ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38d12 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 81.3 bits (199), Expect = 1e-15 Identities = 42/82 (51%), Positives = 56/82 (68%), Gaps = 3/82 (3%) Frame = -1 Query: 469 QRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVAYKSGERQKLQDAGYVIVGNIGDQWS 296 ++A+T NL++ G W L+LK P + AV+YK+ R+KL GY IVG IGDQWS Sbjct: 172 KQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWS 231 Query: 295 DILGAPEG-ARTFKLPDPMYYI 233 D+LG G +RTFKLP+P+YYI Sbjct: 232 DLLGGHRGESRTFKLPNPLYYI 253
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 80.1 bits (196), Expect = 3e-15 Identities = 42/79 (53%), Positives = 53/79 (67%), Gaps = 2/79 (2%) Frame = -1 Query: 463 AITVTNLRRQGISGWMNLLLKQPGF-KGSAVAYKSGERQKLQDAGYVIVGNIGDQWSDIL 287 A+T NL++ G W L+LK P +A++YKS R+ L GY IVG IGDQWSD+L Sbjct: 175 AVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLL 234 Query: 286 GAPEG-ARTFKLPDPMYYI 233 G G +RTFKLP+PMYYI Sbjct: 235 GDHRGESRTFKLPNPMYYI 253
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 78.2 bits (191), Expect = 1e-14 Identities = 38/76 (50%), Positives = 51/76 (67%) Frame = -1 Query: 460 ITVTNLRRQGISGWMNLLLKQPGFKGSAVAYKSGERQKLQDAGYVIVGNIGDQWSDILGA 281 IT+ NL+ G++ W +L+LK G K + V YKS R L GY IVGNIGDQW+D++ Sbjct: 194 ITIENLKAVGVTKWKHLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVED 253 Query: 280 PEGARTFKLPDPMYYI 233 G R FKLP+P+YY+ Sbjct: 254 TPG-RVFKLPNPLYYV 268
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 77.4 bits (189), Expect = 2e-14 Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Frame = -1 Query: 466 RAITVTNLRRQGISGWMNLLLKQPGFKG-SAVAYKSGERQKLQDAGYVIVGNIGDQWSDI 290 R++TV NL G W L+L+ G +A YKS R + + G+ IVGN GDQWSD+ Sbjct: 176 RSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDL 235 Query: 289 LGAPEGARTFKLPDPMYYI 233 LG+ R+FKLP+PMYYI Sbjct: 236 LGSSMSYRSFKLPNPMYYI 254
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 73.9 bits (180), Expect = 2e-13 Identities = 36/76 (47%), Positives = 49/76 (64%) Frame = -1 Query: 460 ITVTNLRRQGISGWMNLLLKQPGFKGSAVAYKSGERQKLQDAGYVIVGNIGDQWSDILGA 281 +T+ NL G++ W +L+LK G V YKS R+ L GY IVGNIGDQW+D++ Sbjct: 189 VTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVED 248 Query: 280 PEGARTFKLPDPMYYI 233 G R FKLP+P+YY+ Sbjct: 249 TPG-RVFKLPNPLYYV 263
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 73.6 bits (179), Expect = 2e-13 Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 3/78 (3%) Frame = -1 Query: 469 QRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVAYKSGERQKLQDAGYVIVGNIGDQWS 296 ++A+T NL++ G W L+LK P + AV+YK+ R+KL GY IVG IGDQWS Sbjct: 169 KQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWS 228 Query: 295 DILGAPEG-ARTFKLPDP 245 D+LG G +RTFKLP+P Sbjct: 229 DLLGGHRGESRTFKLPNP 246
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 176 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 277 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 176 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 277 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 176 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 277 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.0 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 176 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 277 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 316 NIGDQWSDILGAPEGARTFKLPDPMY 239 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>YGFT_ECOLI (Q46820) Hypothetical protein ygfT| Length = 639 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +2 Query: 308 ADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRDPLAAEV---GDGD 460 AD+ +D PGV+Q LP L H R L GL + E +P D V G GD Sbjct: 411 ADLPHEDAPGVIQALPF--LTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGD 461
>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 200 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 334 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 200 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 334 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 200 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 334 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = -1 Query: 445 LRRQGISGWMNLLLKQPGFKGSAVAYKSGERQKLQDAG-YVIVGNIGDQWSDILGAPEGA 269 + RQG+ + L PG +G+ V GE + AG V+V N W + + P Sbjct: 94 MARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVP-SV 152 Query: 268 RTFKLPDPMYY 236 +TF +P+ M + Sbjct: 153 QTFLIPEAMTF 163
>PRS23_HUMAN (O95084) Serine protease 23 precursor (EC 3.4.21.-) (Putative| secreted protein ZSIG13) Length = 383 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -1 Query: 400 QPGFKGSAVAYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 236 QPG GS V + +RQ+ + +I G QW D+ G+P+ P+ Y Sbjct: 312 QPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKY 366
>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich| protein) (Nasopharyngeal carcinoma-associated proline-rich protein 4) Length = 134 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = -3 Query: 464 GHHRHQPPPP 435 GHHRH PPPP Sbjct: 78 GHHRHPPPPP 87
>IDI2_RICFE (Q4ULD7) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 345 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = +2 Query: 128 NWGLII*RNMHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLWRAEDVAPLV 307 NWG+ S++++RE++G +P A GGL + G + ++ Sbjct: 251 NWGI------PTLDSLKMVREVSGDIPIIASGGLKSGIDGAKAIRMGANIFGLAGQFLKA 304 Query: 308 ADVTDDDIPGVLQLL 352 AD ++ + +QL+ Sbjct: 305 ADTSESLLSEEVQLI 319
>RL16_LISMO (Q927L4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 155 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 280 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISMF (Q71WF3) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 155 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 280 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISIN (Q7ANU4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 155 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 280 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,955,875 Number of Sequences: 219361 Number of extensions: 1320009 Number of successful extensions: 4037 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4012 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
