>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)|
          Length = 392

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +3

Query: 270 PRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRP 395
           P  PS P    L   PL  HP L  H P PP   L  P H+P
Sbjct: 54  PAPPSPPAAPCLP--PLAHHPHLPPHPPPPPPQHLAAPAHQP 93

>YERA_BACSU (O34909) Putative adenine deaminase yerA (EC 3.5.4.2) (Adenase)|
           (Adenine aminase)
          Length = 580

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -3

Query: 283 DGHLGVVSSDRYVSC--LSHPLVPTPFRVSKKTRLLF*KGCHHCVYSLLLCHYSFVVPAS 110
           D +LGVV   R  S   L  PL P P  V  K  +L   GC    ++    H   +VP  
Sbjct: 327 DDYLGVVGPGRLASLNILEDPLNPNPVTVLSKGTILRENGCDLKAFTKTDWHKGGLVPL- 385

Query: 109 GQIDFYLSCDDV 74
            ++ + ++ DD+
Sbjct: 386 -ELSYDMTMDDL 396

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 165 WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 308
           WQ +  N +VFL    GV  +     +   +  T+P CPS+P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGVRNQSPAEAEKPAAS-TSPSCPSLPPHLPTR 60

>IGHE_HUMAN (P01854) Ig epsilon chain C region|
          Length = 428

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 102 ICPDAGTTKL*WHRSK-----EYTQ*WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDET 266
           + P  GT  L W R+        T+  +   N +L    TL  VGTR W   +TY+   T
Sbjct: 244 LAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP-VGTRDWIEGETYQCRVT 302

Query: 267 TPRCP 281
            P  P
Sbjct: 303 HPHLP 307

>TRFE_PAROL (O93429) Serotransferrin precursor|
          Length = 685

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 29  DKTLICSLQPNDSVRDIIT**IKINLSRRRHHKAVVAQKQRVHTMMATFLKQQSSLFGNS 208
           D  LIC  +   SV + ++     NL++   H  V   +  + T + TFL  Q S FGNS
Sbjct: 561 DYELICPSKGPVSVENFMS----CNLAKVNAHAVVT--RPEIRTKVVTFLNNQQSHFGNS 614

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +3

Query: 264 TTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS--SLIQPEHRPLA 401
           T PR P  P       RP+QG P      P PP     +  P H PL+
Sbjct: 518 TPPRPPGPPAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMSLPTHEPLS 565

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 165 WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 308
           WQ +  N +VFL    G+  +     D   +  T+P CP +P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGLKNQSPAEADK-PATSTSPSCPPLPPHLPTR 60

>GLGB_BORPE (Q7VYK0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 731

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 291 GHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 401
           GH VL+A PL    +       PPA++ I P+ RP A
Sbjct: 203 GHTVLKADPLARQAE------APPATASIVPDERPFA 233

>GLGB_BORPA (Q7W6L4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 731

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 291 GHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 401
           GH VL+A PL    +       PPA++ I P+ RP A
Sbjct: 203 GHTVLKADPLARQAE------APPATASIVPDERPFA 233

>GLGB_BORBR (Q7WII7) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 731

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 291 GHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLA 401
           GH VL+A PL    +       PPA++ I P+ RP A
Sbjct: 203 GHTVLKADPLARQAE------APPATASIVPDERPFA 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,976,893
Number of Sequences: 219361
Number of extensions: 1228018
Number of successful extensions: 3434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3434
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)