Clone Name | rbart38d08 |
---|---|
Clone Library Name | barley_pub |
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase Length = 740 Score = 214 bits (108), Expect = 5e-53 Identities = 126/132 (95%) Strand = Plus / Minus Query: 5 ccaggcaaactttacgatctctctcgcacacacaacggatggatatggtttgacctctca 64 |||| |||||||||||| |||||||||||||||||| |||| ||||| |||||||||||| Sbjct: 697 ccagtcaaactttacgacctctctcgcacacacaacagatgcatatgttttgacctctca 638 Query: 65 tcttattggctaaacatcacacttccacgattcaaagtttaaaacacatagactacttaa 124 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 tcttattggctagacatcacacttccacgattcaaagtttaaaacacatagactacttaa 578 Query: 125 cggccactcaca 136 |||||||||||| Sbjct: 577 cggccactcaca 566
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 155 bits (78), Expect = 4e-35 Identities = 81/82 (98%) Strand = Plus / Minus Query: 55 tgacctctcatcttattggctaaacatcacacttccacgattcaaagtttaaaacacata 114 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186 Query: 115 gactacttaacggccactcaca 136 |||||||||||||||||||||| Sbjct: 1185 gactacttaacggccactcaca 1164
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gtttgacctctcatcttatt 71 |||||||||||||||||||| Sbjct: 129021 gtttgacctctcatcttatt 129040
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gtttgacctctcatcttatt 71 |||||||||||||||||||| Sbjct: 14770 gtttgacctctcatcttatt 14789
>emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in linkage group 22, complete sequence Length = 220546 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 caaactttacgatctctctcgcac 33 |||||||||||||||||| ||||| Sbjct: 163832 caaactttacgatctctcacgcac 163855
>emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22, complete sequence Length = 185892 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 caaactttacgatctctctcgcac 33 |||||||||||||||||| ||||| Sbjct: 105158 caaactttacgatctctcacgcac 105181
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gtttgacctctcatcttatt 71 |||||||||||||||||||| Sbjct: 11484767 gtttgacctctcatcttatt 11484748
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gtttgacctctcatcttatt 71 |||||||||||||||||||| Sbjct: 11563956 gtttgacctctcatcttatt 11563937
>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence Length = 179396 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 tctctctcgcacacacaac 40 ||||||||||||||||||| Sbjct: 81322 tctctctcgcacacacaac 81304
>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence Length = 210819 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 aaagtttaaaacacataga 116 ||||||||||||||||||| Sbjct: 92308 aaagtttaaaacacataga 92290
>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete sequence Length = 154367 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 cttccacgattcaaagttt 104 ||||||||||||||||||| Sbjct: 91284 cttccacgattcaaagttt 91302
>emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, complete sequence Length = 29820 Score = 38.2 bits (19), Expect = 6.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 96 tcaaagtttaaaacacatagactactt 122 |||| ||||||| |||||||||||||| Sbjct: 25642 tcaaggtttaaatcacatagactactt 25616
>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence Length = 191191 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 atctctctcgcacacacaa 39 ||||||||||||||||||| Sbjct: 175696 atctctctcgcacacacaa 175678
>emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chromosome 13q22.1-31.1 Contains part of the LMO7 gene for LIM domain only 7 (KIAA0858) and a novel pseudogene (FLJ13188, FLJ22977), complete sequence Length = 139252 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 ttcaaagtttaaaacacat 113 ||||||||||||||||||| Sbjct: 22785 ttcaaagtttaaaacacat 22767
>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5 Length = 297750 Score = 38.2 bits (19), Expect = 6.4 Identities = 29/31 (93%), Gaps = 1/31 (3%) Strand = Plus / Plus Query: 48 tatggtttgacctctcatcttattggctaaa 78 ||||||||||||| |||||| |||||||||| Sbjct: 272807 tatggtttgacct-tcatctgattggctaaa 272836
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 tttgacctctcatcttatt 71 ||||||||||||||||||| Sbjct: 1221 tttgacctctcatcttatt 1203
>gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, complete sequence Length = 146952 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 attcaaagtttaaaacacataga 116 ||||||| ||||||||||||||| Sbjct: 11516 attcaaaatttaaaacacataga 11538
>gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, complete sequence Length = 166985 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 attcaaagtttaaaacacataga 116 ||||||| ||||||||||||||| Sbjct: 112216 attcaaaatttaaaacacataga 112238
>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence Length = 168190 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tcttattggctaaacatca 83 ||||||||||||||||||| Sbjct: 91623 tcttattggctaaacatca 91641
>gb|AY368681.1| Prochilodus marggravii clone Pmar03 microsatellite sequence Length = 350 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gatctctctcgcacacaca 38 ||||||||||||||||||| Sbjct: 92 gatctctctcgcacacaca 74
>emb|CR749743.13| Zebrafish DNA sequence from clone DKEY-97M3 in linkage group 4, complete sequence Length = 177044 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gatctctctcgcacacaca 38 ||||||||||||||||||| Sbjct: 26923 gatctctctcgcacacaca 26905
>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete sequence Length = 304712 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 tctctctcgcacacacaac 40 ||||||||||||||||||| Sbjct: 232255 tctctctcgcacacacaac 232237
>emb|AL929082.7| Zebrafish DNA sequence from clone CH211-113P18, complete sequence Length = 195316 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 tacgatctctctcgcacacacaa 39 |||||||||||||| |||||||| Sbjct: 35465 tacgatctctctcgtacacacaa 35443 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,021,884 Number of Sequences: 3902068 Number of extensions: 1021884 Number of successful extensions: 71341 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71261 Number of HSP's gapped (non-prelim): 82 length of query: 136 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 115 effective length of database: 17,151,101,840 effective search space: 1972376711600 effective search space used: 1972376711600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)