ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit... 155 7e-38
2PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulator... 154 2e-37
3PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit... 123 3e-28
4PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit... 122 5e-28
5PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit... 121 9e-28
6RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7 95 9e-20
7PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit... 94 3e-19
8RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7 90 4e-18
9CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalos... 42 0.001
10CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosom... 41 0.002
11CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN comp... 39 0.008
12PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subuni... 39 0.010
13PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subuni... 38 0.013
14PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subuni... 38 0.013
15CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalo... 37 0.029
16CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55... 30 2.7
17TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE 30 3.5
18TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog 29 7.8
19UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase... 29 7.8

>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory particle non-ATPase subunit 7)
           (OsRPN7)
          Length = 389

 Score =  155 bits (391), Expect = 7e-38
 Identities = 79/83 (95%), Positives = 81/83 (97%)
 Frame = -2

Query: 491 FLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFY 312
           FLESYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPDARNAFY
Sbjct: 307 FLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFY 366

Query: 311 QSTIKQGDFLLNRIQKLSRVIDL 243
           Q+TIKQGDFLLNRIQKLSRVIDL
Sbjct: 367 QATIKQGDFLLNRIQKLSRVIDL 389



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>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6|
          Length = 387

 Score =  154 bits (388), Expect = 2e-37
 Identities = 77/83 (92%), Positives = 81/83 (97%)
 Frame = -2

Query: 491 FLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFY 312
           FLESYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDA+NA Y
Sbjct: 305 FLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALY 364

Query: 311 QSTIKQGDFLLNRIQKLSRVIDL 243
           Q+TIKQGDFLLNRIQKLSRVIDL
Sbjct: 365 QATIKQGDFLLNRIQKLSRVIDL 387



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>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A)
          Length = 389

 Score =  123 bits (308), Expect = 3e-28
 Identities = 60/82 (73%), Positives = 72/82 (87%)
 Frame = -2

Query: 488 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 309
           LESY+S+T+  MA AFGV VDFIDQELSRFIAAG+LHCKIDKV  ++ETNRPD++N  YQ
Sbjct: 308 LESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQ 367

Query: 308 STIKQGDFLLNRIQKLSRVIDL 243
            TIK+GD LLNR+QKLSRVI++
Sbjct: 368 ETIKKGDLLLNRVQKLSRVINM 389



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>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (Rpn7 protein)
          Length = 389

 Score =  122 bits (306), Expect = 5e-28
 Identities = 57/82 (69%), Positives = 74/82 (90%)
 Frame = -2

Query: 488 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 309
           LESY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N  YQ
Sbjct: 308 LESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQ 367

Query: 308 STIKQGDFLLNRIQKLSRVIDL 243
           +TIKQGD LLNRIQKLSRVI++
Sbjct: 368 ATIKQGDLLLNRIQKLSRVINI 389



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>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit S10) (p42A) (Proteasome
           regulatory particle subunit p44S10) (Phosphonoformate
           immuno-associated protein 4) (Breast cancer-associated
           protein SGA-113M)
          Length = 389

 Score =  121 bits (304), Expect = 9e-28
 Identities = 59/82 (71%), Positives = 72/82 (87%)
 Frame = -2

Query: 488 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 309
           LESY+S+T+  MA AFGV V+FIDQELSRFIAAG+LHCKIDKV  ++ETNRPD++N  YQ
Sbjct: 308 LESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQ 367

Query: 308 STIKQGDFLLNRIQKLSRVIDL 243
            TIK+GD LLNR+QKLSRVI++
Sbjct: 368 ETIKKGDLLLNRVQKLSRVINM 389



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>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7|
          Length = 409

 Score = 95.1 bits (235), Expect = 9e-20
 Identities = 45/87 (51%), Positives = 66/87 (75%)
 Frame = -2

Query: 488 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 309
           LESY+++++++MAA+FGV+VD+ID++L+ FI   KL+C ID+V GV+ TNRPD +N  YQ
Sbjct: 323 LESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQ 382

Query: 308 STIKQGDFLLNRIQKLSRVIDL*AFFV 228
             +KQGD LLN++QK    +   AF V
Sbjct: 383 EVVKQGDVLLNKLQKYQATVMRGAFKV 409



