ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38d06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 121 bits (61), Expect = 2e-24 Identities = 121/141 (85%) Strand = Plus / Minus Query: 241 cacgaaggggaggctccgcagcataagcgtgcgcatccggcgggggaacggcgcgctgtt 300 |||||||||||||||||||||||| || ||||||||||| ||||| |||||| ||| Sbjct: 53679 cacgaaggggaggctccgcagcatgaggaaccgcatccggcgagggaagggcgcgtcgtt 53620 Query: 301 gagcagctgctccagcacctccgccaccagcatcgtgtagtcctccagcagctccgccac 360 || |||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| Sbjct: 53619 gaacagctgctccagcacccgggccaccagcaccgtgtactcctcgagcagctccgccac 53560 Query: 361 tatccccaccaggaacatcgc 381 || ||||||||| |||||| Sbjct: 53559 tacggccaccaggatcatcgc 53539
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 121 bits (61), Expect = 2e-24 Identities = 121/141 (85%) Strand = Plus / Minus Query: 241 cacgaaggggaggctccgcagcataagcgtgcgcatccggcgggggaacggcgcgctgtt 300 |||||||||||||||||||||||| || ||||||||||| ||||| |||||| ||| Sbjct: 29380663 cacgaaggggaggctccgcagcatgaggaaccgcatccggcgagggaagggcgcgtcgtt 29380604 Query: 301 gagcagctgctccagcacctccgccaccagcatcgtgtagtcctccagcagctccgccac 360 || |||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| Sbjct: 29380603 gaacagctgctccagcacccgggccaccagcaccgtgtactcctcgagcagctccgccac 29380544 Query: 361 tatccccaccaggaacatcgc 381 || ||||||||| |||||| Sbjct: 29380543 tacggccaccaggatcatcgc 29380523 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 394 gctcgccttcgcctcgcggtgcgg 417 ||||||||||||| |||||||||| Sbjct: 18403393 gctcgccttcgccgcgcggtgcgg 18403370
>dbj|AK063676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E01, full insert sequence Length = 665 Score = 121 bits (61), Expect = 2e-24 Identities = 121/141 (85%) Strand = Plus / Minus Query: 241 cacgaaggggaggctccgcagcataagcgtgcgcatccggcgggggaacggcgcgctgtt 300 |||||||||||||||||||||||| || ||||||||||| ||||| |||||| ||| Sbjct: 220 cacgaaggggaggctccgcagcatgaggaaccgcatccggcgagggaagggcgcgtcgtt 161 Query: 301 gagcagctgctccagcacctccgccaccagcatcgtgtagtcctccagcagctccgccac 360 || |||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| Sbjct: 160 gaacagctgctccagcacccgggccaccagcaccgtgtactcctcgagcagctccgccac 101 Query: 361 tatccccaccaggaacatcgc 381 || ||||||||| |||||| Sbjct: 100 tacggccaccaggatcatcgc 80
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 334 cgtgtagtcctccagcagctccgccactatccccaccaggaacatc 379 |||||| |||||||||||||||||||| ||| ||||||||| |||| Sbjct: 16695546 cgtgtactcctccagcagctccgccacgatcgccaccaggatcatc 16695501
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1115_C05 Length = 146585 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 334 cgtgtagtcctccagcagctccgccactatccccaccaggaacatc 379 |||||| |||||||||||||||||||| ||| ||||||||| |||| Sbjct: 35458 cgtgtactcctccagcagctccgccacgatcgccaccaggatcatc 35413
>dbj|AK100843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123G06, full insert sequence Length = 700 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 334 cgtgtagtcctccagcagctccgccactatccccaccaggaacatc 379 |||||| |||||||||||||||||||| ||| ||||||||| |||| Sbjct: 186 cgtgtactcctccagcagctccgccacgatcgccaccaggatcatc 141
>dbj|AK071662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O11, full insert sequence Length = 715 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 334 cgtgtagtcctccagcagctccgccactatccccaccaggaacatc 379 |||||| |||||||||||||||||||| ||| ||||||||| |||| Sbjct: 185 cgtgtactcctccagcagctccgccacgatcgccaccaggatcatc 140
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056, complete sequence Length = 102883 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 gctgttgagcagctgctccagc 316 |||||||||||||||||||||| Sbjct: 95932 gctgttgagcagctgctccagc 95911
>ref|NM_188306.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 528 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 tgtggatgtggtgttgacttg 492 ||||||||||||||||||||| Sbjct: 73 tgtggatgtggtgttgacttg 53
>gb|AC151955.2| Populus trichocarpa clone Pop1-041G20, complete sequence Length = 129953 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 336 tgtagtcctccagcagctccgccactatccccaccag 372 |||| ||||||| ||||||||||||||| ||||||| Sbjct: 21114 tgtactcctccatcagctccgccactattgccaccag 21078
>gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete sequence Length = 146635 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 336 tgtagtcctccagcagctccgccactatccccaccag 372 |||| ||||||| ||||||||||||||| ||||||| Sbjct: 13874 tgtactcctccatcagctccgccactattgccaccag 13910
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 tgtggatgtggtgttgacttg 492 ||||||||||||||||||||| Sbjct: 5599544 tgtggatgtggtgttgacttg 5599524
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 tgtggatgtggtgttgacttg 492 ||||||||||||||||||||| Sbjct: 65017 tgtggatgtggtgttgacttg 64997
>dbj|AK110382.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-D03, full insert sequence Length = 3039 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 ctgagcagaggcgggcggctg 174 ||||||||||||||||||||| Sbjct: 2842 ctgagcagaggcgggcggctg 2822
>gb|BC040723.2| Homo sapiens hypothetical protein FLJ36748, mRNA (cDNA clone IMAGE:6065491), complete cds Length = 1314 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gagcagctgctccagcacct 320 |||||||||||||||||||| Sbjct: 131 gagcagctgctccagcacct 112
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gtcctccagcagctccgcca 359 |||||||||||||||||||| Sbjct: 1373685 gtcctccagcagctccgcca 1373666
>ref|XM_512238.1| PREDICTED: Pan troglodytes similar to adenomatosis polyposis coli 2; adenomatous polyposis coli like (LOC455551), mRNA Length = 4370 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 1827 cagctgctccagcacctccg 1808
>ref|XM_472197.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 gctcgccttcgcctcgcggtgcgg 417 ||||||||||||| |||||||||| Sbjct: 1107 gctcgccttcgccgcgcggtgcgg 1130
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 gttgagcagctgctccagcacctc 321 ||||||||||||||||| |||||| Sbjct: 1714644 gttgagcagctgctccatcacctc 1714667
>ref|XM_423371.1| PREDICTED: Gallus gallus similar to adenomatosis polyposis coli 2 (LOC425636), partial mRNA Length = 347 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 295 cagctgctccagcacctccg 276
>ref|XM_423292.1| PREDICTED: Gallus gallus similar to lymphoid-restricted membrane protein (LOC425540), partial mRNA Length = 426 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gcagctgctccagcacctcc 322 |||||||||||||||||||| Sbjct: 196 gcagctgctccagcacctcc 177
>ref|XM_421464.1| PREDICTED: Gallus gallus similar to cyclin-dependent kinase-like 1 (CDC2-related kinase) (LOC423575), mRNA Length = 1922 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tgagcagctgctccagcacc 319 |||||||||||||||||||| Sbjct: 834 tgagcagctgctccagcacc 853
>gb|AC090443.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-434H17, complete sequence Length = 161421 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 tggacggaaaaaagaggcaaaatg 124 ||||||||||||||||| |||||| Sbjct: 147519 tggacggaaaaaagaggtaaaatg 147496
>ref|NM_005883.2| Homo sapiens adenomatosis polyposis coli 2 (APC2), mRNA Length = 10151 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 436 cagctgctccagcacctccg 417
>gb|BC032573.1| Homo sapiens adenomatosis polyposis coli 2, mRNA (cDNA clone IMAGE:5247221), containing frame-shift errors Length = 2316 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 436 cagctgctccagcacctccg 417
>gb|BC020381.1| Homo sapiens adenomatosis polyposis coli 2, mRNA (cDNA clone IMAGE:4154147) Length = 2897 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 290 cagctgctccagcacctccg 271
>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24 Length = 307050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gtcggtctgcacaccaaacg 89 |||||||||||||||||||| Sbjct: 218787 gtcggtctgcacaccaaacg 218806
>emb|AJ012652.1|HSA012652 Homo sapiens mRNA for APC2 protein, partial Length = 2403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 432 cagctgctccagcacctccg 413
>emb|CR856017.2| Human DNA sequence from clone WI2-85805H8 on chromosome X, complete sequence Length = 39781 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gctgctccagcacctccgcc 325 |||||||||||||||||||| Sbjct: 32422 gctgctccagcacctccgcc 32403
>gb|AC027307.5| Homo sapiens chromosome 19 clone CTB-25B13, complete sequence Length = 153570 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 43156 cagctgctccagcacctccg 43137
