ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474131.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
2dbj|AK098910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
3dbj|AK071913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
4dbj|AK061729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
5dbj|D90406.1|RICOZA Oryza sativa (japonica cultivar-group) mRNA ... 74 4e-10
6gb|DQ430402.1| Sorghum propinquum locus pSHR0111.4 genomic sequence 70 7e-09
7gb|DQ430401.1| Sorghum bicolor voucher PI585454 locus pSHR0111.4... 70 7e-09
8gb|DQ430400.1| Sorghum bicolor voucher PI267539 locus pSHR0111.4... 70 7e-09
9gb|DQ430399.1| Sorghum bicolor voucher PI267408 locus pSHR0111.4... 70 7e-09
10gb|DQ430398.1| Sorghum bicolor voucher PI221607 locus pSHR0111.4... 70 7e-09
11gb|DQ430397.1| Sorghum bicolor voucher PI152702 locus pSHR0111.4... 70 7e-09
12gb|DQ430396.1| Sorghum bicolor voucher NSL92371 locus pSHR0111.4... 70 7e-09
13gb|DQ430395.1| Sorghum bicolor voucher NSL87902b locus pSHR0111.... 70 7e-09
14gb|DQ430394.1| Sorghum bicolor voucher NSL87902a locus pSHR0111.... 70 7e-09
15gb|DQ430393.1| Sorghum bicolor voucher NSL87666b locus pSHR0111.... 70 7e-09
16gb|DQ430392.1| Sorghum bicolor voucher NSL87666a locus pSHR0111.... 70 7e-09
17gb|DQ430391.1| Sorghum bicolor voucher NSL77217 locus pSHR0111.4... 70 7e-09
18gb|DQ430390.1| Sorghum bicolor voucher NSL77034 locus pSHR0111.4... 70 7e-09
19gb|DQ430389.1| Sorghum bicolor voucher NSL56174 locus pSHR0111.4... 70 7e-09
20gb|DQ430388.1| Sorghum bicolor voucher NSL56003 locus pSHR0111.4... 70 7e-09
21gb|DQ430387.1| Sorghum bicolor voucher NSL55243 locus pSHR0111.4... 70 7e-09
22gb|DQ430386.1| Sorghum bicolor voucher NSL51365 locus pSHR0111.4... 70 7e-09
23gb|DQ430385.1| Sorghum bicolor voucher NSL51030 locus pSHR0111.4... 70 7e-09
24gb|DQ430384.1| Sorghum bicolor voucher NSL50875 locus pSHR0111.4... 70 7e-09
25gb|DQ430383.1| Sorghum bicolor voucher BTx623 locus pSHR0111.4 g... 70 7e-09
26dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
27emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 60 6e-06
28emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 60 6e-06
29dbj|AB020961.1| Zea mays mRNA for cysteine protease component of... 58 2e-05
30gb|AY103676.1| Zea mays PCO102242 mRNA sequence 48 0.024
31gb|AF019147.1|AF019147 Zea mays cysteine proteinase Mir3 (mir3) ... 46 0.095
32gb|AC160120.2| Mus musculus BAC clone RP23-407B7 from chromosome... 46 0.095
33emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in... 42 1.5
34ref|NM_066528.2| Caenorhabditis elegans ZK370.6 (ZK370.6) mRNA, ... 42 1.5
35gb|AC111100.13| Mus musculus chromosome 3, clone RP23-179J8, com... 40 5.8
36gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosom... 40 5.8
37gb|AY371484.1| Schistosoma mansoni Smad4 (Smad4) mRNA, complete cds 40 5.8
38gb|M98552.2| Caenorhabditis elegans cosmid ZK370, complete sequence 40 5.8
39gb|AC162789.4| Mus musculus chromosome 1, clone RP24-323I23, com... 40 5.8
40emb|AJ011856.1|SCE011856 Saccharomyces cerevisiae complete mitoc... 40 5.8
41gb|AE014836.1| Plasmodium falciparum 3D7 chromosome 11 section 1... 40 5.8
42emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on ch... 40 5.8
43emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chro... 40 5.8
44emb|V00696.1|MISC16 Yeast (S. cerevisiae) mitochondrial gene for... 40 5.8
45gb|L36899.1|YSCMTCG15 Saccharomyces cerevisiae mitochondrion ori... 40 5.8
46gb|S76640.1| Saccharomyces cerevisiae bI4 RNA maturase gene, com... 40 5.8
47gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome... 40 5.8
48gb|AC154778.2| Mus musculus BAC clone RP24-459I17 from chromosom... 40 5.8
49gb|AC097454.2| Homo sapiens BAC clone RP11-2F17 from 4, complete... 40 5.8
50gb|AC116374.10| Mus musculus chromosome 1, clone RP23-294I9, com... 40 5.8
51gb|BC094153.1| Xenopus laevis cDNA clone MGC:115258 IMAGE:663983... 40 5.8
52gb|AC007556.3| Homo sapiens BAC clone RP11-18C9 from 2, complete... 40 5.8
53gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complet... 40 5.8
54emb|BX548032.5| Zebrafish DNA sequence from clone CH211-145G9 in... 40 5.8
55emb|CT030189.8| Mouse DNA sequence from clone RP24-402B23 on chr... 40 5.8
56gb|J01469.1|YSCMTCOB Yeast (S.cerevisiae) mitochondrial cob gene... 40 5.8 
>ref|XM_474131.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1377