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>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S|
           proteasome regulatory subunit rpn-7)
          Length = 410

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = -2

Query: 491 FLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFY 312
           FL  YK+V ++ MA  FGV+  FID+EL R IA G+L C+ID V GV+E N  D++N  Y
Sbjct: 328 FLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLY 387

Query: 311 QSTIKQGDFLLNRIQKLSRVID 246
           ++ IK GD LLNRIQKL+RVI+
Sbjct: 388 KAVIKDGDILLNRIQKLARVIN 409



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>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7|
          Length = 429

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 41/82 (50%), Positives = 62/82 (75%)
 Frame = -2

Query: 488 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 309
           LESYK++++++MA+AFGV+V F+D +L +FI   +L+C ID+V G++ETNRPD +NA Y 
Sbjct: 342 LESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYH 401

Query: 308 STIKQGDFLLNRIQKLSRVIDL 243
             +KQGD LL ++QK    + L
Sbjct: 402 LLVKQGDGLLTKLQKYGAAVRL 423



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>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (GPS1 protein)
          Length = 471

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -2

Query: 491 FLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFY 312
           +   Y S  M  MAAAF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  +
Sbjct: 357 YFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTF 416

Query: 311 QSTIKQG 291
           + ++  G
Sbjct: 417 EKSLLMG 423



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>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)|
           (SGN1) (JAB1-containing signalosome subunit 1) (G
           protein pathway suppressor 1) (MFH protein)
          Length = 471

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = -2

Query: 491 FLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFY 312
           +   Y S  M  MAAAF  TV  ++ EL++ I  G ++ +ID  + +L     D R+  +
Sbjct: 357 YFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTF 416

Query: 311 QSTIKQG 291
           + ++  G
Sbjct: 417 EKSLLMG 423



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>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)|
           (Constitutive photomorphogenesis protein 11) (FUSCA
           protein 6) (FUSCA6)
          Length = 441

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -2

Query: 479 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 300
           + SV +  MA AF  +V  +++EL   I   ++  +ID    +L     D RNA +Q  +
Sbjct: 350 FVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVL 409

Query: 299 KQGD 288
           + G+
Sbjct: 410 QMGN 413



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>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = -2

Query: 479 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 300
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AGV+   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428

Query: 299 KQGDFLLNRIQKLSRVI 249
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445



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>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = -2

Query: 479 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 300
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428

Query: 299 KQGDFLLNRIQKLSRVI 249
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445



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>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S|
           proteasome regulatory subunit p55)
          Length = 455

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = -2

Query: 479 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 300
           Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP   N       
Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428

Query: 299 KQGDFLLNRIQKLSRVI 249
           ++ + L++ + K + +I
Sbjct: 429 QKLNSLMSLVNKTTHLI 445



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>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit|
           1b) (Dch1-2)
          Length = 525

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 491 FLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFY 312
           +   Y S  M  MA AF  +V  ++ E+ + I  G++  +ID    +L     D RN+ +
Sbjct: 406 YFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTF 465

Query: 311 QSTIKQG 291
           +  +  G
Sbjct: 466 ERALIMG 472



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>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)|
          Length = 261

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 374 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 249
           K  KVA V+  NRP A NA    T+K+ D+++  I+  S V+
Sbjct: 10  KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50



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>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE|
          Length = 454

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -2

Query: 431 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 291
           +DF D+E+  F++ GK+  K+D+V   LE  R  AR     S +++G
Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216



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>TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog|
          Length = 178

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 SAGSLPA*WSTGKRHSVHQVGSSPGHQQPY 367
           S G  P  +S     S HQ G SPG QQ Y
Sbjct: 81  SPGGYPGSYSRSPAGSQHQFGYSPGQQQTY 110



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>UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase precursor (EC|
           2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase)
           (UGT)
          Length = 1448

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +1

Query: 4   RGNNHLQTMVCNSLDPYS*VTSQI---LKFLKKN 96
           R + HLQ ++ +SLDP S V + +   LKFLKK+
Sbjct: 739 RSSKHLQEILNSSLDPSSGVVNDMDKALKFLKKS 772


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,710,226
Number of Sequences: 219361
Number of extensions: 1519676
Number of successful extensions: 3725
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3723
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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