC549866), mRNA Length = 1171 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 caaagatgtagctggccttg 270 |||||||||||||||||||| Sbjct: 316 caaagatgtagctggccttg 335
>gb|DQ001169.1| Acacia mangium x Acacia auriculiformis caffeic acid O-methyltransferase mRNA, complete cds Length = 1408 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 ggcagtgcgtcgtagcagtt 467 |||||||||||||||||||| Sbjct: 934 ggcagtgcgtcgtagcagtt 915
>gb|AC124494.4| Mus musculus BAC clone RP23-464P12 from chromosome 13, complete sequence Length = 204177 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 ccatgaccaagaaatctaacaaaa 131 ||||||||||| |||||||||||| Sbjct: 127514 ccatgaccaaggaatctaacaaaa 127537
>gb|AC112157.4| Mus musculus BAC clone RP24-103F14 from chromosome 13, complete sequence Length = 155757 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 ccatgaccaagaaatctaacaaaa 131 ||||||||||| |||||||||||| Sbjct: 127201 ccatgaccaaggaatctaacaaaa 127178
>emb|CR846088.7| Zebrafish DNA sequence from clone DKEY-189L3 in linkage group 11, complete sequence Length = 162255 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 actggcaggatacattccac 425 |||||||||||||||||||| Sbjct: 19025 actggcaggatacattccac 19006
>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165052 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ccaagaaatctaacaaaatg 133 |||||||||||||||||||| Sbjct: 68979 ccaagaaatctaacaaaatg 68960
>gb|AF153826.1|AF153826 Festuca arundinacea comt3 caffeic acid O-methyltransferase mRNA, complete cds Length = 1430 Score = 40.1 bits (20), Expect = 6.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 432 caccttaccatgcgcgggcagtgcgtcgtagcagtt 467 |||||| || ||||| ||||| |||||||||||||| Sbjct: 947 caccttgccgtgcgctggcagcgcgtcgtagcagtt 912
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 gccgccggggctgtacgcca 349 |||||||||||||||||||| Sbjct: 5399480 gccgccggggctgtacgcca 5399499
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529B09 Length = 138188 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 gccgccggggctgtacgcca 349 |||||||||||||||||||| Sbjct: 30414 gccgccggggctgtacgcca 30433
>ref|XM_561189.1| Anopheles gambiae str. PEST ENSANGP00000027706 (ENSANGG00000025110), partial mRNA Length = 351 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ctgtacgccagcaagctggc 359 |||||||||||||||||||| Sbjct: 151 ctgtacgccagcaagctggc 170
>emb|CR761206.2| Xenopus tropicalis finished cDNA, clone TEgg006f18 Length = 1171 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 caaagatgtagctggccttg 270 |||||||||||||||||||| Sbjct: 316 caaagatgtagctggccttg 335
>gb|AE003443.2| Drosophila melanogaster chromosome X, section 27 of 74 of the complete sequence Length = 299153 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ccaagaaatctaacaaaatg 133 |||||||||||||||||||| Sbjct: 225861 ccaagaaatctaacaaaatg 225842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,796,474 Number of Sequences: 3902068 Number of extensions: 3796474 Number of successful extensions: 67680 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67625 Number of HSP's gapped (non-prelim): 53 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
