>REPE1_ECOLI (P03856) Replication initiation protein (Protein rep) (Protein E)|
           (Protein F4)
          Length = 251

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 387 LGHTNTITNSSGLRIYIPMMEYTSINNCSMPIIKIEWLVNRRQ 259
           L  T  ITN   +R+Y  + +Y   +   +  +KI+W++ R Q
Sbjct: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193

>REPE2_SALTI (P62539) Replication initiation protein (Protein rep) (Protein E)|
          Length = 251

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 387 LGHTNTITNSSGLRIYIPMMEYTSINNCSMPIIKIEWLVNRRQ 259
           L  T  ITN   +R+Y  + +Y   +   +  +KI+W++ R Q
Sbjct: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGVVSLKIDWIMERYQ 193

>REPE2_ECOLI (P62538) Replication initiation protein (Protein rep) (Protein E)|
          Length = 251

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 387 LGHTNTITNSSGLRIYIPMMEYTSINNCSMPIIKIEWLVNRRQ 259
           L  T  ITN   +R+Y  + +Y   +   +  +KI+W++ R Q
Sbjct: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGVVSLKIDWIMERYQ 193

>LPXB_VIBCH (Q9KPW5) Lipid-A-disaccharide synthase (EC 2.4.1.182)|
          Length = 379

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 78  SPYLTIPTCLLARDMSRSMQDAHFQA---YHELSTIILSDNREVVELCVRM 221
           +PY+++P  L   ++ + +   H      YHE+S ++ SDN+ +++    M
Sbjct: 307 TPYVSLPNILAGEELVKELLQDHCTVDNLYHEVSRLLESDNQALMDKFTEM 357

>TRUA_XYLFT (Q87DS1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 257

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 30  VQHLILKVQREMLTTTSPYLTIPTCLLARDMS--RSMQDAHFQAYHELSTIILSDNREVV 203
           +QH  L  +R  L   + ++     L   D S  RS Q     A  EL  I +  + EV+
Sbjct: 124 LQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVRRDAEVI 183

Query: 204 ELCVR 218
           E+CV+
Sbjct: 184 EICVQ 188

>ZN451_HUMAN (Q9Y4E5) Zinc finger protein 451 (Coactivator for steroid|
           receptors)
          Length = 1061

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 141 AHFQAYHELSTIILSDNREVVELCVRMEGELEIINTWNDSACGSR 275
           +H++ +H +  + +S   E  E  ++ E +  +I T N   CG R
Sbjct: 684 SHYEEHHSIDYVFVS---EKTETSIKTEDDFPVIETSNQLTCGCR 725


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,156,822
Number of Sequences: 219361
Number of extensions: 1289984
Number of successful extensions: 2754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2753
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)