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 353  ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttggccgcgagg 412
            ||||| |||||||||||| || |||||||||||| |||||| |||||||| |||  ||||
Sbjct: 1331 ggctttgccagggtacgcttcagagccttcactgccagtggactgtccttagccatgagg 1272

                         
Query: 413  cacgttccctgct 425
            || ||||||||||
Sbjct: 1271 caggttccctgct 1259
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>dbj|AK098910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H09, full
            insert sequence
          Length = 1753

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 353  ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttggccgcgagg 412
            ||||| |||||||||||| || |||||||||||| |||||| |||||||| |||  ||||
Sbjct: 1396 ggctttgccagggtacgcttcagagccttcactgccagtggactgtccttagccatgagg 1337

                         
Query: 413  cacgttccctgct 425
            || ||||||||||
Sbjct: 1336 caggttccctgct 1324



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/68 (83%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                        
Query: 83   agctgagttttacatatacatatgcaaaagcaaatttggtggttctgtaaacgaccgaac 142
            |||||| ||||||||||||  || || ||||||||||||  ||||||||| | || ||||
Sbjct: 1667 agctgaattttacatatac--attcagaagcaaatttggcagttctgtaaccaactgaac 1610

                    
Query: 143  ccgatttt 150
            ||| ||||
Sbjct: 1609 ccgttttt 1602
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>dbj|AK071913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M08, full
            insert sequence
          Length = 1774

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 353  ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttggccgcgagg 412
            ||||| |||||||||||| || |||||||||||| |||||| |||||||| |||  ||||
Sbjct: 1396 ggctttgccagggtacgcttcagagccttcactgccagtggactgtccttagccatgagg 1337

                         
Query: 413  cacgttccctgct 425
            || ||||||||||
Sbjct: 1336 caggttccctgct 1324
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>dbj|AK061729.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B12, full
           insert sequence
          Length = 976

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                       
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttggccgcgagg 412
           ||||| |||||||||||| || |||||||||||| |||||| |||||||| |||  ||||
Sbjct: 598 ggctttgccagggtacgcttcagagccttcactgccagtggactgtccttagccatgagg 539

                        
Query: 413 cacgttccctgct 425
           || ||||||||||
Sbjct: 538 caggttccctgct 526



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/68 (83%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                       
Query: 83  agctgagttttacatatacatatgcaaaagcaaatttggtggttctgtaaacgaccgaac 142
           |||||| ||||||||||||  || || ||||||||||||  ||||||||| | || ||||
Sbjct: 869 agctgaattttacatatac--attcagaagcaaatttggcagttctgtaaccaactgaac 812

                   
Query: 143 ccgatttt 150
           ||| ||||
Sbjct: 811 ccgttttt 804
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>dbj|D90406.1|RICOZA Oryza sativa (japonica cultivar-group) mRNA for oryzain alpha,
            complete cds
          Length = 1929

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 353  ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttggccgcgagg 412
            ||||| |||||||||||| || |||||||||||| |||||| |||||||| |||  ||||
Sbjct: 1376 ggctttgccagggtacgcttcagagccttcactgccagtggactgtccttagccatgagg 1317

                         
Query: 413  cacgttccctgct 425
            || ||||||||||
Sbjct: 1316 caggttccctgct 1304



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/68 (83%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                        
Query: 83   agctgagttttacatatacatatgcaaaagcaaatttggtggttctgtaaacgaccgaac 142
            |||||| ||||||||||||  || || ||||||||||||  ||||||||| | || ||||
Sbjct: 1647 agctgaattttacatatac--attcagaagcaaatttggcagttctgtaaccaactgaac 1590

