>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 1) (OsGME-1)
          Length = 378

 Score =  129 bits (323), Expect = 4e-30
 Identities = 62/68 (91%), Positives = 65/68 (95%)
 Frame = -2

Query: 449 NTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERPEGKDVARYGSSKVVSTQAPVQLGS 270
           NTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKE+ +G D+A YGSSKVVSTQAPVQLGS
Sbjct: 311 NTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGS 370

Query: 269 LRAADGKE 246
           LRAADGKE
Sbjct: 371 LRAADGKE 378

>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 2)
          Length = 371

 Score =  122 bits (307), Expect = 3e-28
 Identities = 58/68 (85%), Positives = 63/68 (92%)
 Frame = -2

Query: 449 NTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERPEGKDVARYGSSKVVSTQAPVQLGS 270
           NTLIKEKLGWAPTM+LKDGLR TYFWIKEQ+EKE+ EG D++ YGSSKVV TQAPVQLGS
Sbjct: 304 NTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGS 363

Query: 269 LRAADGKE 246
           LRAADGKE
Sbjct: 364 LRAADGKE 371

>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase)
          Length = 377

 Score =  118 bits (295), Expect = 8e-27
 Identities = 56/68 (82%), Positives = 61/68 (89%)
 Frame = -2

Query: 449 NTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERPEGKDVARYGSSKVVSTQAPVQLGS 270
           N LIKEKLGWAP M+LK+GLR TYFWIKEQIEKE+ +G DV+ YGSSKVV TQAPVQLGS
Sbjct: 310 NNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGS 369

Query: 269 LRAADGKE 246
           LRAADGKE
Sbjct: 370 LRAADGKE 377

>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2) (AtGER2)
          Length = 328

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 428 LGWAPTMKLKDGLRFTYFWIKEQIEKER 345
           LGW P + LKDGL  TY W  E + +++
Sbjct: 300 LGWTPKISLKDGLSQTYEWYLENVVQKK 327

>GFRA3_MOUSE (O35118) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 397

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = -2

Query: 203 PNCPPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSSCQQNSS 51
           PNC  + SF          C A P+C S       HCHP  +L +C    S
Sbjct: 243 PNCLDLRSF----------CRADPLCRSRLMDFQTHCHPMDILGTCATEQS 283

>GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 400

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 203 PNC--PPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSSCQQNSS 51
           PNC  PP+       LE    C + P+C S       HCHP  +L +C    S
Sbjct: 237 PNCALPPVAP---NCLELRRLCFSDPLCRSRLVDFQTHCHPMDILGTCATEQS 286

>RY44_DROME (Q24498) Ryanodine receptor 44F|
          Length = 5127

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 204  QWHNRPGVDMHSCLLLAVSRAEGAQLHRCLCGHHL 308
            Q   R G D H   LL +  AEGA+L  C   HHL
Sbjct: 1974 QAFEREGKDEHRKGLLTMKMAEGAKLQMCYLLHHL 2008

>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1)
          Length = 328

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 434 EKLGWAPTMKLKDGLRFTYFWIKEQI 357
           +++GW P + LK+GL  TY W  E +
Sbjct: 298 QEMGWKPKVPLKEGLVETYKWYVENV 323

>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1) (AtGER1) (AtFX)
          Length = 312

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 428 LGWAPTMKLKDGLRFTYFWIKEQI 357
           LGW P + L+DGL  TY W  + +
Sbjct: 286 LGWTPKVSLRDGLSQTYDWYLKNV 309

>ALCR_EMENI (P21228) Regulatory protein alcR|
          Length = 821

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 181 PSLRKHLRIAQPALPTPCVIQQILVLLFIVTPIN--YYHRVNRI 56
           P    H +I+QPA   PC  +Q    L   TP+    Y RV ++
Sbjct: 566 PDHESHTQISQPAARWPCTYEQAAAALSSATPVKVLLYRRVTQL 609

>PANC_NEIMA (P57035) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 278

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 380 YFWIKEQIEKERPEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 246
           Y W+ + +E  R +  +VAR G  K+V   A  +LG+ R  D  E
Sbjct: 231 YGWVVDYVEIRRVDTLEVARAGDKKLV-VLAAARLGTTRLIDNLE 274

>EMR1_MOUSE (Q61549) EGF-like module-containing mucin-like hormone|
           receptor-like 1 precursor (Cell surface glycoprotein
           EMR1) (EMR1 hormone receptor) (Cell surface glycoprotein
           F4/80)
          Length = 931

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 126 THGVGRAGCAILKCFRNEGSDRWAIGQWHNRPGVDMHSCLLLAV 257
           T+ +GRA C+ L+ F +     W +G   N    D+  CL + +
Sbjct: 99  TNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDECLTIGI 142

>YQAK_BACSU (P45908) Hypothetical protein yqaK|
          Length = 284

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 428 LGWAPTMKLKDGLRFTYFWIKEQIEKER 345
           +G+A   +L +G R T +W K Q+EK +
Sbjct: 158 IGYAAYFELINGFRKTVYWTKAQVEKHK 185

>PANC_NEIMB (P57036) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 278

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 446 TLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKERPEGKDVARYGSSKVVSTQAPVQLGSL 267
           +L++  L +A   K        Y W+ + +E  R +  +VAR G  K+V   A   LG+ 
Sbjct: 209 SLVQGSLDYAGLEKRAVQSLTEYGWVVDYVEIRRADTLEVARAGDKKLV-VLAAACLGTT 267

Query: 266 RAADGKE 246
           R  D  E
Sbjct: 268 RLIDNLE 274

>MBHS_RHOCA (P15283) Uptake hydrogenase small subunit precursor (EC 1.12.99.6)|
           (Hydrogenlyase) (Membrane-bound hydrogenase small
           subunit)
          Length = 358

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 326 ARYGSSKVVSTQAPVQLGSLRAA--DGKE*TTMH--INPRPIMPLPNCPPI 186
           A  G+  ++S  A    G ++AA  +  + T +H  I  +PI+ +P CPPI
Sbjct: 147 AAEGAKAIISWGACASYGCVQAAAPNPTQATPVHKVITDKPIIKVPGCPPI 197

>GALE_METJA (Q57664) Putative UDP-glucose 4-epimerase (EC 5.1.3.2)|
           (Galactowaldenase) (UDP-galactose 4-epimerase)
          Length = 305

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 434 EKLGWAPTMKLKDGLRFTYFWIK 366
           E LGW P + LK+G++    W+K
Sbjct: 278 ESLGWKPEIDLKEGIKRVVNWMK 300

>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor|
          Length = 2437

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 289 HRCSWAPSARLTARSKQLCISTPG-LLCHCPIAHRSDPSLRKHLRIAQPALPTPC 128
           + C+ +PS     R+   CI+  G  LC CP  + + P  +   R+ QP LP+PC
Sbjct: 179 NECAVSPSP---CRNGGTCINEVGSYLCRCPPEY-TGPHCQ---RLYQPCLPSPC 226

>ARLY_PROMA (Q7VEK0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 419 APTMKLKDGLRFTYFWIKEQIEKERPEGKDVARYGSSKVVSTQAPVQL 276
           A T+ L++GL F+   +KE +E +     DVA Y  SK +  +   Q+
Sbjct: 341 AMTILLEEGLEFSLERLKETVEADFSNATDVADYLVSKNIPFREAYQI 388


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,401,472
Number of Sequences: 219361
Number of extensions: 1163914
Number of successful extensions: 3816
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3812
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)