ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 214 5e-53
2emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 155 4e-35
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.6
4gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 40 1.6
5emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in... 40 1.6
6emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in... 40 1.6
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.6
9gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete... 38 6.4
10gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, co... 38 6.4
11emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chr... 38 6.4
12emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, comple... 38 6.4
13gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete... 38 6.4
14emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chrom... 38 6.4
15emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; ... 38 6.4
16emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 38 6.4
17gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, comp... 38 6.4
18gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, com... 38 6.4
19gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, comple... 38 6.4
20gb|AY368681.1| Prochilodus marggravii clone Pmar03 microsatellit... 38 6.4
21emb|CR749743.13| Zebrafish DNA sequence from clone DKEY-97M3 in ... 38 6.4
22gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 ... 38 6.4
23emb|AL929082.7| Zebrafish DNA sequence from clone CH211-113P18, ... 38 6.4

>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  214 bits (108), Expect = 5e-53
 Identities = 126/132 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   ccaggcaaactttacgatctctctcgcacacacaacggatggatatggtttgacctctca 64
           |||| |||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||
Sbjct: 697 ccagtcaaactttacgacctctctcgcacacacaacagatgcatatgttttgacctctca 638

                                                                       
Query: 65  tcttattggctaaacatcacacttccacgattcaaagtttaaaacacatagactacttaa 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcttattggctagacatcacacttccacgattcaaagtttaaaacacatagactacttaa 578

                       
Query: 125 cggccactcaca 136
           ||||||||||||
Sbjct: 577 cggccactcaca 566



to top

>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  155 bits (78), Expect = 4e-35
 Identities = 81/82 (98%)
 Strand = Plus / Minus

                                                                        
Query: 55   tgacctctcatcttattggctaaacatcacacttccacgattcaaagtttaaaacacata 114
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                  
Query: 115  gactacttaacggccactcaca 136
            ||||||||||||||||||||||
Sbjct: 1185 gactacttaacggccactcaca 1164



to top

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     gtttgacctctcatcttatt 71
              ||||||||||||||||||||
Sbjct: 129021 gtttgacctctcatcttatt 129040



to top

>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    gtttgacctctcatcttatt 71
             ||||||||||||||||||||
Sbjct: 14770 gtttgacctctcatcttatt 14789



to top

>emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in linkage group 22,
              complete sequence
          Length = 220546

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     caaactttacgatctctctcgcac 33
              |||||||||||||||||| |||||
Sbjct: 163832 caaactttacgatctctcacgcac 163855



to top

>emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22,
              complete sequence
          Length = 185892

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     caaactttacgatctctctcgcac 33
              |||||||||||||||||| |||||
Sbjct: 105158 caaactttacgatctctcacgcac 105181



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 52       gtttgacctctcatcttatt 71
                ||||||||||||||||||||
Sbjct: 11484767 gtttgacctctcatcttatt 11484748



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 52       gtttgacctctcatcttatt 71
                ||||||||||||||||||||
Sbjct: 11563956 gtttgacctctcatcttatt 11563937



to top

>gb|AC022351.3| Drosophila melanogaster clone BACR29G15, complete sequence
          Length = 179396

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    tctctctcgcacacacaac 40
             |||||||||||||||||||
Sbjct: 81322 tctctctcgcacacacaac 81304



to top

>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence
          Length = 210819

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    aaagtttaaaacacataga 116
             |||||||||||||||||||
Sbjct: 92308 aaagtttaaaacacataga 92290



to top

>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete
             sequence
          Length = 154367

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    cttccacgattcaaagttt 104
             |||||||||||||||||||
Sbjct: 91284 cttccacgattcaaagttt 91302



to top

>emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, complete sequence
          Length = 29820

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 96    tcaaagtttaaaacacatagactactt 122
             |||| ||||||| ||||||||||||||
Sbjct: 25642 tcaaggtttaaatcacatagactactt 25616



to top

>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     atctctctcgcacacacaa 39
              |||||||||||||||||||
Sbjct: 175696 atctctctcgcacacacaa 175678



to top

>emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chromosome 13q22.1-31.1
             Contains part of the LMO7 gene for LIM domain only 7
             (KIAA0858) and a novel pseudogene (FLJ13188, FLJ22977),
             complete sequence
          Length = 139252

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 95    ttcaaagtttaaaacacat 113
             |||||||||||||||||||
Sbjct: 22785 ttcaaagtttaaaacacat 22767



to top

>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5
          Length = 297750

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 29/31 (93%), Gaps = 1/31 (3%)
 Strand = Plus / Plus

                                             
Query: 48     tatggtttgacctctcatcttattggctaaa 78
              ||||||||||||| |||||| ||||||||||
Sbjct: 272807 tatggtttgacct-tcatctgattggctaaa 272836



to top

>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 53   tttgacctctcatcttatt 71
            |||||||||||||||||||
Sbjct: 1221 tttgacctctcatcttatt 1203



to top

>gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, complete sequence
          Length = 146952

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 94    attcaaagtttaaaacacataga 116
             ||||||| |||||||||||||||
Sbjct: 11516 attcaaaatttaaaacacataga 11538



to top

>gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, complete sequence
          Length = 166985

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 94     attcaaagtttaaaacacataga 116
              ||||||| |||||||||||||||
Sbjct: 112216 attcaaaatttaaaacacataga 112238



to top

>gb|AC093841.3| Homo sapiens BAC clone RP11-438F11 from 4, complete sequence
          Length = 168190

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    tcttattggctaaacatca 83
             |||||||||||||||||||
Sbjct: 91623 tcttattggctaaacatca 91641



to top

>gb|AY368681.1| Prochilodus marggravii clone Pmar03 microsatellite sequence
          Length = 350

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 20 gatctctctcgcacacaca 38
          |||||||||||||||||||
Sbjct: 92 gatctctctcgcacacaca 74



to top

>emb|CR749743.13| Zebrafish DNA sequence from clone DKEY-97M3 in linkage group 4,
             complete sequence
          Length = 177044

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    gatctctctcgcacacaca 38
             |||||||||||||||||||
Sbjct: 26923 gatctctctcgcacacaca 26905



to top

>gb|AE003502.4| Drosophila melanogaster chromosome X, section 54 of 74 of the complete
              sequence
          Length = 304712

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     tctctctcgcacacacaac 40
              |||||||||||||||||||
Sbjct: 232255 tctctctcgcacacacaac 232237



to top

>emb|AL929082.7| Zebrafish DNA sequence from clone CH211-113P18, complete sequence
          Length = 195316

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 17    tacgatctctctcgcacacacaa 39
             |||||||||||||| ||||||||
Sbjct: 35465 tacgatctctctcgtacacacaa 35443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,021,884
Number of Sequences: 3902068
Number of extensions: 1021884
Number of successful extensions: 71341
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71261
Number of HSP's gapped (non-prelim): 82
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top