                    
Query: 143  ccgatttt 150
            ||| ||||
Sbjct: 1589 ccgttttt 1582
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>gb|DQ430402.1| Sorghum propinquum locus pSHR0111.4 genomic sequence
          Length = 718

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 36/39 (92%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                  
Query: 83  agctgagttttacatatacatatgcaaaagcaaatttgg 121
           |||||| |||||||| || ||||||||||||||||||||
Sbjct: 561 agctgaattttacat-tatatatgcaaaagcaaatttgg 524
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>gb|DQ430401.1| Sorghum bicolor voucher PI585454 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430400.1| Sorghum bicolor voucher PI267539 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430399.1| Sorghum bicolor voucher PI267408 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430398.1| Sorghum bicolor voucher PI221607 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430397.1| Sorghum bicolor voucher PI152702 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430396.1| Sorghum bicolor voucher NSL92371 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430395.1| Sorghum bicolor voucher NSL87902b locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430394.1| Sorghum bicolor voucher NSL87902a locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430393.1| Sorghum bicolor voucher NSL87666b locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430392.1| Sorghum bicolor voucher NSL87666a locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430391.1| Sorghum bicolor voucher NSL77217 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430390.1| Sorghum bicolor voucher NSL77034 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430389.1| Sorghum bicolor voucher NSL56174 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430388.1| Sorghum bicolor voucher NSL56003 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430387.1| Sorghum bicolor voucher NSL55243 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430386.1| Sorghum bicolor voucher NSL51365 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430385.1| Sorghum bicolor voucher NSL51030 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430384.1| Sorghum bicolor voucher NSL50875 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>gb|DQ430383.1| Sorghum bicolor voucher BTx623 locus pSHR0111.4 genomic sequence
          Length = 715

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                              
Query: 353 ggcttggccagggtacgcctctgagccttcactgacagtgggctgtccttg 403
           |||||||||||||| ||| ||  ||||||||||||||||||||||||||||
Sbjct: 285 ggcttggccagggtgcgcttcgtagccttcactgacagtgggctgtccttg 235



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 atatgcaaaagcaaatttgg 121
           ||||||||||||||||||||
Sbjct: 543 atatgcaaaagcaaatttgg 524
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 353      ggcttggccagggtacgcctctgagccttcactgacagtgggctgtcctt 402
                ||||| |||||||||||| || |||||||||||| |||||| ||||||||
Sbjct: 33157603 ggctttgccagggtacgcttcagagccttcactgccagtggactgtcctt 33157652



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/68 (83%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                            
Query: 83       agctgagttttacatatacatatgcaaaagcaaatttggtggttctgtaaacgaccgaac 142
                |||||| ||||||||||||||   || ||||||||||||  ||||||||| | || ||||
Sbjct: 33157332 agctgaattttacatatacatt--cagaagcaaatttggcagttctgtaaccaactgaac 33157389

                        
Query: 143      ccgatttt 150
                ||| ||||
Sbjct: 33157390 ccgttttt 33157397
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>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 353   ggcttggccagggtacgcctctgagccttcactgacagtgggctgtcctt 402
             ||||| |||||||||||| || |||||||||||| |||||| ||||||||
Sbjct: 47996 ggctttgccagggtacgcttcagagccttcactgccagtggactgtcctt 48045



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/68 (83%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                         
Query: 83    agctgagttttacatatacatatgcaaaagcaaatttggtggttctgtaaacgaccgaac 142
             |||||| ||||||||||||||   || ||||||||||||  ||||||||| | || ||||
Sbjct: 47725 agctgaattttacatatacatt--cagaagcaaatttggcagttctgtaaccaactgaac 47782

                     
Query: 143   ccgatttt 150
             ||| ||||
Sbjct: 47783 ccgttttt 47790
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 353   ggcttggccagggtacgcctctgagccttcactgacagtgggctgtcctt 402
             ||||| |||||||||||| || |||||||||||| |||||| ||||||||
Sbjct: 40253 ggctttgccagggtacgcttcagagccttcactgccagtggactgtcctt 40302



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 57/68 (83%), Gaps = 2/68 (2%)
 Strand = Plus / Plus

                                                                         
Query: 83    agctgagttttacatatacatatgcaaaagcaaatttggtggttctgtaaacgaccgaac 142
             |||||| ||||||||||||||   || ||||||||||||  ||||||||| | || ||||
Sbjct: 39982 agctgaattttacatatacatt--cagaagcaaatttggcagttctgtaaccaactgaac 40039