>dbj|AK095980.1| Homo sapiens cDNA FLJ38661 fis, clone HLUNG2001633, weakly similar to Homo sapiens actin filament associated protein (AFAP) mRNA Length = 1958 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gagcagctgctccagcacct 320 |||||||||||||||||||| Sbjct: 118 gagcagctgctccagcacct 99
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cttcgcctcgcggtgcggta 419 |||||||||||||||||||| Sbjct: 4127412 cttcgcctcgcggtgcggta 4127393
>ref|NM_152406.1| Homo sapiens hypothetical protein FLJ36748 (FLJ36748), mRNA Length = 4153 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gagcagctgctccagcacct 320 |||||||||||||||||||| Sbjct: 107 gagcagctgctccagcacct 88
>gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43A-43B, BAC clone BACR12F04, complete sequence Length = 197994 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 ctttggatgtggatgtggtgttga 488 |||||||||||||||||| ||||| Sbjct: 58233 ctttggatgtggatgtggagttga 58256
>emb|CR407085.1| Gallus gallus finished cDNA, clone ChEST738b11 Length = 836 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gcagctgctccagcacctcc 322 |||||||||||||||||||| Sbjct: 273 gcagctgctccagcacctcc 254
>gb|AC074270.25|AC074270 Homo sapiens 12 BAC RP11-84G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 140597 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 ggatgtggatgtggtgttga 488 |||||||||||||||||||| Sbjct: 16012 ggatgtggatgtggtgttga 15993
>dbj|AB022529.2| Homo sapiens APCL gene, complete cds Length = 17008 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 1009 cagctgctccagcacctccg 990
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 acgaggctgagcagaggcgggcgg 171 ||||||| |||||||||||||||| Sbjct: 129056 acgaggcggagcagaggcgggcgg 129079
>gb|AC084123.9| Homo sapiens chromosome 8, clone CTD-2267H22, complete sequence Length = 120725 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 ctgctccagcacctccgccaccag 330 |||| ||||||||||||||||||| Sbjct: 64184 ctgcgccagcacctccgccaccag 64161
>gb|AC103705.5| Homo sapiens chromosome 8, clone RP11-55J15, complete sequence Length = 194189 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 ctgctccagcacctccgccaccag 330 |||| ||||||||||||||||||| Sbjct: 2184 ctgcgccagcacctccgccaccag 2161
>gb|AF128222.1|AF128222 Homo sapiens adenomatous polyposis coli homolog APC2 (APC2) mRNA, partial cds Length = 2403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 432 cagctgctccagcacctccg 413
>gb|AF110335.1|HSAPC2P1 Homo sapiens APC2 protein (APC2) gene, exons 1, 2, and 3 and partial cds Length = 360 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 235 cagctgctccagcacctccg 216
>gb|AF110334.1|AF110334 Homo sapiens APC2 protein (APC2) mRNA, alternatively spliced, partial cds Length = 3800 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 291 cagctgctccagcacctccg 272
>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete sequence Length = 231065 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ctttggatgtggatgtggtgttga 488 |||||||||||||||||| ||||| Sbjct: 171843 ctttggatgtggatgtggagttga 171820
>gb|AC005198.1|AC005198 Drosophila melanogaster DNA sequence (P1 DS08462 (D163)), complete sequence Length = 81909 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 ctttggatgtggatgtggtgttga 488 |||||||||||||||||| ||||| Sbjct: 49093 ctttggatgtggatgtggagttga 49116
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 394 gctcgccttcgcctcgcggtgcgg 417 ||||||||||||| |||||||||| Sbjct: 105316 gctcgccttcgccgcgcggtgcgg 105293
>emb|AL078616.1|HST000001 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 179130 Length = 1359 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 297 cagctgctccagcacctccg 278
>dbj|AB012162.1| Homo sapiens mRNA for APCL protein, complete cds Length = 11649 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cagctgctccagcacctccg 323 |||||||||||||||||||| Sbjct: 1941 cagctgctccagcacctccg 1922
>dbj|AK074185.1| Homo sapiens mRNA for FLJ00258 protein Length = 4153 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gagcagctgctccagcacct 320 |||||||||||||||||||| Sbjct: 107 gagcagctgctccagcacct 88 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,272,313 Number of Sequences: 3902068 Number of extensions: 3272313 Number of successful extensions: 73640 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73242 Number of HSP's gapped (non-prelim): 395 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