                     
Query: 143   ccgatttt 150
             ||| ||||
Sbjct: 40040 ccgttttt 40047
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>dbj|AB020961.1| Zea mays mRNA for cysteine protease component of protease-inhibitor
            complex, complete cds
          Length = 1828

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 64/75 (85%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 353  ggcttggccagggtacgcctctgagccttcactga---cagtgggctgtccttggccgcg 409
            |||||||||||||| ||| ||  ||||||||||||   |||||||||||||||| ||  |
Sbjct: 1452 ggcttggccagggttcgcttcgtagccttcactgaaagcagtgggctgtccttgcccatg 1393

                           
Query: 410  aggcacgttccctgc 424
            ||||| |||||||||
Sbjct: 1392 aggcaggttccctgc 1378
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>gb|AY103676.1| Zea mays PCO102242 mRNA sequence
          Length = 1878

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 353  ggcttggccagggtacgcctctgagccttcactgacagtg 392
            |||||||||||||| ||| ||  |||||||||||||||||
Sbjct: 1491 ggcttggccagggttcgcttcgtagccttcactgacagtg 1452



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 385  tgacagtgggctgtccttggccgcgaggcacgttccctgc 424
            ||||||||||||||||||| ||  |||||| |||||||||
Sbjct: 1453 tgacagtgggctgtccttgcccatgaggcaggttccctgc 1414
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>gb|AF019147.1|AF019147 Zea mays cysteine proteinase Mir3 (mir3) mRNA, complete cds
          Length = 1830

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 354  gcttggccagggtacgcctctgagccttcactgacagtg 392
            ||||||||||||| ||| ||  |||||||||||||||||
Sbjct: 1455 gcttggccagggttcgcttcgtagccttcactgacagtg 1417
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>gb|AC160120.2| Mus musculus BAC clone RP23-407B7 from chromosome 14, complete sequence
          Length = 202981

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 140   aacccgattttaggattatgtacaggagcat 170
             |||||||||||||||||| | ||||||||||
Sbjct: 65968 aacccgattttaggattaggaacaggagcat 65998
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>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21,
              complete sequence
          Length = 129478

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 90     ttttacatatacatatgcaaaagca 114
              |||||||| ||||||||||||||||
Sbjct: 119390 ttttacatttacatatgcaaaagca 119414
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>ref|NM_066528.2| Caenorhabditis elegans ZK370.6 (ZK370.6) mRNA, complete cds
          Length = 998

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 caattgcaatgccagaaaaag 344
           |||||||||||||||||||||
Sbjct: 994 caattgcaatgccagaaaaag 974
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>gb|AC111100.13| Mus musculus chromosome 3, clone RP23-179J8, complete sequence
          Length = 216852

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     cataataacaatggcagctc 65
              ||||||||||||||||||||
Sbjct: 120204 cataataacaatggcagctc 120185
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>gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosome 8, complete sequence
          Length = 235813

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 165    gagcatctattataaagaagatac 188
              ||||||||||||||||| ||||||
Sbjct: 211168 gagcatctattataaaggagatac 211191
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>gb|AY371484.1| Schistosoma mansoni Smad4 (Smad4) mRNA, complete cds
          Length = 3146

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 154  attatgtacaggagcatctattat 177
            |||| |||||||||||||||||||
Sbjct: 1972 attaggtacaggagcatctattat 1995
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>gb|M98552.2| Caenorhabditis elegans cosmid ZK370, complete sequence
          Length = 38725

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   aattgcaatgccagaaaaag 344
             ||||||||||||||||||||
Sbjct: 23645 aattgcaatgccagaaaaag 23664
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>gb|AC162789.4| Mus musculus chromosome 1, clone RP24-323I23, complete sequence
          Length = 170236

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    acatatacatatgcaaaagcaaat 117
             ||||||||||||||||||| ||||
Sbjct: 96777 acatatacatatgcaaaagtaaat 96754
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>emb|AJ011856.1|SCE011856 Saccharomyces cerevisiae complete mitochondrial genome
          Length = 85779

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   aaatttggtggttctgtaaa 133
             ||||||||||||||||||||
Sbjct: 41670 aaatttggtggttctgtaaa 41689
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>gb|AE014836.1| Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete
              sequence
          Length = 250743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     atacatatgcaaaagcaaat 117
              ||||||||||||||||||||
Sbjct: 171275 atacatatgcaaaagcaaat 171294
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>emb|AL355674.10| Human DNA sequence from clone RP11-171A24 on chromosome 9 Contains the
             5' end of the RORB gene for RAR-related orphan receptor B
             protein (RZRB, ROR-BETA), two novel genes and two CpG
             islands, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 238   gtgatcatttgcagaagttaatca 261
             |||||||||| |||||||||||||
Sbjct: 81873 gtgatcattttcagaagttaatca 81896
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>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains
             pseudogene similar to part of a novel gene (KIAA1688), a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 6 (SLC25A6) (ANT3)
             pseudogene and a CpG island, complete sequence
          Length = 169550

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    ttttacatatacatatgcaa 109
             ||||||||||||||||||||
Sbjct: 22532 ttttacatatacatatgcaa 22513
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>emb|V00696.1|MISC16 Yeast (S. cerevisiae) mitochondrial gene for cytochrome B extending
            from map position 71.3 to 80.2. (Strain D273-10B.)
          Length = 6264

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  aaatttggtggttctgtaaa 133
            ||||||||||||||||||||
Sbjct: 1475 aaatttggtggttctgtaaa 1494
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>gb|L36899.1|YSCMTCG15 Saccharomyces cerevisiae mitochondrion origin of replication (ori6)
            and oli1 gene, complete cds
          Length = 8316

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  aaatttggtggttctgtaaa 133
            ||||||||||||||||||||
Sbjct: 2631 aaatttggtggttctgtaaa 2650
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>gb|S76640.1| Saccharomyces cerevisiae bI4 RNA maturase gene, complete cds
          Length = 765

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 aaatttggtggttctgtaaa 133
           ||||||||||||||||||||
Sbjct: 184 aaatttggtggttctgtaaa 203
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>gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome 8, complete sequence
          Length = 220673

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   gagcatctattataaagaagatac 188
             ||||||||||||||||| ||||||
Sbjct: 75779 gagcatctattataaaggagatac 75802
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>gb|AC154778.2| Mus musculus BAC clone RP24-459I17 from chromosome 12, complete
            sequence
          Length = 155367

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   cttgatgaattccataataa 53
            ||||||||||||||||||||
Sbjct: 8995 cttgatgaattccataataa 8976
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>gb|AC097454.2| Homo sapiens BAC clone RP11-2F17 from 4, complete sequence
          Length = 163486

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    tcatgtttcttgatgaattc 45
             ||||||||||||||||||||
Sbjct: 44937 tcatgtttcttgatgaattc 44918
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>gb|AC116374.10| Mus musculus chromosome 1, clone RP23-294I9, complete sequence
          Length = 179835

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     acatatacatatgcaaaagcaaat 117
              ||||||||||||||||||| ||||
Sbjct: 171309 acatatacatatgcaaaagtaaat 171286
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>gb|BC094153.1| Xenopus laevis cDNA clone MGC:115258 IMAGE:6639837, complete cds
          Length = 5263

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   tttacatatacatatgcaaa 110
            ||||||||||||||||||||
Sbjct: 3028 tttacatatacatatgcaaa 3009
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>gb|AC007556.3| Homo sapiens BAC clone RP11-18C9 from 2, complete sequence
          Length = 167358

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ttacatatacatatgcaaaa 111
             ||||||||||||||||||||
Sbjct: 66744 ttacatatacatatgcaaaa 66763
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>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence
          Length = 203428

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 94     acatatacatatgcaaaagcaaat 117
              |||||||||||| |||||||||||
Sbjct: 152020 acatatacatattcaaaagcaaat 151997
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>emb|BX548032.5| Zebrafish DNA sequence from clone CH211-145G9 in linkage group 17,
             complete sequence
          Length = 161483

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   agaaaaagcacctataggct 356
             ||||||||||||||||||||
Sbjct: 52472 agaaaaagcacctataggct 52491
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>emb|CT030189.8| Mouse DNA sequence from clone RP24-402B23 on chromosome 12, complete
             sequence
          Length = 223910

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    cttgatgaattccataataa 53
             ||||||||||||||||||||
Sbjct: 60956 cttgatgaattccataataa 60975
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>gb|J01469.1|YSCMTCOB Yeast (S.cerevisiae) mitochondrial cob gene, intron 4
          Length = 1453

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 aaatttggtggttctgtaaa 133
           ||||||||||||||||||||
Sbjct: 598 aaatttggtggttctgtaaa 617


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,154,289
Number of Sequences: 3902068
Number of extensions: 4154289
Number of successful extensions: 79749
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79579
Number of HSP's gapped (non-prelim): 163
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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